MELO3C023142 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023142
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr8 : 15455580 .. 15455950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGATGAGACTGTTGCGGAATATGGGAAGAAGTTTATGGAGTTAGCAAGGTATGTGATAACCTTCATAATGAATGAAGAGGATAAGTGTACGCATTTTGAAGAGGGCCTAAGAACATCAATTCGAGCTCTAGTGACGGCATGTGTAGGCTCGTTAGATTTTTCTAAGTTGGTTGAAGCAGCCATACGCATTGAGAAATGTTTGGTTGAGGAAGATGAAGAGAAAATGGTGGAAGGAGAAGAGTCAAGTCCATTGCTGGATAGAGGACAAGAAAAGGAAGACAACAAAGAAGCAGAGAAGTGGACTATGTTTTACTTTAGGCAAGGATCGCATTGGTTTAGCGATAAGAGGCCAAGGTTTTTGGAATGTTGA

mRNA sequence

GCGATGAGACTGTTGCGGAATATGGGAAGAAGTTTATGGAGTTAGCAAGGTATGTGATAACCTTCATAATGAATGAAGAGGATAAGTGTACGCATTTTGAAGAGGGCCTAAGAACATCAATTCGAGCTCTAGTGACGGCATGTGTAGGCTCGTTAGATTTTTCTAAGTTGGTTGAAGCAGCCATACGCATTGAGAAATGTTTGGTTGAGGAAGATGAAGAGAAAATGGTGGAAGGAGAAGAGTCAAGTCCATTGCTGGATAGAGGACAAGAAAAGGAAGACAACAAAGAAGCAGAGAAGTGGACTATGTTTTACTTTAGGCAAGGATCGCATTGGTTTAGCGATAAGAGGCCAAGGTTTTTGGAATGTTGA

Coding sequence (CDS)

GCGATGAGACTGTTGCGGAATATGGGAAGAAGTTTATGGAGTTAGCAAGGTATGTGATAACCTTCATAATGAATGAAGAGGATAAGTGTACGCATTTTGAAGAGGGCCTAAGAACATCAATTCGAGCTCTAGTGACGGCATGTGTAGGCTCGTTAGATTTTTCTAAGTTGGTTGAAGCAGCCATACGCATTGAGAAATGTTTGGTTGAGGAAGATGAAGAGAAAATGGTGGAAGGAGAAGAGTCAAGTCCATTGCTGGATAGAGGACAAGAAAAGGAAGACAACAAAGAAGCAGAGAAGTGGACTATGTTTTACTTTAGGCAAGGATCGCATTGGTTTAGCGATAAGAGGCCAAGGTTTTTGGAATGTTGA

Protein sequence

DETVAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIRIEKCLVEEDEEKMVEGEESSPLLDRGQEKEDNKEAEKWTMFYFRQGSHWFSDKRPRFLEC*
Homology
[Close]
BLAST of MELO3C023142 vs. TrEMBL
Match: A0A0A0KPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3  TVAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIR 62
          T+AEY KK+ +L  +  + I +E   C   EEGLR  IR  VT C   +DFSKLVEAAIR
Sbjct: 2  TIAEYEKKYKKLYEHATSVIEDEAKDCKRVEEGLREEIRTSVTPCAKWIDFSKLVEAAIR 61

Query: 63 IE 65
          ++
Sbjct: 62 VQ 63

[Close]
BLAST of MELO3C023142 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-58
Identity = 112/122 (91.80%), Postives = 115/122 (94.26%), Query Frame = 1 

Query: 1   DETVAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAA 60
           DETVA+YGKKFMELARY ITFIMNEEDKC HFE+GLRTSIRALVT C GSLDFSKLVEAA
Sbjct: 89  DETVAQYGKKFMELARYAITFIMNEEDKCMHFEDGLRTSIRALVTTCAGSLDFSKLVEAA 148

Query: 61  IRIEKCLVEEDEEKMVEGEESSPLLDRGQEKEDNKEAEKWTMFYFRQGSHWFSDKRPRFL 120
           IRIEKCLVEEDEEKMVEGEESSPLLDR QEKEDNKEAEKWTMF+FRQGSHWF DKRPRF 
Sbjct: 149 IRIEKCLVEEDEEKMVEGEESSPLLDRRQEKEDNKEAEKWTMFFFRQGSHWFGDKRPRFP 208

Query: 121 EC 123
           EC
Sbjct: 209 EC 210

[Close]
BLAST of MELO3C023142 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 1 

Query: 3   TVAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIR 62
           T+AEY KK+++L++Y  + I +E D+C  FE+GLR  IR  VTA     +FSKLVE A+R
Sbjct: 176 TIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVETAVR 235

Query: 63  IEKCLVEEDEEKMVEGEESSPLLDRGQEKEDNKEAEK 100
           +EK L E   EK V    S+ +       + N++  +
Sbjct: 236 VEKSLAERKNEKEVSRNVSTAITQGVSRDKSNRQGNR 272

[Close]
BLAST of MELO3C023142 vs. NCBI nr
Match: gi|778697787|ref|XP_011654404.1| (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 4  VAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIRI 63
          VAEY KK+ +L++Y  + I +E ++C  FEEGLR  IR LVTAC   +DFSK +EAA+R+
Sbjct: 3  VAEYEKKYTKLSKYATSVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAALRV 62

Query: 64 EKCLVEEDEEK 75
          EK + E   E+
Sbjct: 63 EKSVYERKRER 73

[Close]
BLAST of MELO3C023142 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 

Query: 3   TVAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIR 62
           +VAEY +K+ EL+RY    + +E D C  FE GLR  IR LVTA     +FS+LVE A+R
Sbjct: 97  SVAEYERKYTELSRYAEMIVASESDMCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALR 156

Query: 63  IEKCLVEEDEEKMVEGEESSPLLDRGQEK 92
           +E+ +VEE     +    S+    RG+E+
Sbjct: 157 VEQSIVEEKSAMELSRGVSTTSGIRGREQ 185

[Close]
BLAST of MELO3C023142 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 

Query: 1   DETVAEYGKKFMELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAA 60
           D TV EY K F ELA+Y + F+++E DKC  F EGLR  IRA +TA +   DFSKLV+ A
Sbjct: 95  DMTVIEYEKIFTELAKYTLDFVIDEVDKCKQFGEGLRIEIRAPITASINWSDFSKLVDVA 154

Query: 61  I 62
           +
Sbjct: 155 M 155

The following BLAST results are available for this feature:
BLAST of MELO3C023142 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI9_CUCSA3.4e-0750.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1[more]
BLAST of MELO3C023142 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131051|ref|XP_008465483.1|1.6e-5891.80PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|1.5e-1140.21PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|778697787|ref|XP_011654404.1|4.3e-1150.70PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
gi|659112465|ref|XP_008456237.1|1.4e-0942.70PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo][more]
gi|659111571|ref|XP_008455797.1|2.0e-0854.10PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023142T1MELO3C023142T1mRNA