MELO3C023140 (gene) Melon (DHL92) v3.5.1

NameMELO3C023140
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Locationchr8 : 15350370 .. 15351099 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCTATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGTTAGTTCAGGTTTTGATTTTCAATGATTTGTCATTTCTTACTATTTCCTGCTTTTGTTTATCATTTCGAGTTTGCTTCATTGATTTTGACACTCTAAACTGAATTCGGATATCGACTATTCATTTAGGACCAGTATCTTCTGCAAACGGGTCAGCCCTTGCTAAGATTGGTTCGACGGTGAGTACCTCCACACTTAACCTTATCATATGTGCTAGGGTTTTGTGACGGTTTGTTCTTAATTTGATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACACCTTCTGTAGAGTCACCGGATGAGGGTTGCATAGGTTGGCCTTCGTCAATTACTAAAGATTTTTGGTCATTGTTCATCATAATCTTTACGATAACATCCTATACATCTTGGTGATTTGGAGTCTTATCTTTTCCAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATCGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACATATTGCAACTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAG

mRNA sequence

ATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCTATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGACCAGTATCTTCTGCAAACGGGTCAGCCCTTGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACACCTTCTGTAGAGTCACCGGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATCGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACATATTGCAACTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAG

Coding sequence (CDS)

ATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCTATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGACCAGTATCTTCTGCAAACGGGTCAGCCCTTGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACACCTTCTGTAGAGTCACCGGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATCGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACATATTGCAACTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAG

Protein sequence

MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTFFCNFALTYCNLQLIFFEQMWMPIKR*
BLAST of MELO3C023140 vs. NCBI nr
Match: gi|659113968|ref|XP_008456845.1| (PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 3.2e-57
Identity = 119/142 (83.80%), Postives = 127/142 (89.44%), Query Frame = 1

Query: 79  VMKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEEQTKKIGIEEDISDRNKF 138
           +MKSIVEGGSTPM+RIE          +EQRKEI+TEEKV EEQTKKIGIEEDISDR+KF
Sbjct: 1   MMKSIVEGGSTPMERIET---------KEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKF 60

Query: 139 KKVELPRFSGKKFDSFIFWTERNFQKYKPIDSERVIVAVIRFDGTTLDWSRSKDEHDAFK 198
           KKVEL RFSGKKFDSFIF  +RNFQKY+PIDSERV VAVIRFDGTTLDWSRSKDEH+AFK
Sbjct: 61  KKVELQRFSGKKFDSFIFRIKRNFQKYEPIDSERVNVAVIRFDGTTLDWSRSKDEHNAFK 120

Query: 199 DWLRLKQRLLLPFQSVREELSR 221
           DWLRLKQRLLLPFQSVREELSR
Sbjct: 121 DWLRLKQRLLLPFQSVREELSR 133

BLAST of MELO3C023140 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 86/224 (38.39%), Postives = 135/224 (60.27%), Query Frame = 1

Query: 1   MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENMGSLTKSLQRLRIQIEENQQLFLQYVE 60
           M Q +IEE+LE  +QE+ GMKKELSK+PAIE ++  + KSL+ +R+Q E+ QQL    +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  TMVKEKSTVSERIAMNLPVMKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKV-- 120
           T  KE+ST+S                      R+E E   KE +  + +++  +  K   
Sbjct: 61  TNSKERSTMS----------------------RLETESPAKEFEKMKGKEDDASSSKAID 120

Query: 121 ------SEEQTKKIGIEEDISDRNKFKKVELPRFSGKKFDSFIFWTERNFQKYKPIDSER 180
                 ++   ++I  ++ +SDRNKFKK+E+P F+G+  DS++F  ER FQ +K  DSE+
Sbjct: 121 SGRNFGADRNDRRIDGDDGVSDRNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEK 180

Query: 181 VIVAVIRFDGTTLDWSRSKDEHDAFKDWLRLKQRLLLPFQSVRE 217
           ++V+ I FDG  L+W RS++E D F  W  +K+RLL+ F+S ++
Sbjct: 181 MLVSTISFDGPALNWFRSQEERDKFTSWSNMKERLLIRFRSNKD 202

BLAST of MELO3C023140 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 88/220 (40.00%), Postives = 134/220 (60.91%), Query Frame = 1

Query: 1   MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENMGSLTKSLQRLRIQIEENQQLFLQYVE 60
           M Q +IEE++E+FEQEV G+KKEL+K+P IE  +  LT++++ +R+Q E+ QQ  L Y+E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  TMVKEKSTVSERI----AMNLPVMKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEE 120
              KE+S   ER+      N P +KS            +N++     D+EE         
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKS------------KNDKASSSRDVEEIN------- 120

Query: 121 KVSEEQTKKIGIEEDISDRNKFKKVELPRFSGKKFDSFIFWTERNFQKYKPIDSERVIVA 180
                 TKK   +E+ +DR+KFKKVE+P F+G+  +S++F  ER FQ +K  +SE+++V+
Sbjct: 121 ------TKKNEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVS 180

Query: 181 VIRFDGTTLDWSRSKDEHDAFKDWLRLKQRLLLPFQSVRE 217
            I FDG  L+W R+++E + F  W  LK+RLL+ FQS RE
Sbjct: 181 TICFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTRE 195

BLAST of MELO3C023140 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 80/217 (36.87%), Postives = 130/217 (59.91%), Query Frame = 1

Query: 1   MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENMGSLTKSLQRLRIQIEENQQLFLQYVE 60
           M Q +IEE+LE  +QE+ GMKKELSK+P IE ++  + KS+  +R+Q E+ QQL    +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61  TMVKEKSTVSERIAMNLPVMKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSE 120
           T  KE+S +S +               + P  +   + + KE D    R  IE++     
Sbjct: 61  TSSKERSMMSGQ--------------ATEPTVKEFEKAKGKESDASSSRM-IESDRNFRA 120

Query: 121 EQTKKIGIEED-ISDRNKFKKVELPRFSGKKFDSFIFWTERNFQKYKPIDSERVIVAVIR 180
           + +++    +D   DRNKFKK+E+P F+G+  DS++F  ER FQ ++  +SE+++V+ + 
Sbjct: 121 DGSERRNDSDDSFPDRNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEKLLVSTVS 180

Query: 181 FDGTTLDWSRSKDEHDAFKDWLRLKQRLLLPFQSVRE 217
           FDG  L+W RS++E D F  W  +K+RLL+ F+S ++
Sbjct: 181 FDGPALNWYRSQEERDKFTSWSNMKERLLVRFRSNKD 202

BLAST of MELO3C023140 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 1

Query: 5   QIEEKLEAFEQEVIGMKKELSKIPAIEENMGSLTKSLQRLRIQIEENQQLFLQYVETMVK 64
           +IEE++E F+ E+ G+KKELSK+  I  ++  + K+L+ +R Q E+ QQ+ L ++E+  K
Sbjct: 5   RIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFMESNAK 64

Query: 65  EKSTVSERIAMNLPVMKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEEQTK 124
           E+S +SER+  +    KS  +G        +  E     D+   R   E   +      +
Sbjct: 65  ERSMMSERLTESAVRDKSTTKG--------KKNEATSSCDIGADRNIGEGRNE------R 124

Query: 125 KIGIEEDISDRNKFKKVELPRFSGKKFDSFIFWTE 160
           K   +E+  DRNKFKKV++P F+G+  DS++F  E
Sbjct: 125 KSDNDENAGDRNKFKKVKMPIFNGEDLDSWLFRVE 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659113968|ref|XP_008456845.1|3.2e-5783.80PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo][more]
gi|659109397|ref|XP_008454696.1|1.8e-3638.39PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659134102|ref|XP_008467029.1|3.5e-3540.00PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|2.1e-3236.87PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659131700|ref|XP_008465811.1|6.1e-1634.19PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006401RNA catabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006401 RNA catabolic process
biological_process GO:0006396 RNA processing
cellular_component GO:0005829 cytosol
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0004527 exonuclease activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53572melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023140T2MELO3C023140T2mRNA
MELO3C023140T1MELO3C023140T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53572MU53572transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 48..130
score: 1.8
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 13..132
score: 2.53
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 9..130
score: 1.3