MELO3C023124 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023124
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribonucleoside-diphosphate reductase
Location	chr8 : 15060833 .. 15061825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAAGCACAGTTACTCTGGTACCTTAAACCTCTTCACGCGTTTTTCGGCTGAATGCACGATTCACCAAAATTAAGCTGCAAGCACACCCAACACCGAAACTTCTCCCTGCCATTTAACATTCATTCGTTAGTCACCATCTCTCAACCGAGCTCGATTTTACCACAGTGTCGGATCTGACCATTTTTATTTTATCCTCTATCCTCTATCTTCATTTTTTTTACCTTTTGTTTTGATCTGGGTTTTTCTAATTGGTTTTCGATTTTTTTCTAGCAGATAAGAGATTGGAAAGATTGCAGACAGAATATCAGAGGTGAAGAGATTTAAGAAGAATGCAAGAATGGTTGTGGGGAATTTAGAATGGAGGCTGTGGGTTATAAGGAATTTGAGGCCATGAGTTTCAAGTAATTTCTTCCCTCTTTATTCTTAGAAGAAATGTATATATGTTGTGAAGGAATTTCTTACTCTGGGTTTTGCTTATTCTCAATATTTTCTTTCTCTTTAGGCCCTTACAACGTAAAGATGCTTGATTTTGAGGGTTTTGTTTATTCTCAATAGTTTATTGTTATTTACATTGTATTTTCACATCATATATGTCTAATATGATGGAATACACTCAAATGGATATGCATATGATGTGAGTTTGATAGAAATTTCTGTATTTTGGGATTTTACTCGTTTCGTTTGTCTTATCTACTTTGTTAATTTGTGTTTTAGTTCATTTAATATTCTAGTTTATTGCTGCACACAACATGTTCGACAGAATTCCTCAGTTAGATTATTCTTCCAACGATGTATATGGTGAAACGAGATGGTCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGATAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

mRNA sequence

AAGCAAGCACAGTTACTCTGGTACCTTAAACCTCTTCACGCGTTTTTCGGCTGAATGCACGATTCACCAAAATTAAGCTGCAAGCACACCCAACACCGAAACTTCTCCCTGCCATTTAACATTCATTCATAAGAGATTGGAAAGATTGCAGACAGAATATCAGAGGTGAAGAGATTTAAGAAGAATGCAAGAATGGTTGTGGGGAATTTAGAATGGAGGCTGTGGGTTATAAGGAATTTGAGGCCATGAGTTTCAAAATTCCTCAGTTAGATTATTCTTCCAACGATGTATATGGTGAAACGAGATGGTCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGATAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

Coding sequence (CDS)

ATGTATATGGTGAAACGAGATGGTCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGATAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

Protein sequence

MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMNWPLKWLLL*

Homology

[Close]

BLAST of MELO3C023124 vs. Swiss-Prot
Match: RIR1_ARATH (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-18
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQE VHFDKITARLKKLSYGL+ D CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. Swiss-Prot
Match: RIR1_CAEEL (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-12
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 2  YMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMN 59
          Y+VKRDGR+E VHFDKIT+R++KLSYGLN+D  DPV V+  V  G+YKG+    L N
Sbjct: 8  YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDN 64

[Close]

BLAST of MELO3C023124 vs. Swiss-Prot
Match: RIR1_NEUCR (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+ KRDGRQE V FDKITAR+ +L YGL+++  DPV ++Q V  GVY G+  A L
Sbjct: 1  MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQL 56

[Close]

BLAST of MELO3C023124 vs. Swiss-Prot
Match: RIR1_DROME (Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMN 59
          +Y++KRDGRQE VHFDKIT+R++KL Y LN+D  DPV ++  V  G+Y G+    L N
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDN 69

[Close]

BLAST of MELO3C023124 vs. Swiss-Prot
Match: RIR1_SCHPO (Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc22 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-10
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMN 59
          M++ KRDGRQE V FDKITAR+ +L YGL+ D  DPV ++Q V  GVY G+    L N
Sbjct: 1  MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDN 58

[Close]

BLAST of MELO3C023124 vs. TrEMBL
Match: A0A0A0KJ45_CUCSA (Ribonucleoside-diphosphate reductase OS=Cucumis sativus GN=Csa_6G486750 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQ VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. TrEMBL
Match: A0A0D2QNE5_GOSRA (Ribonucleoside-diphosphate reductase OS=Gossypium raimondii GN=B456_003G048900 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. TrEMBL
Match: A0A061DIE7_THECC (Ribonucleoside-diphosphate reductase OS=Theobroma cacao GN=TCM_001302 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. TrEMBL
Match: A0A0D2QFR9_GOSRA (Ribonucleoside-diphosphate reductase OS=Gossypium raimondii GN=B456_003G048900 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. TrEMBL
Match: A0A061DJ55_THECC (Ribonucleoside-diphosphate reductase OS=Theobroma cacao GN=TCM_001302 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. TAIR10
Match: AT2G21790.1 (AT2G21790.1 ribonucleotide reductase 1)

HSP 1 Score: 92.8 bits (229), Expect = 8.5e-20
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQE VHFDKITARLKKLSYGL+ D CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. NCBI nr
Match: gi|449448442|ref|XP_004141975.1| (PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQ VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. NCBI nr
Match: gi|659080801|ref|XP_008440987.1| (PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQ VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. NCBI nr
Match: gi|147775539|emb|CAN71697.1| (hypothetical protein VITISV_003192 [Vitis vinifera])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQE+VHFDKITARLKKLSYGL+ID CDPVLVSQ VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. NCBI nr
Match: gi|225438479|ref|XP_002278202.1| (PREDICTED: ribonucleoside-diphosphate reductase large subunit [Vitis vinifera])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQE+VHFDKITARLKKLSYGL+ID CDPVLVSQ VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]

BLAST of MELO3C023124 vs. NCBI nr
Match: gi|823134170|ref|XP_012466909.1| (PREDICTED: ribonucleoside-diphosphate reductase large subunit [Gossypium raimondii])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLV+Q VC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQL 56

The following BLAST results are available for this feature:

BLAST of MELO3C023124 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIR1_ARATH	1.5e-18	76.79	Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RN...	[more]
RIR1_CAEEL	1.2e-12	61.40	Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=...	[more]
RIR1_NEUCR	5.2e-11	57.14	Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain AT...	[more]
RIR1_DROME	6.8e-11	53.45	Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN...	[more]
RIR1_SCHPO	2.6e-10	55.17	Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (s...	[more]

BLAST of MELO3C023124 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ45_CUCSA	5.2e-18	82.14	Ribonucleoside-diphosphate reductase OS=Cucumis sativus GN=Csa_6G486750 PE=3 SV=...	[more]
A0A0D2QNE5_GOSRA	1.2e-17	80.36	Ribonucleoside-diphosphate reductase OS=Gossypium raimondii GN=B456_003G048900 P...	[more]
A0A061DIE7_THECC	1.2e-17	80.36	Ribonucleoside-diphosphate reductase OS=Theobroma cacao GN=TCM_001302 PE=3 SV=1	[more]
A0A0D2QFR9_GOSRA	1.2e-17	80.36	Ribonucleoside-diphosphate reductase OS=Gossypium raimondii GN=B456_003G048900 P...	[more]
A0A061DJ55_THECC	1.2e-17	80.36	Ribonucleoside-diphosphate reductase OS=Theobroma cacao GN=TCM_001302 PE=3 SV=1	[more]

BLAST of MELO3C023124 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21790.1	8.5e-20	76.79	ribonucleotide reductase 1	[more]

BLAST of MELO3C023124 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448442\|ref\|XP_004141975.1\|	7.5e-18	82.14	PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis sativus]	[more]
gi\|659080801\|ref\|XP_008440987.1\|	7.5e-18	82.14	PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis melo]	[more]
gi\|147775539\|emb\|CAN71697.1\|	1.7e-17	80.36	hypothetical protein VITISV_003192 [Vitis vinifera]	[more]
gi\|225438479\|ref\|XP_002278202.1\|	1.7e-17	80.36	PREDICTED: ribonucleoside-diphosphate reductase large subunit [Vitis vinifera]	[more]
gi\|823134170\|ref\|XP_012466909.1\|	1.7e-17	80.36	PREDICTED: ribonucleoside-diphosphate reductase large subunit [Gossypium raimond...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005144	ATP-cone_dom
IPR008926	RNR_R1-su_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0009186	deoxyribonucleoside diphosphate metabolic process
biological_process	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process
biological_process	GO:0009263	deoxyribonucleotide biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005971	ribonucleoside-diphosphate reductase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023124T1	MELO3C023124T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005144	ATP-cone domain	PFAM	PF03477	ATP-cone	coord: 1..51 score: 4.
IPR005144	ATP-cone domain	PROFILE	PS51161	ATP_CONE	coord: 1..66 score: 9
IPR008926	Ribonucleotide reductase R1 subunit, N-terminal	unknown	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain	coord: 6..62 score: 4.1
None	No IPR available	PANTHER	PTHR11573	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	coord: 2..51 score: 1.1
None	No IPR available	PANTHER	PTHR11573:SF16	SUBFAMILY NOT NAMED	coord: 2..51 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023124	Cucumber (Chinese Long) v3	cucmeB338
MELO3C023124	Wax gourd	mewgoB646
MELO3C023124	Cucumber (Gy14) v1	cgymeB287
MELO3C023124	Cucurbita maxima (Rimu)	cmameB613
MELO3C023124	Cucurbita maxima (Rimu)	cmameB621
MELO3C023124	Cucurbita maxima (Rimu)	cmameB805
MELO3C023124	Cucurbita maxima (Rimu)	cmameB810
MELO3C023124	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023124	Cucurbita moschata (Rifu)	cmomeB609
MELO3C023124	Cucurbita moschata (Rifu)	cmomeB789
MELO3C023124	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023124	Wild cucumber (PI 183967)	cpimeB332
MELO3C023124	Cucumber (Chinese Long) v2	cumeB331
MELO3C023124	Cucurbita pepo (Zucchini)	cpemeB064
MELO3C023124	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023124	Cucurbita pepo (Zucchini)	cpemeB465
MELO3C023124	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023124	Cucumber (Gy14) v2	cgybmeB287
MELO3C023124	Silver-seed gourd	carmeB0196
MELO3C023124	Silver-seed gourd	carmeB0285
MELO3C023124	Silver-seed gourd	carmeB0288