MELO3C023130 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023130
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RING finger protein 115
Location	chr8 : 15244354 .. 15245152 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCTCTACTTCTTCTTCCTTCCAATGTTCTTTTTCCGCCACTCCAAACACCGATCACTTCCTCATTTGTCGATTTGGGTATTCCAGCCGTCTCATCATTGTAGATCAAATACTGCAACAGACTCCCTCAATCCTCATGGGGGAAACTCTGATTCCTTTCTCTAATCTCTGGCATCCTGAACAACAACAATCAATTGAGTTTTTGGTTAATGAGTTTCTGGGTTCATTCAACCTCCATTCCTTTGCTTCTGCCCGCCGAACCATTTGTCGTAAGATTCTCTCCTTTGCTCTACAGTTTCATAACGTTCATGGGAGCTTCAAAATAGAAGCCAACGTCGAGCATGTGGAGGACTTGATCATCGGAGAGCAAGGATTTCAAGAAACTCCTTCCCCGCCAAGGACAACAGGGGCGCCGGAGTCTGCGATTGAGAGACTAAGGAAGGAGAAATTTGATGTATTAAATAAAGAAGAAGAAATTGGAGATTGCAGTGTTTGTTATGAAGAGCTGAAAGGACAAGGGAAGGAGGTGAGTAGGATACCATGTGGTCATGTGTATCACAAATCATGCATTCTCACTTGGCTTCAAATCAACAACTCTTGCCCACTGTGTAGAGCACCATTACAACCATGAACACTTTCTTCATTTTGCTTTTGAGAATTATCTTAATTCTCTTCCATTTTTTTTATTCTTTTAGAATTCTTATGCAAATGTAATTTTGTGCTCTCTTCCTTTCCAATGTAAGTTGGTACAAATATATATTTTGTCTAACTATTGATTGATACAGATTTGGGAG

mRNA sequence

ATGTCTCTCTCTACTTCTTCTTCCTTCCAATGTTCTTTTTCCGCCACTCCAAACACCGATCACTTCCTCATTTGTCGATTTGGGTATTCCAGCCGTCTCATCATTGTAGATCAAATACTGCAACAGACTCCCTCAATCCTCATGGGGGAAACTCTGATTCCTTTCTCTAATCTCTGGCATCCTGAACAACAACAATCAATTGAGTTTTTGGTTAATGAGTTTCTGGGTTCATTCAACCTCCATTCCTTTGCTTCTGCCCGCCGAACCATTTGTCGTAAGATTCTCTCCTTTGCTCTACAGTTTCATAACGTTCATGGGAGCTTCAAAATAGAAGCCAACGTCGAGCATGTGGAGGACTTGATCATCGGAGAGCAAGGATTTCAAGAAACTCCTTCCCCGCCAAGGACAACAGGGGCGCCGGAGTCTGCGATTGAGAGACTAAGGAAGGAGAAATTTGATGTATTAAATAAAGAAGAAGAAATTGGAGATTGCAGTGTTTGTTATGAAGAGCTGAAAGGACAAGGGAAGGAGGTGAGTAGGATACCATGTGGTCATGTGTATCACAAATCATGCATTCTCACTTGGCTTCAAATCAACAACTCTTGCCCACTGTGTAGAGCACCATTACAACCATGAACACTTTCTTCATTTTGCTTTTGAGAATTATCTTAATTCTCTTCCATTTTTTTTATTCTTTTAGAATTCTTATGCAAATGTAATTTTGTGCTCTCTTCCTTTCCAATGTAAGTTGGTACAAATATATATTTTGTCTAACTATTGATTGATACAGATTTGGGAG

Coding sequence (CDS)

ATGTCTCTCTCTACTTCTTCTTCCTTCCAATGTTCTTTTTCCGCCACTCCAAACACCGATCACTTCCTCATTTGTCGATTTGGGTATTCCAGCCGTCTCATCATTGTAGATCAAATACTGCAACAGACTCCCTCAATCCTCATGGGGGAAACTCTGATTCCTTTCTCTAATCTCTGGCATCCTGAACAACAACAATCAATTGAGTTTTTGGTTAATGAGTTTCTGGGTTCATTCAACCTCCATTCCTTTGCTTCTGCCCGCCGAACCATTTGTCGTAAGATTCTCTCCTTTGCTCTACAGTTTCATAACGTTCATGGGAGCTTCAAAATAGAAGCCAACGTCGAGCATGTGGAGGACTTGATCATCGGAGAGCAAGGATTTCAAGAAACTCCTTCCCCGCCAAGGACAACAGGGGCGCCGGAGTCTGCGATTGAGAGACTAAGGAAGGAGAAATTTGATGTATTAAATAAAGAAGAAGAAATTGGAGATTGCAGTGTTTGTTATGAAGAGCTGAAAGGACAAGGGAAGGAGGTGAGTAGGATACCATGTGGTCATGTGTATCACAAATCATGCATTCTCACTTGGCTTCAAATCAACAACTCTTGCCCACTGTGTAGAGCACCATTACAACCATGA

Protein sequence

MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLIIVDQILQQTPSILMGETLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQP*

Homology

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BLAST of MELO3C023130 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.9e-13
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 95  LSFALQFHNVHGSFKIEANVEH------VEDLIIGEQGFQETPSPPRTTGAPESAIERLR 154
           + F +Q +     F++ AN+        +E LI  +Q  +  P+   T  A +SAIE L 
Sbjct: 151 IEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLI--QQLAENDPNRYGTPPASKSAIEALP 210

Query: 155 KEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAP 210
                  N   E   C+VC ++ + +G E  ++PC H+YHK C+L WL+++NSCP+CR  
Sbjct: 211 LVNITKSNLNSEFNQCAVCMDDFE-EGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHE 268

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BLAST of MELO3C023130 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-11
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1


Query: 117 VEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGK 176
           +E LI  +Q  +  P+   T  A +SAI+ L   K      + E+  C+VC +E +  G 
Sbjct: 171 LEQLI--QQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFE-DGS 230

Query: 177 EVSRIPCGHVYHKSCILTWLQINNSCPLCRAPL 210
           +V ++PC HV+H+ C+L WL+++NSCP+CR  L
Sbjct: 231 DVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

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BLAST of MELO3C023130 vs. Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 139 APESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQI 198
           APE  I +++ +K      +EE G+C++C E  K    +V ++PC H +H++CI  WL++
Sbjct: 372 APEDVIAKMKVQKPPKELIDEE-GECTICMEMFK-INDDVIQLPCKHYFHENCIKPWLRV 431

Query: 199 NNSCPLCRAPLQP 212
           N +C +CRAP+ P
Sbjct: 432 NGTCAICRAPVDP 442

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BLAST of MELO3C023130 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-09
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 1


Query: 139 APESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQI 198
           AP SAI+ L   K    +      +C VC +E +  G E  ++PC H+YH  CI+ WL  
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFE-LGSEAKQMPCNHIYHSDCIVPWLVQ 224

Query: 199 NNSCPLCRAPL 210
           +NSCP+CR  L
Sbjct: 225 HNSCPVCRQEL 234

[Close]

BLAST of MELO3C023130 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-09
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1


Query: 142 SAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNS 201
           + +E++    + V   E  + +CSVC  E +   +      CGHV+H  CI TW +  +S
Sbjct: 91  TVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSS 150

Query: 202 CPLCRAPLQP 212
           CPLCRAP+QP
Sbjct: 151 CPLCRAPVQP 160

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BLAST of MELO3C023130 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53
Identity = 124/233 (53.22%), Postives = 151/233 (64.81%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLI--------IVDQILQQTPSILMGETL 60
           MS S +S  QCSFS  PNTD  LI R  + SRLI        + D IL+QTP  L+GE L
Sbjct: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60

Query: 61  IPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEA 120
              SNL +P QQQ +E++VNEFL SFNL S  S  R +   ILSFA QF   +  FKIE 
Sbjct: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRS--SVCRIVSHNILSFAQQFDINNECFKIET 120

Query: 121 NVEHVEDL------------IIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLN--KE 180
           NV+++++              +GE+G      PPR  GA ESAIER++K+KFD     +E
Sbjct: 121 NVDYIKEYWTEAAPELYPISTVGEEGL-----PPR--GASESAIERVKKQKFDGFRGEEE 180

Query: 181 EEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQP 212
           EEIGDCSVC EE+K +G EV RIPCGHVYHKSCIL WL+I+NSCPLCRA L+P
Sbjct: 181 EEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]

BLAST of MELO3C023130 vs. TrEMBL
Match: A0A0A0L1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539600 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 49  GETLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSF 108
           G TLI FSNL HP QQQSI FLVN+FL  FNLHS  S  + IC KILSFALQF  +  SF
Sbjct: 39  GNTLILFSNLLHPRQQQSIHFLVNQFLCFFNLHS--SVFQIICYKILSFALQFCAIPPSF 98

Query: 109 KIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEE 160
           KIEAN+ +++DLIIGEQGFQETP PPRTTG PE AIERL  +KFD  NKEE
Sbjct: 99  KIEANIANMDDLIIGEQGFQETPPPPRTTGVPEFAIERLMTQKFDGFNKEE 147

[Close]

BLAST of MELO3C023130 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 91/225 (40.44%), Postives = 124/225 (55.11%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGE 60
           MS  T+ SF+CS     N           F+  R G+ S+L++    QILQQT  IL+ +
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  TLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSF 120
           TLI F      +        +  FL S+N+    +    I  KI SFA Q    N++ +F
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISD--AVCDAIFLKISSFAFQLVAGNLNSNF 120

Query: 121 KIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCY 180
            I A ++ V    +     ++  +  +  GAP SAIERL KEK+D    EE   +CSVCY
Sbjct: 121 HIIAALDFVYTHWVDLDPAEDAAAVRQ--GAPRSAIERLMKEKYDGNGGEEMEDECSVCY 180

Query: 181 EELKGQG---KEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 211
           E+L G+    KEVSRIPCGH++HKSCIL WL+I+NSCPLCR  L+
Sbjct: 181 EDLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of MELO3C023130 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.6e-28
Identity = 96/235 (40.85%), Postives = 128/235 (54.47%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNTD--------HFLICRFGYSSRLIIV--DQILQQTPSILMGE 60
           MSL  + SFQCS      +          F+  R  +  +L+     QILQQT   L+ +
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  TLIPFSNLWHPEQQQSIE-FLVNEFLGSFNLHSFASARRTICRKILSFALQF-----HNV 120
           TLIPFS LW  E    I  F +  FL S+++   A+    I   I SFA Q       N+
Sbjct: 61  TLIPFS-LWELEDPPFISYFFLFRFLSSYDIS--AAVCDAIFYNISSFAGQILLAADSNI 120

Query: 121 HGSFKIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGD- 180
           + +F I A+V+ V    +     ++ P+  +  GA  S IER+ KEK+D    EE+ GD 
Sbjct: 121 NVNFHIIADVDIVYTHWVDLDPAEDAPAVRK--GASTSVIERVMKEKYDGNGGEEKEGDD 180

Query: 181 -CSVCYEELKGQG-------KEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 211
            CSVCYE+L G+        KEVSRIPCGH+YHKSCIL WL+I+NSCPLCR  L+
Sbjct: 181 QCSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELE 230

[Close]

BLAST of MELO3C023130 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNT-DHFLI-CRFGYSSRLI--IVDQILQQTPSILMGETLIPFS 60
           MS +T+ S  C   + P T D  L+  R    S+L+    +Q +QQT    +   L  F 
Sbjct: 1   MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 60

Query: 61  NLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFH--NVHGSFKIEANV 120
               PE +     L ++FL  F   + ++A   I   I SFALQ    N++ +F + A V
Sbjct: 61  L---PELELENPSLFHDFLLQFLSPADSAA---IFHNISSFALQLAAGNLNLNFHLIATV 120

Query: 121 EHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIG-DCSVCYEEL-- 180
           + +  + I         SPP   G P S +ERL  EK+D  N  E +G  C VCYE+L  
Sbjct: 121 DLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 180

Query: 181 --KGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRA 208
             + + +E +RIPCGHVYHKSCIL WL +NNSCPLCR+
Sbjct: 181 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRS 212

[Close]

BLAST of MELO3C023130 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 1


Query: 103 NVHGSFKIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIG 162
           N H  F   +++E + + +  +    + P PP    A E  I  L   K    +   ++ 
Sbjct: 170 NSHDYFTGASSLEQLIEQLTQD----DRPGPPP---ASEPTINSLPSVKITPQHLTNDMS 229

Query: 163 DCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPL 210
            C+VC EE    G + + +PC H+YHK CI+ WL++NNSCP+CR  L
Sbjct: 230 QCTVCMEEFI-VGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDL 268

[Close]

BLAST of MELO3C023130 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1


Query: 117 VEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGK 176
           +E LI  +Q  +  P+   T  A +SAI+ L   K      + E+  C+VC +E +  G 
Sbjct: 171 LEQLI--QQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFE-DGS 230

Query: 177 EVSRIPCGHVYHKSCILTWLQINNSCPLCRAPL 210
           +V ++PC HV+H+ C+L WL+++NSCP+CR  L
Sbjct: 231 DVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]

BLAST of MELO3C023130 vs. TAIR10
Match: AT5G60820.1 (AT5G60820.1 RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 153 DVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPL 210
           DV+  +++   C+VC EE+   GKEV+ +PC H YH  CI+ WL I N+CP+CR  L
Sbjct: 361 DVMENDDDAVCCAVCKEEMI-VGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFEL 416

[Close]

BLAST of MELO3C023130 vs. TAIR10
Match: AT5G24870.1 (AT5G24870.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1


Query: 101 FHNVHGSFKIEANVEHVEDLIIGEQ--GFQETP-SPPRTTGAPESAIERLRKEKFDV-LN 160
           FH+ H   +++ +    E+L+  E+  G   T  S      + +S+I R   E  D+ LN
Sbjct: 402 FHDQHRDMRLDIDNMSYEELLALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLN 461

Query: 161 KEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCR 207
           K++++  CS+C EE    G EV  +PC H YH SC   WL++ N CP+C+
Sbjct: 462 KDDDV-KCSICQEEYV-DGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICK 509

[Close]

BLAST of MELO3C023130 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 1


Query: 139 APESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQI 198
           AP SAI+ L   K    +      +C VC +E +  G E  ++PC H+YH  CI+ WL  
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFE-LGSEAKQMPCNHIYHSDCIVPWLVQ 224

Query: 199 NNSCPLCRAPL 210
           +NSCP+CR  L
Sbjct: 225 HNSCPVCRQEL 234

[Close]

BLAST of MELO3C023130 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 435.6 bits (1119), Expect = 4.8e-119
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLIIVDQILQQTPSILMGETLIPFSNLWH 60
           MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLIIVDQILQQTPSILMGETLIPFSNLWH
Sbjct: 1   MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLIIVDQILQQTPSILMGETLIPFSNLWH 60

Query: 61  PEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEANVEHVEDL 120
           PEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEANVEHVEDL
Sbjct: 61  PEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEANVEHVEDL 120

Query: 121 IIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSR 180
           IIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSR
Sbjct: 121 IIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSR 180

Query: 181 IPCGHVYHKSCILTWLQINNSCPLCRAPLQP 212
           IPCGHVYHKSCILTWLQINNSCPLCRAPLQP
Sbjct: 181 IPCGHVYHKSCILTWLQINNSCPLCRAPLQP 211

[Close]

BLAST of MELO3C023130 vs. NCBI nr
Match: gi|659083325|ref|XP_008442291.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 7.8e-69
Identity = 136/166 (81.93%), Postives = 147/166 (88.55%), Query Frame = 1


Query: 48  MGETLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGS 107
           MG+TLIPFSNL HP QQQSI+FLVN+FL SFNLHS  S RRTIC +ILSFALQF  +  S
Sbjct: 1   MGDTLIPFSNLRHPRQQQSIQFLVNQFLCSFNLHS--SVRRTICHEILSFALQFRAILPS 60

Query: 108 FKIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERL-RKEKFDVLNKEEE--IGDC 167
           FKIEAN++HVEDLIIGEQGFQETP PPRT GAPESAIERL  K+KFD  NKEEE  IGDC
Sbjct: 61  FKIEANIDHVEDLIIGEQGFQETP-PPRTRGAPESAIERLIMKQKFDGFNKEEEEEIGDC 120

Query: 168 SVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 211
           SVCYEELKG+GKEVSRIPCGHVYHKSC+LTWLQINNSCPLCRAPL+
Sbjct: 121 SVCYEELKGKGKEVSRIPCGHVYHKSCVLTWLQINNSCPLCRAPLE 163

[Close]

BLAST of MELO3C023130 vs. NCBI nr
Match: gi|449442467|ref|XP_004139003.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 124/233 (53.22%), Postives = 151/233 (64.81%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLI--------IVDQILQQTPSILMGETL 60
           MS S +S  QCSFS  PNTD  LI R  + SRLI        + D IL+QTP  L+GE L
Sbjct: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60

Query: 61  IPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEA 120
              SNL +P QQQ +E++VNEFL SFNL S  S  R +   ILSFA QF   +  FKIE 
Sbjct: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRS--SVCRIVSHNILSFAQQFDINNECFKIET 120

Query: 121 NVEHVEDL------------IIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLN--KE 180
           NV+++++              +GE+G      PPR  GA ESAIER++K+KFD     +E
Sbjct: 121 NVDYIKEYWTEAAPELYPISTVGEEGL-----PPR--GASESAIERVKKQKFDGFRGEEE 180

Query: 181 EEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQP 212
           EEIGDCSVC EE+K +G EV RIPCGHVYHKSCIL WL+I+NSCPLCRA L+P
Sbjct: 181 EEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]

BLAST of MELO3C023130 vs. NCBI nr
Match: gi|659114890|ref|XP_008457277.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-52
Identity = 125/233 (53.65%), Postives = 150/233 (64.38%), Query Frame = 1


Query: 1   MSLSTSSSFQCSFSATPNTDHFLICRFGYSSRLI--------IVDQILQQTPSILMGETL 60
           MS S +S  +CSFS  PNTD  LI RFG  SRLI        I D IL+QTP  L+GE L
Sbjct: 1   MSFSATSCLECSFSGYPNTDQTLIVRFGSCSRLISQSPSPEIIPDVILEQTPFTLIGEAL 60

Query: 61  IPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSFKIEA 120
              SNL  P QQQ +++LVNEFL SFNL S  S  R I   ILSFA QF   +   KIEA
Sbjct: 61  FSLSNLRCPLQQQELQYLVNEFLHSFNLRS--SVCRIISHNILSFAQQFDINNEWVKIEA 120

Query: 121 NVEHVEDL------------IIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEEE 180
           NV+H+++              +GE+G       PR  GA ESAIER++K+K D  ++EEE
Sbjct: 121 NVDHIKEYWTEAPPELNPISTVGEEGLS-----PR--GASESAIERVKKQKLDWFSEEEE 180

Query: 181 --IGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQP 212
             IGDC VC EE+K +G+EV RIPCGHVYHKSCIL WL+I+NSCPLCRA L+P
Sbjct: 181 EEIGDCCVCCEEMKRKGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]

BLAST of MELO3C023130 vs. NCBI nr
Match: gi|700199686|gb|KGN54844.1| (hypothetical protein Csa_4G539600 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 49  GETLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSF 108
           G TLI FSNL HP QQQSI FLVN+FL  FNLHS  S  + IC KILSFALQF  +  SF
Sbjct: 39  GNTLILFSNLLHPRQQQSIHFLVNQFLCFFNLHS--SVFQIICYKILSFALQFCAIPPSF 98

Query: 109 KIEANVEHVEDLIIGEQGFQETPSPPRTTGAPESAIERLRKEKFDVLNKEE 160
           KIEAN+ +++DLIIGEQGFQETP PPRTTG PE AIERL  +KFD  NKEE
Sbjct: 99  KIEANIANMDDLIIGEQGFQETPPPPRTTGVPEFAIERLMTQKFDGFNKEE 147

The following BLAST results are available for this feature:

BLAST of MELO3C023130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RING1_GOSHI	7.9e-13	33.88	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RNG1L_ARATH	5.7e-11	37.63	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
YKW3_SCHPO	1.8e-09	38.36	Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra...	[more]
RHC1A_ARATH	3.1e-09	40.85	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2...	[more]
ATL5_ARATH	5.3e-09	38.57	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1	[more]

BLAST of MELO3C023130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS2_CUCSA	1.4e-53	53.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0L1B0_CUCSA	1.8e-32	70.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539600 PE=4 SV=1	[more]
A0A0A0LRB0_CUCSA	3.6e-28	40.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	4.6e-28	40.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	2.5e-21	38.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]

BLAST of MELO3C023130 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60360.1	3.2e-12	33.64	RING/U-box superfamily protein	[more]
AT3G19950.1	3.2e-12	37.63	RING/U-box superfamily protein	[more]
AT5G60820.1	1.3e-10	47.37	RING/U-box superfamily protein	[more]
AT5G24870.1	1.8e-10	34.55	RING/U-box superfamily protein	[more]
AT2G40830.2	1.8e-10	40.85	RING-H2 finger C1A	[more]

BLAST of MELO3C023130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121671\|ref\|XP_008460768.1\|	4.8e-119	100.00	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|659083325\|ref\|XP_008442291.1\|	7.8e-69	81.93	PREDICTED: RING finger protein 165-like [Cucumis melo]	[more]
gi\|449442467\|ref\|XP_004139003.1\|	2.1e-53	53.22	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus]	[more]
gi\|659114890\|ref\|XP_008457277.1\|	3.9e-52	53.65	PREDICTED: RING finger protein 165-like [Cucumis melo]	[more]
gi\|700199686\|gb\|KGN54844.1\|	2.6e-32	70.27	hypothetical protein Csa_4G539600 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023130T1	MELO3C023130T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 163..206 score: 6.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 164..205 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 164..206 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 160..207 score: 1.9
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 32..67 score: 1.8E-18coord: 124..210 score: 1.8
None	No IPR available	PANTHER	PTHR22763:SF39	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 32..67 score: 1.8E-18coord: 124..210 score: 1.8
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 157..209 score: 2.29

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023130	Bhi03G002162	Wax gourd	mewgoB658

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023130	Silver-seed gourd	carmeB0196
MELO3C023130	Silver-seed gourd	carmeB0285
MELO3C023130	Silver-seed gourd	carmeB0288
MELO3C023130	Cucumber (Chinese Long) v3	cucmeB338
MELO3C023130	Watermelon (97103) v2	mewmbB534
MELO3C023130	Wax gourd	mewgoB646
MELO3C023130	Cucurbita maxima (Rimu)	cmameB613
MELO3C023130	Cucurbita maxima (Rimu)	cmameB621
MELO3C023130	Cucurbita maxima (Rimu)	cmameB805
MELO3C023130	Cucurbita maxima (Rimu)	cmameB810
MELO3C023130	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023130	Cucurbita moschata (Rifu)	cmomeB609
MELO3C023130	Cucurbita moschata (Rifu)	cmomeB789
MELO3C023130	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023130	Wild cucumber (PI 183967)	cpimeB332
MELO3C023130	Cucumber (Chinese Long) v2	cumeB331
MELO3C023130	Watermelon (Charleston Gray)	mewcgB526
MELO3C023130	Watermelon (97103) v1	mewmB589
MELO3C023130	Cucurbita pepo (Zucchini)	cpemeB064
MELO3C023130	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023130	Cucurbita pepo (Zucchini)	cpemeB465
MELO3C023130	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023130	Cucumber (Gy14) v2	cgybmeB287