MELO3C023137 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023137
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr8 : 15336883 .. 15337794 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTAGCGAAAAATATTGAAATTAGTTTTGATGGAGCGGCATTAGACTGGTATCGATCGCACGAAGAACGCGATCCATTCAAAGATTGGGTGGAATTGAAGCAAAGACTACTGGTCCATTTCCGATTAGTAAGGGAAGGCCCCATTTGTGGACAATTCTTAGCGATCAAACAAGAGACGACGGTAGAGGAGTATTGCAACCTCTTCGATAAGTTAGTAGCACTGTTGCCTCATCTACTGAAGGAAGTATTAGAGGAAACCTTCATGAATGGGCTGACTCCATGGATCAAGGCTGAAGTTGAGTTCTGGGAGCCAGTTGGGCTGCCGCAAATGATAAAATTGACCCAACGAGTGGAGAATTGTGAAATTACACAAAGAGAAGCAAATCTAAAGAACATCGAAGGTAAGACCCAAACTAATTTTTCCATTCGTAGAGCTGTTAACCCATTAAGTATGAATGATAGTAAACCTGGAAACAACTTCCCTATGAGAACGATAACTTTGAGAGGGGTGACGGCTGGAGATAACCGGCGAAAAGGACCGGCGAAAAAGCTTTCTGATGTTGAATTTCAGGCACATAGGGACAAGGGGCTTTGTTTTCGATGTAAAGTTAAAGAACAGAGAGATTTAAGGATGTTTGTGGTTCGGGAGAATGATGAGGAAGTAGAAATTATTGAAGACGAAGATTATGAGAGGAATAAGGAGATGAAATTGTTGGAAGCAAAGGAAGAAACAAGGTCAGTTGTAGAGTTATCAGTAAACTCATTAGTTGGCCTGTCTAATCTTGGAACTATGAAGGTGGAAGGGAAAATTAAGGTAGAAGAAGTAATAGTATTGACCAATTGTTGTGCCACTCACGATTTCATATCTGAAAAATTAGTGTCATTCTTGCAAGAAGTAAACCTCTAA

mRNA sequence

ATGTTGTTAGCGAAAAATATTGAAATTAGTTTTGATGGAGCGGCATTAGACTGGTATCGATCGCACGAAGAACGCGATCCATTCAAAGATTGGGTGGAATTGAAGCAAAGACTACTGGTCCATTTCCGATTAGTAAGGGAAGGCCCCATTTGTGGACAATTCTTAGCGATCAAACAAGAGACGACGGTAGAGGAGTATTGCAACCTCTTCGATAAGTTAGTAGCACTGTTGCCTCATCTACTGAAGGAAGTATTAGAGGAAACCTTCATGAATGGGCTGACTCCATGGATCAAGGCTGAAGTTGAGTTCTGGGAGCCAGTTGGGCTGCCGCAAATGATAAAATTGACCCAACGAGTGGAGAATTGTGAAATTACACAAAGAGAAGCAAATCTAAAGAACATCGAAGGTAAGACCCAAACTAATTTTTCCATTCGTAGAGCTGTTAACCCATTAAGTATGAATGATAGTAAACCTGGAAACAACTTCCCTATGAGAACGATAACTTTGAGAGGGGTGACGGCTGGAGATAACCGGCGAAAAGGACCGGCGAAAAAGCTTTCTGATGTTGAATTTCAGGCACATAGGGACAAGGGGCTTTGTTTTCGATGTAAAGTTAAAGAACAGAGAGATTTAAGGATGTTTGTGGTTCGGGAGAATGATGAGGAAGTAGAAATTATTGAAGACGAAGATTATGAGAGGAATAAGGAGATGAAATTGTTGGAAGCAAAGGAAGAAACAAGGTCAGTTGTAGAGTTATCAGTAAACTCATTAGTTGGCCTGTCTAATCTTGGAACTATGAAGGTGGAAGGGAAAATTAAGGTAGAAGAAGTAATAGTATTGACCAATTGTTGTGCCACTCACGATTTCATATCTGAAAAATTAGTGTCATTCTTGCAAGAAGTAAACCTCTAA

Coding sequence (CDS)

ATGTTGTTAGCGAAAAATATTGAAATTAGTTTTGATGGAGCGGCATTAGACTGGTATCGATCGCACGAAGAACGCGATCCATTCAAAGATTGGGTGGAATTGAAGCAAAGACTACTGGTCCATTTCCGATTAGTAAGGGAAGGCCCCATTTGTGGACAATTCTTAGCGATCAAACAAGAGACGACGGTAGAGGAGTATTGCAACCTCTTCGATAAGTTAGTAGCACTGTTGCCTCATCTACTGAAGGAAGTATTAGAGGAAACCTTCATGAATGGGCTGACTCCATGGATCAAGGCTGAAGTTGAGTTCTGGGAGCCAGTTGGGCTGCCGCAAATGATAAAATTGACCCAACGAGTGGAGAATTGTGAAATTACACAAAGAGAAGCAAATCTAAAGAACATCGAAGGTAAGACCCAAACTAATTTTTCCATTCGTAGAGCTGTTAACCCATTAAGTATGAATGATAGTAAACCTGGAAACAACTTCCCTATGAGAACGATAACTTTGAGAGGGGTGACGGCTGGAGATAACCGGCGAAAAGGACCGGCGAAAAAGCTTTCTGATGTTGAATTTCAGGCACATAGGGACAAGGGGCTTTGTTTTCGATGTAAAGTTAAAGAACAGAGAGATTTAAGGATGTTTGTGGTTCGGGAGAATGATGAGGAAGTAGAAATTATTGAAGACGAAGATTATGAGAGGAATAAGGAGATGAAATTGTTGGAAGCAAAGGAAGAAACAAGGTCAGTTGTAGAGTTATCAGTAAACTCATTAGTTGGCCTGTCTAATCTTGGAACTATGAAGGTGGAAGGGAAAATTAAGGTAGAAGAAGTAATAGTATTGACCAATTGTTGTGCCACTCACGATTTCATATCTGAAAAATTAGTGTCATTCTTGCAAGAAGTAAACCTCTAA

Protein sequence

MLLAKNIEISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCNLFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENCEITQREANLKNIEGKTQTNFSIRRAVNPLSMNDSKPGNNFPMRTITLRGVTAGDNRRKGPAKKLSDVEFQAHRDKGLCFRCKVKEQRDLRMFVVRENDEEVEIIEDEDYERNKEMKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHDFISEKLVSFLQEVNL*
Homology
[Close]
BLAST of MELO3C023137 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.5e-45
Identity = 116/296 (39.19%), Postives = 175/296 (59.12%), Query Frame = 1 

Query: 9    ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
            +S DG AL WY+  + R+ F  W  LK+RLL+ FRL +EG +C QFLA++Q+ TV  Y  
Sbjct: 810  MSLDGDALSWYQWTDSREVFGSWENLKRRLLLRFRLTQEGSLCEQFLAVRQQGTVAAYWR 869

Query: 69   LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENCEITQRE 128
             F+ L   L  + +EV+E TFMNGL P I+AE    +P GL  ++++ QRVE+  +  R 
Sbjct: 870  EFEILETPLKGISEEVMESTFMNGLLPEIRAEQRLLQPYGLGHLMEMAQRVEDRNLAMRA 929

Query: 129  ANLKNIEGKTQTNFSIRRAVNPLSMNDSKPGNNFPMRTITLRGVTAGDNRRKGPAKKLSD 188
            A   N  G   T     + ++  +  + K G NF  R + + G      RR+ P K+L++
Sbjct: 930  AREPN--GPKST-----KMLSTANRGEWKIGENFQTRAVAV-GEKTMSQRREIPIKRLTE 989

Query: 189  VEFQAHRDKGLCFRCKVKE------QRDLRMFVVRENDEEVEIIEDEDYERNKEMKLLEA 248
             E QA R+KGL F+C+ K       +++LR+ +V E++EE +     D    +E  L+E 
Sbjct: 990  SELQARREKGLWFKCEEKFSPGHRCKKELRVLLVHEDEEEDD--NQFDDRATEEPALIEL 1049

Query: 249  KEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHDFISEKLVSFL 299
            K+     VELS+NS+VGL+  GTMK++G I  +EVI+L +  ATH+F+S +LV  L
Sbjct: 1050 KD----AVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQQL 1091

[Close]
BLAST of MELO3C023137 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 106/311 (34.08%), Postives = 168/311 (54.02%), Query Frame = 1 

Query: 9   ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
           +S +G  ++W+R  E R  F+ W ELK+R+   FR    G  C +FLAIKQE +V EY  
Sbjct: 108 VSLEGRGMNWFRWAENRKWFRSWKELKERMYNRFRCRDYGTACARFLAIKQEGSVSEYLQ 167

Query: 69  LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRV-ENCEITQ- 128
            F++L A LP + +EVLE TF NGL P I+ EV     VGL  +++  Q   E  E+T+ 
Sbjct: 168 KFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEVTKG 227

Query: 129 --------REANLKNIEGKTQTNFSIRRAVNPLS---MNDSKPGNNFPMRTITLRGVTAG 188
                   +EA   N+    +T  S    +  L+   +N +   N     T+       G
Sbjct: 228 GPYPYPYSKEAAKTNLGSSPKTFGSPPTKMVTLAKKVVNQTSNSNTSQSHTV------GG 287

Query: 189 DNRRKGPAKKLSDVEFQAHRDKGLCFRCKVK-------EQRDLRMFVVRENDEEVEIIED 248
             RR+   ++  D + QA ++KGLC+RC          + R+L++ VV +     ++I+ 
Sbjct: 288 GGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELKLCVVAD-----DLIDT 347

Query: 249 EDYERNKEMKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHD 300
           E  E + +  ++    E   +VELS++S+VGL+  GT K++GK++  EV+V+ +C ATH+
Sbjct: 348 EMSEEDNDGGMV----EIGPIVELSLSSVVGLTAPGTSKIKGKVEDREVVVMIDCGATHN 403

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BLAST of MELO3C023137 vs. TrEMBL
Match: A0A0D3A714_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.3e-35
Identity = 105/303 (34.65%), Postives = 165/303 (54.46%), Query Frame = 1 

Query: 5   KNIEISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVE 64
           +N+   FDG AL WYR   +R+PF+ W ++K ++L  +   ++     + L ++Q  TV 
Sbjct: 159 RNVRTCFDGEALLWYRWERDRNPFRSWNQMKYQVLEQYSSNKDTSAGERLLTLRQTGTVR 218

Query: 65  EYCNLFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENC-- 124
           EYC+ F  L    P L++EVLE  F+ GL   I+A V+ +EP GL ++++   +VE+   
Sbjct: 219 EYCSDFKNLAMNAPELMEEVLELAFIVGLNTKIRAGVKLFEPRGLQKLMETVTKVEDWSS 278

Query: 125 --EITQREANLKNIEGKTQTNFSIRRAVNPLSMNDSKPG---NNFPMRTITLRGVTAGDN 184
             E +  +    N  G + T+      V   + N SKPG    N   R+      T G  
Sbjct: 279 EGESSPPKGGRSNSLGLSTTSPKPNSGVQTTTPNRSKPGPVSTNPNNRSGGRATTTLG-- 338

Query: 185 RRKGPAKKLSDVEFQAHRDKGLCFRCKVK-------EQRDLRMFVVRENDEEVEIIEDED 244
           R K P ++L+  E    + +GLCF+C  K        +++L + V R++  E E++E   
Sbjct: 339 RLKPPFRRLTPEEVAKWQAEGLCFKCDEKWHRNHLCSKQELTVLVTRDDGSETELLE--- 398

Query: 245 YERNKEMKLLEAKEETRSVV-ELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHDF 293
                E   LE +EE  +VV E+S+NSLVGL++  TMK++GKI  EEV+VL +  A+H+F
Sbjct: 399 -----EPCELEEEEEVEAVVAEVSINSLVGLTSPKTMKLKGKIGTEEVVVLIDSGASHNF 451

[Close]
BLAST of MELO3C023137 vs. TrEMBL
Match: A0A087G289_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-31
Identity = 104/315 (33.02%), Postives = 159/315 (50.48%), Query Frame = 1 

Query: 5   KNIEISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPI-CGQ-FLAIKQETT 64
           + + + F   AL WY+  + R PF  W +LKQR+L +F  V  G +  GQ  L ++QE T
Sbjct: 46  QEVRVCFSEDALKWYKWEKHRRPFSSWDQLKQRILENF--VGSGDLNAGQRLLMLRQEGT 105

Query: 65  VEEYCNLFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMI-KLTQRVEN 124
           V EYC  F  L      + + +LE TFMNGL P I+  V+ + P  L QM+ K  Q  E 
Sbjct: 106 VREYCRDFIGLATNAQDVPEFILEWTFMNGLQPEIRTRVQTFAPKSLTQMMDKAKQVAEW 165

Query: 125 CEITQREANLKNIEGKTQTNFSIRRAVNPLSMNDSKP-GNNFPMRTITLRGVTAG----- 184
            +++ +       EG       + ++  P S    KP       + IT  G   G     
Sbjct: 166 TKVSAQPPRYYGGEGNKGGRLGLSKSTGPSSGTGQKPLAGLAATKPITTIGANKGVNTQR 225

Query: 185 -DNRRKG-------PAKKLSDVEFQAHRDKGLCFRCKVK-------EQRDLRMFVVREND 244
            DNR          P +KL+  E +  + +G+CFRC  K         ++  + +V+++ 
Sbjct: 226 IDNRNPNRMNRVMPPYRKLTQAEIEWRKAEGMCFRCDEKGHSRSQCPHKEYAVLIVQDDG 285

Query: 245 EEVEIIEDEDYERNKEMKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVL 296
            E+E  EDE  E       +EA  +T  V ELS+NS+VG+S+  T+K+ G I+ E VIV+
Sbjct: 286 SEIEW-EDEGGEEK-----IEAILDTAEVAELSLNSMVGISSPRTVKLRGSIRDEPVIVM 345

[Close]
BLAST of MELO3C023137 vs. TrEMBL
Match: A0A087G291_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-31
Identity = 104/315 (33.02%), Postives = 159/315 (50.48%), Query Frame = 1 

Query: 5   KNIEISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPI-CGQ-FLAIKQETT 64
           + + + F   AL WY+  + R PF  W +LKQR+L +F  V  G +  GQ  L ++QE T
Sbjct: 128 QEVRVCFSEDALKWYKWEKHRRPFSSWDQLKQRILENF--VGSGDLNAGQRLLMLRQEGT 187

Query: 65  VEEYCNLFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMI-KLTQRVEN 124
           V EYC  F  L      + + +LE TFMNGL P I+  V+ + P  L QM+ K  Q  E 
Sbjct: 188 VREYCRDFIGLATNAQDVPEFILEWTFMNGLQPEIRTRVQTFAPKSLTQMMDKAKQVAEW 247

Query: 125 CEITQREANLKNIEGKTQTNFSIRRAVNPLSMNDSKP-GNNFPMRTITLRGVTAG----- 184
            +++ +       EG       + ++  P S    KP       + IT  G   G     
Sbjct: 248 TKVSAQPPRYYGGEGNKGGRLGLSKSTGPSSGTGQKPLAGLAATKPITTIGANKGVNTQR 307

Query: 185 -DNRRKG-------PAKKLSDVEFQAHRDKGLCFRCKVK-------EQRDLRMFVVREND 244
            DNR          P +KL+  E +  + +G+CFRC  K         ++  + +V+++ 
Sbjct: 308 IDNRNPNRMNRVMPPYRKLTQAEIEWRKAEGMCFRCDEKGHSRSQCPHKEYAVLIVQDDG 367

Query: 245 EEVEIIEDEDYERNKEMKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVL 296
            E+E  EDE  E       +EA  +T  V ELS+NS+VG+S+  T+K+ G I+ E VIV+
Sbjct: 368 SEIEW-EDEGGEEK-----IEAILDTAEVAELSLNSMVGISSPRTVKLRGSIRDEPVIVM 427

[Close]
BLAST of MELO3C023137 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 3.5e-78
Identity = 159/302 (52.65%), Postives = 209/302 (69.21%), Query Frame = 1 

Query: 9   ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
           +SFDG AL+WYRS EERD F  W  +K+RLLV FR  ++G + GQFL IKQE+TVEEY N
Sbjct: 164 VSFDGPALNWYRSQEERDKFTSWSNMKERLLVRFRSNKDGTLSGQFLRIKQESTVEEYIN 223

Query: 69  LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENCEITQRE 128
           LFDK+VA +  L + V+E+TFMNGL PW+++EV F+ P GL +M+++ Q VEN EI + E
Sbjct: 224 LFDKMVAPVNDLPERVIEDTFMNGLLPWVRSEVVFYRPKGLAEMMEVAQMVENREIVRTE 283

Query: 129 ANLKNIEGKTQTN--FSIRRAVNPLSMNDSKPGNNFPMRTITLRGVTAGDNRRKGPAKKL 188
           A L    G   T    S R+A +     +SK   +FP+RTITLR     +NRR+G  K+L
Sbjct: 284 AKLNGYSGGRMTGQIGSNRKATSGGVAGESKSNTSFPIRTITLRSSAPTENRREGTYKRL 343

Query: 189 SDVEFQAHRDKGLCFR----------CKVKEQRDLRMFVVRENDEEVEIIEDEDYERNKE 248
            D EFQA ++KGLCFR          C++KEQR+LRMFVV E  EE EI+E+E  E  KE
Sbjct: 344 PDAEFQARKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEE--KE 403

Query: 249 MKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHDFISEKLVS 299
           +  +E  E+  +VVELS+NS+VGL++ GTMKV GK+  EEVI+L +C ATH+F+SEKLV 
Sbjct: 404 LGRIEVNEDITTVVELSINSVVGLNDPGTMKVRGKLLGEEVIILIDCGATHNFVSEKLVK 463

[Close]
BLAST of MELO3C023137 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 3.1e-71
Identity = 148/303 (48.84%), Postives = 204/303 (67.33%), Query Frame = 1 

Query: 9   ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
           ISFDG AL+W+RS EERD F  W  +K+RLL+ FR  ++G + GQFL IKQE TVEEY N
Sbjct: 164 ISFDGPALNWFRSQEERDKFTSWSNMKERLLIRFRSNKDGTLSGQFLRIKQEGTVEEYIN 223

Query: 69  LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENCEITQRE 128
           LFDK+VA +  L + V+ +TFMNGL PW+++EV F  P  L +M++  Q VEN EI + E
Sbjct: 224 LFDKMVAPVNDLPERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEAAQMVENREIARIE 283

Query: 129 ANLKNIEGKTQT---NFSIRRAVNPLSMNDSKPGNNFPMRTITLRGVTAGDNRRKGPAKK 188
           A +    G   T   N + + +   ++  D+K    FP+RTITLR     +N+R+G  K+
Sbjct: 284 AKMSGYSGGKITAYNNVAGKTSTGGVA-GDNKNNTVFPIRTITLRSSVPNENQREGTYKR 343

Query: 189 LSDVEFQAHRDKGLCFR----------CKVKEQRDLRMFVVRENDEEVEIIEDEDYERNK 248
           L D EFQA ++KGLCFR          C+++EQR+LRMFVV    +E EI+E+E+  R  
Sbjct: 344 LPDAEFQARKEKGLCFRCNEKYSADHKCRLREQRELRMFVVTAERDEYEIVEEENERR-- 403

Query: 249 EMKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHDFISEKLV 299
           E+  +E KE+  +VVELS+NS+VGL++ GTMKV GK+  EEV++L +C ATH+F+SEKLV
Sbjct: 404 ELSCIELKEDVTTVVELSINSVVGLNDPGTMKVRGKLFGEEVVILIDCGATHNFVSEKLV 463

[Close]
BLAST of MELO3C023137 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 4.5e-62
Identity = 132/277 (47.65%), Postives = 186/277 (67.15%), Query Frame = 1 

Query: 9   ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
           I FDG AL+WYR+ EER+ F  W  LK+RLL+ F+  REG   G+FL I+QETTVEEY N
Sbjct: 157 ICFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRN 216

Query: 69  LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENCEITQRE 128
           LFDKLVA L  +   V+EETFM+GL PWI+AEV    P GL +M++  Q VE+ E+ +  
Sbjct: 217 LFDKLVAPLSDVEDRVVEETFMSGLFPWIRAEVILCRPKGLAEMMRTAQLVEDREVLRNA 276

Query: 129 ANLKN-IEGKTQTNFSIRRAVNPLSMN-DSKPGNNFPMRTITLRGVTAGDNRRKGPAKKL 188
           ANL   I GK+ T  S          N ++K    FP+RTITL+   +G+ R++G +K+L
Sbjct: 277 ANLNGYIGGKSSTPTSTGTKHYYHQQNKENKANAPFPIRTITLKSPNSGETRKEGTSKRL 336

Query: 189 SDVEFQAHRDKGLCF----------RCKVKEQRDLRMFVVRENDEEVEIIEDEDYERNKE 248
            D EFQ  R+KGLCF          +CK++EQR+LRMFVV++N+EE+EI+E+ + +   E
Sbjct: 337 PDAEFQLRREKGLCFKCNEKYSADHKCKMREQRELRMFVVKDNNEELEIVEETETD-TAE 396

Query: 249 MKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIK 274
           ++ +E + +  + VELS+NS+VGL++ GTMKV G ++
Sbjct: 397 LRTVEVRPQATACVELSINSVVGLNDPGTMKVRGTLQ 432

[Close]
BLAST of MELO3C023137 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 190.3 bits (482), Expect = 5.0e-45
Identity = 116/296 (39.19%), Postives = 175/296 (59.12%), Query Frame = 1 

Query: 9    ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
            +S DG AL WY+  + R+ F  W  LK+RLL+ FRL +EG +C QFLA++Q+ TV  Y  
Sbjct: 810  MSLDGDALSWYQWTDSREVFGSWENLKRRLLLRFRLTQEGSLCEQFLAVRQQGTVAAYWR 869

Query: 69   LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRVENCEITQRE 128
             F+ L   L  + +EV+E TFMNGL P I+AE    +P GL  ++++ QRVE+  +  R 
Sbjct: 870  EFEILETPLKGISEEVMESTFMNGLLPEIRAEQRLLQPYGLGHLMEMAQRVEDRNLAMRA 929

Query: 129  ANLKNIEGKTQTNFSIRRAVNPLSMNDSKPGNNFPMRTITLRGVTAGDNRRKGPAKKLSD 188
            A   N  G   T     + ++  +  + K G NF  R + + G      RR+ P K+L++
Sbjct: 930  AREPN--GPKST-----KMLSTANRGEWKIGENFQTRAVAV-GEKTMSQRREIPIKRLTE 989

Query: 189  VEFQAHRDKGLCFRCKVKE------QRDLRMFVVRENDEEVEIIEDEDYERNKEMKLLEA 248
             E QA R+KGL F+C+ K       +++LR+ +V E++EE +     D    +E  L+E 
Sbjct: 990  SELQARREKGLWFKCEEKFSPGHRCKKELRVLLVHEDEEEDD--NQFDDRATEEPALIEL 1049

Query: 249  KEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHDFISEKLVSFL 299
            K+     VELS+NS+VGL+  GTMK++G I  +EVI+L +  ATH+F+S +LV  L
Sbjct: 1050 KD----AVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQQL 1091

[Close]
BLAST of MELO3C023137 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 159.5 bits (402), Expect = 9.5e-36
Identity = 106/311 (34.08%), Postives = 168/311 (54.02%), Query Frame = 1 

Query: 9   ISFDGAALDWYRSHEERDPFKDWVELKQRLLVHFRLVREGPICGQFLAIKQETTVEEYCN 68
           +S +G  ++W+R  E R  F+ W ELK+R+   FR    G  C +FLAIKQE +V EY  
Sbjct: 108 VSLEGRGMNWFRWAENRKWFRSWKELKERMYNRFRCRDYGTACARFLAIKQEGSVSEYLQ 167

Query: 69  LFDKLVALLPHLLKEVLEETFMNGLTPWIKAEVEFWEPVGLPQMIKLTQRV-ENCEITQ- 128
            F++L A LP + +EVLE TF NGL P I+ EV     VGL  +++  Q   E  E+T+ 
Sbjct: 168 KFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEVTKG 227

Query: 129 --------REANLKNIEGKTQTNFSIRRAVNPLS---MNDSKPGNNFPMRTITLRGVTAG 188
                   +EA   N+    +T  S    +  L+   +N +   N     T+       G
Sbjct: 228 GPYPYPYSKEAAKTNLGSSPKTFGSPPTKMVTLAKKVVNQTSNSNTSQSHTV------GG 287

Query: 189 DNRRKGPAKKLSDVEFQAHRDKGLCFRCKVK-------EQRDLRMFVVRENDEEVEIIED 248
             RR+   ++  D + QA ++KGLC+RC          + R+L++ VV +     ++I+ 
Sbjct: 288 GGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELKLCVVAD-----DLIDT 347

Query: 249 EDYERNKEMKLLEAKEETRSVVELSVNSLVGLSNLGTMKVEGKIKVEEVIVLTNCCATHD 300
           E  E + +  ++    E   +VELS++S+VGL+  GT K++GK++  EV+V+ +C ATH+
Sbjct: 348 EMSEEDNDGGMV----EIGPIVELSLSSVVGLTAPGTSKIKGKVEDREVVVMIDCGATHN 403

The following BLAST results are available for this feature:
BLAST of MELO3C023137 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B2I6_VITVI3.5e-4539.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
E5GC18_CUCME6.6e-3634.08Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0D3A714_BRAOL7.3e-3534.65Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A087G289_ARAAL3.8e-3133.02Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1[more]
A0A087G291_ARAAL3.8e-3133.02Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1[more]
BLAST of MELO3C023137 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119521|ref|XP_008459701.1|3.5e-7852.65PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659109397|ref|XP_008454696.1|3.1e-7148.84PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659134102|ref|XP_008467029.1|4.5e-6247.65PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|147854459|emb|CAN78588.1|5.0e-4539.19hypothetical protein VITISV_043911 [Vitis vinifera][more]
gi|307136175|gb|ADN34016.1|9.5e-3634.08ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006401 RNA catabolic process
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53572melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023137T1MELO3C023137T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53572MU53572transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 9..94
score: 3.3