MELO3C023122 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023122
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Phage capsid scaffolding protein (GPO) serine peptidase
Location	chr8 : 15058880 .. 15059191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGCGAGAAGAGCTCCAAAGTAAAGTAGATAAGGTAGCTCTCTCCACGGAGAAGAGAAAAAGAAAAGGAAAAGAAAAGATCTCCAAGGAGTTTTACGAAGAGGTGGAAAAAGAAGTTGAAGAGTTAAGTCCTTTGGAGGACGAAGTGCCAAAGCCTATGAAAAAAAGGAAATTTATAATGAAAAAGAAGGCTTTGAGGGAACAATTTAGAAAGAGGCGAGAAGAGAAAGAAAGAAGCAAGATTGAAAAAGACAAGGGCAAACTGATGAAAGCGGGATGGATGAGCTCTTCTTTGCAAAGAGAGTGA

mRNA sequence

ATGAAGGGGCGAGAAGAGCTCCAAAGTAAAGTAGATAAGGTAGCTCTCTCCACGGAGAAGAGAAAAAGAAAAGGAAAAGAAAAGATCTCCAAGGAGTTTTACGAAGAGGTGGAAAAAGAAGTTGAAGAGTTAAGTCCTTTGGAGGACGAAGTGCCAAAGCCTATGAAAAAAAGGAAATTTATAATGAAAAAGAAGGCTTTGAGGGAACAATTTAGAAAGAGGCGAGAAGAGAAAGAAAGAAGCAAGATTGAAAAAGACAAGGGCAAACTGATGAAAGCGGGATGGATGAGCTCTTCTTTGCAAAGAGAGTGA

Coding sequence (CDS)

ATGAAGGGGCGAGAAGAGCTCCAAAGTAAAGTAGATAAGGTAGCTCTCTCCACGGAGAAGAGAAAAAGAAAAGGAAAAGAAAAGATCTCCAAGGAGTTTTACGAAGAGGTGGAAAAAGAAGTTGAAGAGTTAAGTCCTTTGGAGGACGAAGTGCCAAAGCCTATGAAAAAAAGGAAATTTATAATGAAAAAGAAGGCTTTGAGGGAACAATTTAGAAAGAGGCGAGAAGAGAAAGAAAGAAGCAAGATTGAAAAAGACAAGGGCAAACTGATGAAAGCGGGATGGATGAGCTCTTCTTTGCAAAGAGAGTGA

Protein sequence

MKGREELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKFIMKKKALREQFRKRREEKERSKIEKDKGKLMKAGWMSSSLQRE*

Homology

[Close]

BLAST of MELO3C023122 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 1  MKGREELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKF 60
          ++ ++EL +K+D+  +ST  +K K ++  S+E  EE E+++E+LSPLEDEV KP+KK K 
Sbjct: 17 LREQKELLNKIDQAPIST--KKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKK-KV 76

Query: 61 IMKKKALREQFRKRREEKERSK 83
           +KK  L++QF KRREEKE+ K
Sbjct: 77 TVKKSVLKKQFDKRREEKEKKK 95

[Close]

BLAST of MELO3C023122 vs. TrEMBL
Match: A0A0A0LNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-09
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 5   EELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKFIMKK 64
           EEL SK D+VALS EK K K KEK  +E  EE+EKE+  +S LE+E P+  +KR   + K
Sbjct: 30  EELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEKEIGHMSSLEEEAPR-RQKRISKVSK 89

Query: 65  KALREQFRKRREEKERSKIEKD 87
             L  Q   RR+ K++  ++KD
Sbjct: 90  NFLHAQVEMRRKAKDKEALQKD 110

[Close]

BLAST of MELO3C023122 vs. TrEMBL
Match: A0A0A0K4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 31 KEFYEEVEKEVEELSPLEDEVPKPMKKRKFIMKKKALREQFRKR 75
          +E +EE E+++E+LSPLEDEV KP+KK+K  + KK L+EQF KR
Sbjct: 6  EEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQFVKR 49

[Close]

BLAST of MELO3C023122 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-16
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = 1


Query: 5   EELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDE-VPKPMKKRKFIMK 64
           EEL +KVDK+ALS EK K K  EK  +EFY+E EKE++E SPLED  V +P KKR   MK
Sbjct: 50  EELLNKVDKLALSVEKGKEK--EKTFEEFYKEFEKEIDEFSPLEDNVVERPAKKRNVTMK 109

Query: 65  KKALREQFRKRREEKERSKIEKDKGKLMKAGWMSSSL 101
           KK LR+QF KRR+EK+R   +K+  K ++      SL
Sbjct: 110 KKVLRDQFAKRRKEKKRRGPQKESEKEVERSEKEGSL 144

[Close]

BLAST of MELO3C023122 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 1   MKGREELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKF 60
           ++ REEL  KVD VALS EK K +  EK  +  YEE EKE+++L PLE++V +P KKR F
Sbjct: 98  LREREELLGKVDNVALSAEKDKCE--EKNFEVHYEEFEKEIDKLCPLEEKVIRPAKKRTF 157

Query: 61  IMKKKALREQFRKRREEKERSKIEKD 87
            MKKKALR+QF KRR E+ + K +KD
Sbjct: 158 TMKKKALRKQFAKRRVEEMKRKPKKD 181

[Close]

BLAST of MELO3C023122 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-11
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 1  MKGREELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKF 60
          ++ ++EL +K+D+  +ST  +K K ++  S+E  EE E+++E+LSPLEDEV KP+KK K 
Sbjct: 17 LREQKELLNKIDQAPIST--KKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKK-KV 76

Query: 61 IMKKKALREQFRKRREEKERSK 83
           +KK  L++QF KRREEKE+ K
Sbjct: 77 TVKKSVLKKQFDKRREEKEKKK 95

[Close]

BLAST of MELO3C023122 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-10
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1


Query: 1   MKGREELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKF 60
           ++ +EEL +KVDKVALS EKRK   +EK  +E  EE +KE+EELSPLEDEV +   K+K 
Sbjct: 66  LREKEELLNKVDKVALSVEKRK---EEKTFEEHCEEFKKEIEELSPLEDEVVEKSSKKKR 125

Query: 61  IMKKKALREQFRKRREEKERSKIEKDKGK 90
           IM+ +   ++ ++++E+K + + E  +GK
Sbjct: 126 IMEGQ--DDKRKEKKEKKAQQEEESQEGK 149

[Close]

BLAST of MELO3C023122 vs. NCBI nr
Match: gi|700206372|gb|KGN61491.1| (hypothetical protein Csa_2G145900 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 5   EELQSKVDKVALSTEKRKRKGKEKISKEFYEEVEKEVEELSPLEDEVPKPMKKRKFIMKK 64
           EEL SK D+VALS EK K K KEK  +E  EE+EKE+  +S LE+E P+  +KR   + K
Sbjct: 30  EELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEKEIGHMSSLEEEAPR-RQKRISKVSK 89

Query: 65  KALREQFRKRREEKERSKIEKD 87
             L  Q   RR+ K++  ++KD
Sbjct: 90  NFLHAQVEMRRKAKDKEALQKD 110

The following BLAST results are available for this feature:

BLAST of MELO3C023122 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W9_CUCSA	4.3e-11	48.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1	[more]
A0A0A0LNF9_CUCSA	9.0e-09	46.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1	[more]
A0A0A0K4R7_CUCSA	5.5e-06	59.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1	[more]

BLAST of MELO3C023122 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083323\|ref\|XP_008442290.1\|	8.4e-16	53.61	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659090014\|ref\|XP_008445787.1\|	2.1e-14	55.81	PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo]	[more]
gi\|700189199\|gb\|KGN44432.1\|	6.2e-11	48.78	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]
gi\|659130998\|ref\|XP_008465464.1\|	6.8e-10	46.07	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|700206372\|gb\|KGN61491.1\|	1.3e-08	46.34	hypothetical protein Csa_2G145900 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023122T1	MELO3C023122T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 64..84 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023122	Cucumber (Chinese Long) v3	cucmeB338
MELO3C023122	Wax gourd	mewgoB646
MELO3C023122	Cucumber (Gy14) v1	cgymeB287
MELO3C023122	Cucurbita maxima (Rimu)	cmameB613
MELO3C023122	Cucurbita maxima (Rimu)	cmameB621
MELO3C023122	Cucurbita maxima (Rimu)	cmameB805
MELO3C023122	Cucurbita maxima (Rimu)	cmameB810
MELO3C023122	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023122	Cucurbita moschata (Rifu)	cmomeB609
MELO3C023122	Cucurbita moschata (Rifu)	cmomeB789
MELO3C023122	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023122	Wild cucumber (PI 183967)	cpimeB332
MELO3C023122	Cucumber (Chinese Long) v2	cumeB331
MELO3C023122	Cucurbita pepo (Zucchini)	cpemeB064
MELO3C023122	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023122	Cucurbita pepo (Zucchini)	cpemeB465
MELO3C023122	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023122	Cucumber (Gy14) v2	cgybmeB287
MELO3C023122	Silver-seed gourd	carmeB0196
MELO3C023122	Silver-seed gourd	carmeB0285
MELO3C023122	Silver-seed gourd	carmeB0288