MELO3C023135 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023135
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBEST Arabidopsis thaliana protein match is: structural maintenance of chrom s in 21 species: Archae - 0
Locationchr8 : 15299913 .. 15300407 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAAAAGGAAAAGAGAAGAAGAAGAGGCGAGACACAAGGAGAAGGCACGTAAAGAGGGCAATCGTCTCCGCCAAACATTCAAAGAGAAAAAGTTGGTGAAGATTCAAATTGTCCAAAAGAAAAAGAAGAAGGAACTCTCGCATCTAAGCGAGAAGGTTGAAGATCAGGCAACAAGGTATAAGGCCACTGAGAATCAAAAAGTAGATCACCTTGAGGTTGTGGCGGAAGAATTCAGCAAAGAAATAGAAAGAATGAGTCCATTGGAACCAAGGCTCTCGCCTAATGAGCCTAGACTCAAAGAAGTCGTCCAACCCAAGAAAAAGAAAAGCAAGGCGGGGACATCCAGACTTGAGGATGCCCTACAAGGTGGGATACTAAACGCCCAAGAGCTAGAAAAAATAATCAAAATTGAAAAGGGGCTGTTACGATTTAAGGCCTCATTGCCAGAATTCCTCTACAGGCCAAACAAGACATTAATTGTGAATTAA

mRNA sequence

ATGGAAGATAAAAGGAAAAGAGAAGAAGAAGAGGCGAGACACAAGGAGAAGGCACGTAAAGAGGGCAATCGTCTCCGCCAAACATTCAAAGAGAAAAAGTTGGTGAAGATTCAAATTGTCCAAAAGAAAAAGAAGAAGGAACTCTCGCATCTAAGCGAGAAGGTTGAAGATCAGGCAACAAGGTATAAGGCCACTGAGAATCAAAAAGTAGATCACCTTGAGGTTGTGGCGGAAGAATTCAGCAAAGAAATAGAAAGAATGAGTCCATTGGAACCAAGGCTCTCGCCTAATGAGCCTAGACTCAAAGAAGTCGTCCAACCCAAGAAAAAGAAAAGCAAGGCGGGGACATCCAGACTTGAGGATGCCCTACAAGGTGGGATACTAAACGCCCAAGAGCTAGAAAAAATAATCAAAATTGAAAAGGGGCTGTTACGATTTAAGGCCTCATTGCCAGAATTCCTCTACAGGCCAAACAAGACATTAATTGTGAATTAA

Coding sequence (CDS)

ATGGAAGATAAAAGGAAAAGAGAAGAAGAAGAGGCGAGACACAAGGAGAAGGCACGTAAAGAGGGCAATCGTCTCCGCCAAACATTCAAAGAGAAAAAGTTGGTGAAGATTCAAATTGTCCAAAAGAAAAAGAAGAAGGAACTCTCGCATCTAAGCGAGAAGGTTGAAGATCAGGCAACAAGGTATAAGGCCACTGAGAATCAAAAAGTAGATCACCTTGAGGTTGTGGCGGAAGAATTCAGCAAAGAAATAGAAAGAATGAGTCCATTGGAACCAAGGCTCTCGCCTAATGAGCCTAGACTCAAAGAAGTCGTCCAACCCAAGAAAAAGAAAAGCAAGGCGGGGACATCCAGACTTGAGGATGCCCTACAAGGTGGGATACTAAACGCCCAAGAGCTAGAAAAAATAATCAAAATTGAAAAGGGGCTGTTACGATTTAAGGCCTCATTGCCAGAATTCCTCTACAGGCCAAACAAGACATTAATTGTGAATTAA

Protein sequence

MEDKRKREEEEARHKEKARKEGNRLRQTFKEKKLVKIQIVQKKKKKELSHLSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRLEDALQGGILNAQELEKIIKIEKGLLRFKASLPEFLYRPNKTLIVN*
Homology
[Close]
BLAST of MELO3C023135 vs. TrEMBL
Match: A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1 

Query: 32  KKLVKIQIVQKKKKKELSHLSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLE 91
           KK V+  +V+ ++++E        ++   + K  +N++VD L+VV E+F +E ER SPL+
Sbjct: 46  KKKVEEVVVESQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLK 105

Query: 92  PRLSPNEPRLKEVVQPKKKKSKAGTSRLEDALQGGILNAQELEKIIKIEK 142
           PR  P E +L +  QPKK K +AGTSRLED  +    +AQEL K+IK EK
Sbjct: 106 PRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 155

[Close]
BLAST of MELO3C023135 vs. TrEMBL
Match: A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.1e-14
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 

Query: 33  KLVKIQIVQKKKKKELSHLSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLEP 92
           K  KIQ  +KKK +EL+ LS+++E    R KA + ++VD L+VV  E  KEIERMSPLEP
Sbjct: 4   KFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPLEP 63

Query: 93  RLSPNEPRLKEVVQPKKKKSKAGTSRLEDALQGGILNA 131
           R+   E RL +  + KK K   G S+ EDA    +L+A
Sbjct: 64  RIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 101

[Close]
BLAST of MELO3C023135 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.6e-13
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1 

Query: 13  RHKEKARKEGNRLRQTFKEK------------KLVKIQIVQKKKKKELSHLSEKVEDQAT 72
           R KEKAR+E   LRQ   +K            KL +++  ++ K   L+ LSE+V   A 
Sbjct: 6   REKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVAA 65

Query: 73  RYKATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRLE 132
             +  +  ++DHL++V EE S+EIERMSP E      +P L       K+++KAGTS+  
Sbjct: 66  VNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAGTSK-- 125

Query: 133 DALQGGILNAQELEKIIKIEKGLLRFKASLPEFLYRPNKTL 162
              +GG             +KGLL F   LP+FL+R  K L
Sbjct: 126 --QKGG-------------KKGLLSFNGLLPDFLHRSIKAL 149

[Close]
BLAST of MELO3C023135 vs. TrEMBL
Match: A0A0F6QP14_9ASTR (Ycf1 protein OS=Adenophora remotiflora GN=ycf1 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-08
Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1 

Query: 4    KRKREEEEARHKEKARKEGNRLRQTFKEKKLVKIQIVQKKKKKELSHLSEKVEDQATRYK 63
            K K+E +E R K K RK+G R R+  + KK  K ++ +KK+KK L     +++++  +  
Sbjct: 1068 KGKKERKEKREKRKERKKGKRERKEDRRKKRRKERLERKKRKKWLERKERRIDEKERK-- 1127

Query: 64   ATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRLEDAL 123
                ++ + LE    + S+E+ER S LE +   NE   ++  QP + K   G    ED  
Sbjct: 1128 ----KRKERLEREKTKPSRELERFSKLETKRRKNEKEKEDEDQPGELKIVQGMELWED-- 1187

Query: 124  QGGILNAQELEKIIKIEKGLLRFKASLPEFLYRPN 159
               + NA  +  ++ + +  LR K +LP  +   N
Sbjct: 1188 --NVDNALGIRTVLLLCQEFLRRKVTLPSLIILKN 1212

[Close]
BLAST of MELO3C023135 vs. TrEMBL
Match: A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 68  QKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRLEDA 123
           Q+VD L+VVAEE  KEIERMSPLEPRL P +  L +    KK K K G SR + A
Sbjct: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]
BLAST of MELO3C023135 vs. NCBI nr
Match: gi|659102436|ref|XP_008452128.1| (PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 1   MEDKRKREEEEARHKEKARKEGN--RLRQTFKEKK------------LVKIQIVQKKKKK 60
           ME+K+ RE+ +A+   K RKEG   RL QTF+EKK            L KIQ  +K + K
Sbjct: 1   MEEKQNREKTKAK---KTRKEGEDARLCQTFQEKKKNVESLAEMKEKLAKIQTAKKVETK 60

Query: 61  ELSHLSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQ 120
           EL+   ++VE    + +ATENQKV+ LEVVA EF +E+  +SPL+PRLSP    L+ +  
Sbjct: 61  ELAKFDDQVEGLEMKNEATENQKVNCLEVVAAEFQEEVPNISPLKPRLSPEASGLRAIKT 120

Query: 121 PKKKKSKAGTSRLEDA 123
            K KK+K GTS+ +DA
Sbjct: 121 KKTKKTKPGTSKPKDA 133

[Close]
BLAST of MELO3C023135 vs. NCBI nr
Match: gi|700194396|gb|KGN49573.1| (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1 

Query: 32  KKLVKIQIVQKKKKKELSHLSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLE 91
           KK V+  +V+ ++++E        ++   + K  +N++VD L+VV E+F +E ER SPL+
Sbjct: 46  KKKVEEVVVESQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLK 105

Query: 92  PRLSPNEPRLKEVVQPKKKKSKAGTSRLEDALQGGILNAQELEKIIKIEK 142
           PR  P E +L +  QPKK K +AGTSRLED  +    +AQEL K+IK EK
Sbjct: 106 PRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 155

[Close]
BLAST of MELO3C023135 vs. NCBI nr
Match: gi|700202590|gb|KGN57723.1| (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.3e-14
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 

Query: 33  KLVKIQIVQKKKKKELSHLSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLEP 92
           K  KIQ  +KKK +EL+ LS+++E    R KA + ++VD L+VV  E  KEIERMSPLEP
Sbjct: 4   KFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPLEP 63

Query: 93  RLSPNEPRLKEVVQPKKKKSKAGTSRLEDALQGGILNA 131
           R+   E RL +  + KK K   G S+ EDA    +L+A
Sbjct: 64  RIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 101

[Close]
BLAST of MELO3C023135 vs. NCBI nr
Match: gi|700202631|gb|KGN57764.1| (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 8.0e-13
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1 

Query: 13  RHKEKARKEGNRLRQTFKEK------------KLVKIQIVQKKKKKELSHLSEKVEDQAT 72
           R KEKAR+E   LRQ   +K            KL +++  ++ K   L+ LSE+V   A 
Sbjct: 6   REKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVAA 65

Query: 73  RYKATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRLE 132
             +  +  ++DHL++V EE S+EIERMSP E      +P L       K+++KAGTS+  
Sbjct: 66  VNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAGTSK-- 125

Query: 133 DALQGGILNAQELEKIIKIEKGLLRFKASLPEFLYRPNKTL 162
              +GG             +KGLL F   LP+FL+R  K L
Sbjct: 126 --QKGG-------------KKGLLSFNGLLPDFLHRSIKAL 149

[Close]
BLAST of MELO3C023135 vs. NCBI nr
Match: gi|817530501|ref|YP_009137000.1| (Ycf1 protein (chloroplast) [Adenophora remotiflora])

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-08
Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1 

Query: 4    KRKREEEEARHKEKARKEGNRLRQTFKEKKLVKIQIVQKKKKKELSHLSEKVEDQATRYK 63
            K K+E +E R K K RK+G R R+  + KK  K ++ +KK+KK L     +++++  +  
Sbjct: 1068 KGKKERKEKREKRKERKKGKRERKEDRRKKRRKERLERKKRKKWLERKERRIDEKERK-- 1127

Query: 64   ATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRLEDAL 123
                ++ + LE    + S+E+ER S LE +   NE   ++  QP + K   G    ED  
Sbjct: 1128 ----KRKERLEREKTKPSRELERFSKLETKRRKNEKEKEDEDQPGELKIVQGMELWED-- 1187

Query: 124  QGGILNAQELEKIIKIEKGLLRFKASLPEFLYRPN 159
               + NA  +  ++ + +  LR K +LP  +   N
Sbjct: 1188 --NVDNALGIRTVLLLCQEFLRRKVTLPSLIILKN 1212

The following BLAST results are available for this feature:
BLAST of MELO3C023135 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ65_CUCSA1.7e-1442.73Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1[more]
A0A0A0L7E0_CUCSA5.1e-1446.94Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263210 PE=4 SV=1[more]
A0A0A0L9V9_CUCSA5.6e-1335.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1[more]
A0A0F6QP14_9ASTR5.4e-0829.03Ycf1 protein OS=Adenophora remotiflora GN=ycf1 PE=4 SV=1[more]
A0A0A0KAB8_CUCSA7.8e-0758.18Uncharacterized protein OS=Cucumis sativus GN=Csa_6G119890 PE=4 SV=1[more]
BLAST of MELO3C023135 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102436|ref|XP_008452128.1|1.7e-1845.59PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo][more]
gi|700194396|gb|KGN49573.1|2.5e-1442.73hypothetical protein Csa_5G003650 [Cucumis sativus][more]
gi|700202590|gb|KGN57723.1|7.3e-1446.94hypothetical protein Csa_3G263210 [Cucumis sativus][more]
gi|700202631|gb|KGN57764.1|8.0e-1335.40hypothetical protein Csa_3G283010 [Cucumis sativus][more]
gi|817530501|ref|YP_009137000.1|7.8e-0829.03Ycf1 protein (chloroplast) [Adenophora remotiflora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023135T1MELO3C023135T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 1..21
score: -coord: 48..68
scor