MELO3C023144 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023144
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDTW domain-containing 2
Locationchr8 : 15495723 .. 15496151 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTACCCTAAAACGAAAGTCGAGGAAGCAACACATCAAAACGGTATCGTTTTCTCCAGAGGCATGGAGTCAACAAACAACCACAACTTCGCCGCCGGATATTCCTCGTCGTCCCCGCCACCTCGGCGGCCAATTTGCCCTAATTGCAACCGTCCCCAACCAGTCTGCCTCTGCAAATTCCTTCCATCTTCACCAATCGCAACAAAATTCTTAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACGAAATGCCTCCTCAACGCAACAACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCCCGCAGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCGATCAACATCTCGGATCTCAACATAA

mRNA sequence

ATGCCTTACCCTAAAACGAAAGTCGAGGAAGCAACACATCAAAACGGTATCGTTTTCTCCAGAGGCATGGAGTCAACAAACAACCACAACTTCGCCGCCGGATATTCCTCGTCGTCCCCGCCACCTCGGCGGCCAATTTGCCCTAATTGCAACCGTCCCCAACCAGTCTGCCTCTGCAAATTCCTTCCATCTTCACCAATCGCAACAAAATTCTTAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACGAAATGCCTCCTCAACGCAACAACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCCCGCAGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCGATCAACATCTCGGATCTCAACATAA

Coding sequence (CDS)

ATGCCTTACCCTAAAACGAAAGTCGAGGAAGCAACACATCAAAACGGTATCGTTTTCTCCAGAGGCATGGAGTCAACAAACAACCACAACTTCGCCGCCGGATATTCCTCGTCGTCCCCGCCACCTCGGCGGCCAATTTGCCCTAATTGCAACCGTCCCCAACCAGTCTGCCTCTGCAAATTCCTTCCATCTTCACCAATCGCAACAAAATTCTTAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACGAAATGCCTCCTCAACGCAACAACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCCCGCAGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCGATCAACATCTCGGATCTCAACATAA

Protein sequence

MPYPKTKVEEATHQNGIVFSRGMESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATKFLKSSYYNILTNHNTSSPLHQSSRNASSTQQPSSIAASSPVSPNSSTNPLPQSSFSRLHLTPRRRSTSRIST*
Homology
[Close]
BLAST of MELO3C023144 vs. TrEMBL
Match: A0A0A0KW36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165850 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 23 MESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          MES NNH+ AAGYSSSS PPRR IC NCNRPQPVCLCKFLPS PIATK
Sbjct: 1  MESRNNHDLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATK 48

[Close]
BLAST of MELO3C023144 vs. NCBI nr
Match: gi|659121687|ref|XP_008460775.1| (PREDICTED: LOW QUALITY PROTEIN: DTW domain-containing protein 2 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MPYPKTKVEEATHQNGIVFSRGMESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCK 60
          MPYPKTKVEEATHQNGIVFSRGMESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCK
Sbjct: 1  MPYPKTKVEEATHQNGIVFSRGMESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCK 60

Query: 61 FLPSSPIATK 71
          FLPSSPIATK
Sbjct: 61 FLPSSPIATK 70

[Close]
BLAST of MELO3C023144 vs. NCBI nr
Match: gi|449463356|ref|XP_004149400.1| (PREDICTED: DTW domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 23 MESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          MES NNH+ AAGYSSSS PPRR IC NCNRPQPVCLCKFLPS PIATK
Sbjct: 1  MESRNNHDLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATK 48

[Close]
BLAST of MELO3C023144 vs. NCBI nr
Match: gi|1009160068|ref|XP_015898156.1| (PREDICTED: DTW domain-containing protein 2 [Ziziphus jujuba])

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 1 

Query: 28  NHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATKFLKSSYYNILTNHNTSS 87
           +H   +G SSSSPPPRR IC NC+RP PVCLC+ LP+ PI TK       +++  H+   
Sbjct: 7   DHLDVSGTSSSSPPPRRTICGNCSRPSPVCLCESLPAQPIPTK------THVVILHHPHE 66

Query: 88  PLHQSSRNASSTQ--QPSSIAASSPVSPNSSTNPLPQSSFSRLHLTPRRRSTSRIS 142
             H+ S     T+    S+   S  + P  S  PL   S   ++L P   S+  ++
Sbjct: 67  AQHKLSTTPVLTKCLLNSTTIVSRRLRPGLS--PLLDQSPPAIYLFPPTHSSPAVN 114

The following BLAST results are available for this feature:
BLAST of MELO3C023144 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW36_CUCSA8.0e-1685.42Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165850 PE=4 SV=1[more]
BLAST of MELO3C023144 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121687|ref|XP_008460775.1|1.1e-34100.00PREDICTED: LOW QUALITY PROTEIN: DTW domain-containing protein 2 [Cucumis melo][more]
gi|449463356|ref|XP_004149400.1|1.1e-1585.42PREDICTED: DTW domain-containing protein 2 [Cucumis sativus][more]
gi|1009160068|ref|XP_015898156.1|5.2e-0836.21PREDICTED: DTW domain-containing protein 2 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46734melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023144T1MELO3C023144T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46734MU46734transcribed_cluster