MELO3C023141 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023141
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosomal protein S12 methylthiotransferase RimO
Locationchr8 : 15364922 .. 15365353 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTGACAATGTGAAGGTATCAGTGGACATGGTTGCCATTATTAATTTCTTCTTCCCTATTCCAACAAGGGAAGGTATGACTAAGCTTTCCCAAGAAGTCGGTTCACAGTTGTTATGGCCTCGTCATTTGGTCATTCCTCTAGACGAGAAGGTAATGTGTTTTTAACAGATGGATTTGATTTAAATATATTTCATATGGATGACATTTTTATGTTTGTGGCAGATGAAAAGCATGTACCAAGCTGATCCGCGATTACCGTCGTTGACACTGAATATAAAGAGAGCACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCGAAGATTCAAATTCACATACCTGCTAAAGTTGTTGGGTATCAACGAAAATGTTGCATATTCCTCAAGGCACTCCAAGAATTTTGTCAAATGTAG

mRNA sequence

ATGGACGGTGACAATGTGAAGGTATCAGTGGACATGGTTGCCATTATTAATTTCTTCTTCCCTATTCCAACAAGGGAAGGTATGACTAAGCTTTCCCAAGAAGTCGGTTCACAGTTGTTATGGCCTCGTCATTTGGTCATTCCTCTAGACGAGAAGATGAAAAGCATGTACCAAGCTGATCCGCGATTACCGTCGTTGACACTGAATATAAAGAGAGCACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCGAAGATTCAAATTCACATACCTGCTAAAGTTGTTGGGTATCAACGAAAATGTTGCATATTCCTCAAGGCACTCCAAGAATTTTGTCAAATGTAG

Coding sequence (CDS)

ATGGACGGTGACAATGTGAAGGTATCAGTGGACATGGTTGCCATTATTAATTTCTTCTTCCCTATTCCAACAAGGGAAGGTATGACTAAGCTTTCCCAAGAAGTCGGTTCACAGTTGTTATGGCCTCGTCATTTGGTCATTCCTCTAGACGAGAAGATGAAAAGCATGTACCAAGCTGATCCGCGATTACCGTCGTTGACACTGAATATAAAGAGAGCACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCGAAGATTCAAATTCACATACCTGCTAAAGTTGTTGGGTATCAACGAAAATGTTGCATATTCCTCAAGGCACTCCAAGAATTTTGTCAAATGTAG

Protein sequence

MDGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMKSMYQADPRLPSLTLNIKRAPVTLRLLLWELDYIGSKIQIHIPAKVVGYQRKCCIFLKALQEFCQM*
Homology
[Close]
BLAST of MELO3C023141 vs. TrEMBL
Match: A0A0A0KMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 1  MDGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMK---SMY 60
          MDGDNV + VD+V   +   PIPTR+G+T L QE+ SQLLWPRHLVIP DEK +      
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADPRLPS 66
          QAD R PS
Sbjct: 61 QADERAPS 68

[Close]
BLAST of MELO3C023141 vs. TrEMBL
Match: A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-08
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 2   DGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMKSM 57
           DG+N+KVSVD+V       P PT+EG+TKL+ E+GS L+WPRHLV+  ++K  S+
Sbjct: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKSYSV 183

[Close]
BLAST of MELO3C023141 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.2e-51
Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 1 

Query: 1   MDGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMKSMYQAD 60
           MDGDNVKVSVDMV   N F P+PTREG T LS+EVGSQLLWPRHLVIPLDEKMKS+YQAD
Sbjct: 177 MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSEEVGSQLLWPRHLVIPLDEKMKSVYQAD 236

Query: 61  PRLPSLTLNIKRAPVTLRLLLWELDYIGSKIQIHIPAKVVGYQRKCCIFLKALQEFCQM 120
            RLPSLTLN KRAPVTLRLLLWEL+YIGSKI+IH+PAKV GY+RKCCIFL+ALQEFCQM
Sbjct: 237 SRLPSLTLNTKRAPVTLRLLLWELNYIGSKIRIHVPAKVFGYERKCCIFLEALQEFCQM 295

[Close]
BLAST of MELO3C023141 vs. NCBI nr
Match: gi|659105267|ref|XP_008453054.1| (PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 7.1e-27
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1 

Query: 52  KMKSMYQADPRLPSLTLNIKRAPVTLRLLLWELDYIGSKIQIHIPAKVVGYQRKCCIFLK 111
           +MKS+YQADPRLPSLTLN KRAPVTLRLLLWELDYIGSKIQIH+PAKV  Y+RKCCIFL+
Sbjct: 9   QMKSVYQADPRLPSLTLNTKRAPVTLRLLLWELDYIGSKIQIHVPAKVFRYERKCCIFLE 68

Query: 112 ALQEFCQM 120
           ALQEFCQM
Sbjct: 69  ALQEFCQM 76

[Close]
BLAST of MELO3C023141 vs. NCBI nr
Match: gi|659072230|ref|XP_008464173.1| (PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MDGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMKSMYQAD 60
           MDGDNVKVSVDMV   N F P+PTRE  T LSQEVGSQLLWPRHLVIPLD+KMKS+YQAD
Sbjct: 910 MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 969

Query: 61  PRLPSLTLNIKRAPVTL 78
           P+L SLTLN KRAPVTL
Sbjct: 970 PQLSSLTLNTKRAPVTL 986

[Close]
BLAST of MELO3C023141 vs. NCBI nr
Match: gi|778714056|ref|XP_011657179.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 1 

Query: 2   DGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMKSMYQADP 61
           DG+N+KVSVD+V       P PT+EG+TKL+ E+GS L+WPRHLV+  ++K    +  DP
Sbjct: 22  DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKETVGFNTDP 81

Query: 62  RLPSLTLNIKRAPVTLRLLLWELDYIGSKIQIHIPAKVVGYQRKCCIFLKALQEFCQM 120
              S+   + RA V LR L+  ++++GS IQ++ P ++ G +RKCCI +++L++F  M
Sbjct: 82  STFSMAAYL-RALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFSSM 138

[Close]
BLAST of MELO3C023141 vs. NCBI nr
Match: gi|778714054|ref|XP_011657178.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-19
Identity = 51/119 (42.86%), Postives = 83/119 (69.75%), Query Frame = 1 

Query: 2   DGDNVKVSVDMVAIINFFFPIPTREGMTKLSQEVGSQLLWPRHLVIPLDEKMKSM-YQAD 61
           DG+N+KVSVD+V       P PT+EG+TKL+ E+GS L+WPRHLV+  ++K +++ +  D
Sbjct: 22  DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKKETVGFNTD 81

Query: 62  PRLPSLTLNIKRAPVTLRLLLWELDYIGSKIQIHIPAKVVGYQRKCCIFLKALQEFCQM 120
           P   S+   + RA V LR L+  ++++GS IQ++ P ++ G +RKCCI +++L++F  M
Sbjct: 82  PSTFSMAAYL-RALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFSSM 139

The following BLAST results are available for this feature:
BLAST of MELO3C023141 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMP7_CUCSA1.7e-1158.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1[more]
A0A0A0KCE4_CUCSA8.8e-0852.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1[more]
BLAST of MELO3C023141 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659134106|ref|XP_008467031.1|3.2e-5184.87PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo][more]
gi|659105267|ref|XP_008453054.1|7.1e-2788.24PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo][more]
gi|659072230|ref|XP_008464173.1|6.0e-2681.82PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo][more]
gi|778714056|ref|XP_011657179.1|1.9e-1943.22PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus][more]
gi|778714054|ref|XP_011657178.1|3.2e-1942.86PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023141T1MELO3C023141T1mRNA