MELO3C023134.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023134.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr08 : 17568083 .. 17568310 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTTGTCGCATGCCCCTAAGCATGTGTGGATAAAAGAGGAAGAGGTCACACTAGTGGAGTGTTTGGTGGAGTTGGTACCCGTAGTTGGATGGAAGTCAGACAACGGCACGTTCCAACCAGGTTATGTGGCCCAACTTGTCCGAATGATGACTGTAAAGTTTCCTGAATGTCTTGTCCAAGCCACTACTGTTGTAGACTGCCGAATAAAGACATTGAAGTGA

mRNA sequence

ATGGCAAGTTTGTCGCATGCCCCTAAGCATGTGTGGATAAAAGAGGAAGAGGTCACACTAGTGGAGTGTTTGGTGGAGTTGGTACCCGTAGTTGGATGGAAGTCAGACAACGGCACGTTCCAACCAGGTTATGTGGCCCAACTTGTCCGAATGATGACTGTAAAGTTTCCTGAATGTCTTGTCCAAGCCACTACTGTTGTAGACTGCCGAATAAAGACATTGAAGTGA

Coding sequence (CDS)

ATGGCAAGTTTGTCGCATGCCCCTAAGCATGTGTGGATAAAAGAGGAAGAGGTCACACTAGTGGAGTGTTTGGTGGAGTTGGTACCCGTAGTTGGATGGAAGTCAGACAACGGCACGTTCCAACCAGGTTATGTGGCCCAACTTGTCCGAATGATGACTGTAAAGTTTCCTGAATGTCTTGTCCAAGCCACTACTGTTGTAGACTGCCGAATAAAGACATTGAAGTGA

Protein sequence

MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECLVQATTVVDCRIKTLK
Homology
[Close]
BLAST of MELO3C023134.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 1  MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
          MASLS APKH W KEEE   VECLVELV   GW+SDNGTFQPGY+AQL RMM  K P   
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VQATTVVDCRIKTLK 76
          +Q ++ +DC +K+LK
Sbjct: 61 IQESSTIDCHVKSLK 75

[Close]
BLAST of MELO3C023134.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.0 bits (227), Expect = 9.0e-16
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1   MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
           M S S  PKH W KEEE  LVECLVELV   GW+SDNGTF+PGY+ QL RMM  K P   
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VQATTVVDCRIKTLK 76
           + A+T +D RIK +K
Sbjct: 416 IHAST-IDSRIKLMK 429

[Close]
BLAST of MELO3C023134.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 1  MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
          M S S  PKH W KEEE +    LVELV   GW+SDNGTF PGY+ QL RMM  K P C 
Sbjct: 1  MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61 VQATTVVDCRIKTLK 76
          + A+T +D RIK LK
Sbjct: 61 IHAST-IDSRIKLLK 70

[Close]
BLAST of MELO3C023134.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.0 bits (201), Expect = 9.3e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 23  CLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECLVQATTVVDCRIKTLK 76
           C +ELV + GWKSDNGTF+PGY+AQLVRMM  K   C V+ATTV+DCRIKTLK
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLK 392

[Close]
BLAST of MELO3C023134.2 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1  MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
          MAS S   KH+WIKE++ TLVECLV+LV   GW SDNGTF  GY +QL RMM  K     
Sbjct: 1  MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61 VQATTVVDCRIKTLK 76
          +QATT+  C IKT++
Sbjct: 61 IQATTIDSC-IKTME 74

[Close]
BLAST of MELO3C023134.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 1  MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
          MASLS APKH W KEEE   VECLVELV   GW+SDNGTFQPGY+AQL RMM  K P   
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VQATTVVDCRIKTLK 76
          +Q ++ +DC +K+LK
Sbjct: 61 IQESSTIDCHVKSLK 75

[Close]
BLAST of MELO3C023134.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.9e-16
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1   MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
           M S S  PKH W KEEE  LVECLVELV   GW+SDNGTF+PGY+ QL RMM  K P   
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VQATTVVDCRIKTLK 76
           + A+T +D RIK +K
Sbjct: 416 IHAST-IDSRIKLMK 429

[Close]
BLAST of MELO3C023134.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-13
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 1  MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
          M S S  PKH W KEEE +    LVELV   GW+SDNGTF PGY+ QL RMM  K P C 
Sbjct: 1  MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61 VQATTVVDCRIKTLK 76
          + A+T +D RIK LK
Sbjct: 61 IHAST-IDSRIKLLK 70

[Close]
BLAST of MELO3C023134.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 23  CLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECLVQATTVVDCRIKTLK 76
           C +ELV + GWKSDNGTF+PGY+AQLVRMM  K   C V+ATTV+DCRIKTLK
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLK 392

[Close]
BLAST of MELO3C023134.2 vs. TrEMBL
Match: tr|E5GBS5|E5GBS5_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 1  MASLSHAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKFPECL 60
          MAS S   KH+WIKE++ TLVECLV+LV   GW SDNGTF  GY +QL RMM  K     
Sbjct: 1  MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61 VQATTVVDCRIKTLK 76
          +QATT+  C IKT++
Sbjct: 61 IQATTIDSC-IKTME 74

The following BLAST results are available for this feature:
BLAST of MELO3C023134.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441954.12.3e-1964.00PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.19.0e-1660.00retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008459131.14.2e-1357.33PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
ADN33754.19.3e-1371.70retrotransposon protein [Cucumis melo subsp. melo][more]
ADN33917.11.6e-1257.33hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C023134.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C023134.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C023134.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.5e-1964.00uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME5.9e-1660.00Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME2.8e-1357.33uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|E5GBB2|E5GBB2_CUCME6.1e-1371.70Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|E5GBS5|E5GBS5_CUCME1.0e-1257.33Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023134.2.1MELO3C023134.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023134.2Cucumber (Chinese Long) v3cucmedB322
MELO3C023134.2Watermelon (97103) v2medwmbB535
MELO3C023134.2Wax gourdmedwgoB649
MELO3C023134.2Cucumber (Gy14) v2cgybmedB281
MELO3C023134.2Cucumber (Gy14) v1cgymedB605
MELO3C023134.2Cucurbita maxima (Rimu)cmamedB701
MELO3C023134.2Cucurbita maxima (Rimu)cmamedB708
MELO3C023134.2Cucurbita maxima (Rimu)cmamedB908
MELO3C023134.2Cucurbita moschata (Rifu)cmomedB691
MELO3C023134.2Cucurbita moschata (Rifu)cmomedB699
MELO3C023134.2Cucurbita moschata (Rifu)cmomedB898
MELO3C023134.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C023134.2Cucurbita pepo (Zucchini)cpemedB085
MELO3C023134.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C023134.2Wild cucumber (PI 183967)cpimedB315
MELO3C023134.2Cucumber (Chinese Long) v2cumedB313
MELO3C023134.2Bottle gourd (USVL1VR-Ls)lsimedB166
MELO3C023134.2Watermelon (Charleston Gray)medwcgB530
MELO3C023134.2Watermelon (97103) v1medwmB568
MELO3C023134.2Silver-seed gourdcarmedB0199
MELO3C023134.2Silver-seed gourdcarmedB0200
MELO3C023134.2Silver-seed gourdcarmedB0299