MELO3C023113 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023113
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr8 : 14966410 .. 14966649 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGGAGCAGTATGACCAGAAATTTGATATACTATCCCGCTTTACTCCTAAGTTAGTAGAGACTGAGGCTGCTAGAGCCGACAGATTTGTCAGGGATCTTAGGTTGGACCTCCAGAGTTCCATTCGAGCTTTCAGGCCAGCTACCCAAGCTGATGCACTACGCCCAATAGTGGACATGAGTTTGCATGAAAGGGTTGATATTTCCAAGACTTCAGAGAAGGGGTCAACTTTATGA

mRNA sequence

ATGATTGTGGAGCAGTATGACCAGAAATTTGATATACTATCCCGCTTTACTCCTAAGTTAGTAGAGACTGAGGCTGCTAGAGCCGACAGATTTGTCAGGGATCTTAGGTTGGACCTCCAGAGTTCCATTCGAGCTTTCAGGCCAGCTACCCAAGCTGATGCACTACGCCCAATAGTGGACATGAGTTTGCATGAAAGGGTTGATATTTCCAAGACTTCAGAGAAGGGGTCAACTTTATGA

Coding sequence (CDS)

ATGATTGTGGAGCAGTATGACCAGAAATTTGATATACTATCCCGCTTTACTCCTAAGTTAGTAGAGACTGAGGCTGCTAGAGCCGACAGATTTGTCAGGGATCTTAGGTTGGACCTCCAGAGTTCCATTCGAGCTTTCAGGCCAGCTACCCAAGCTGATGCACTACGCCCAATAGTGGACATGAGTTTGCATGAAAGGGTTGATATTTCCAAGACTTCAGAGAAGGGGTCAACTTTATGA

Protein sequence

MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVDMSLHERVDISKTSEKGSTL*
Homology
[Close]
BLAST of MELO3C023113 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VEQYD +FD+LSRF P+++ TEAARAD+FVR LRLD+Q  +RAFRPAT ADALR  VD
Sbjct: 438 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 497

Query: 61  MSLHERVDISKTSEKGST 79
           +SL ER + SKT+ +GST
Sbjct: 498 LSLQERANSSKTAGRGST 515

[Close]
BLAST of MELO3C023113 vs. TrEMBL
Match: Q84KB1_CUCME (Gag-protease polyprotein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VEQYD +FD+LSRF P+++ TEAARAD+FVR LRLD+Q  +RAFRPAT ADALR  VD
Sbjct: 166 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 225

Query: 61  MSLHERVDISKTSEKGST 79
           +SL ER + SKT+ +GST
Sbjct: 226 LSLQERANSSKTAGRGST 243

[Close]
BLAST of MELO3C023113 vs. TrEMBL
Match: E5GB72_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-14
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VE+YD +FD+LS F P+LVETEAARA  FV  LR DLQ  +RAF+PATQ +AL   +D
Sbjct: 190 MTVEEYDYEFDMLSLFAPELVETEAARAKMFVWGLRKDLQGFVRAFKPATQTEALYLALD 249

Query: 61  MSLHERVDISKTSEKGSTL 80
           +S+ +  D+ K S KG  L
Sbjct: 250 LSVQKDDDLLKVSRKGPFL 268

[Close]
BLAST of MELO3C023113 vs. TrEMBL
Match: B0F820_CUCME (Putative uncharacterized protein OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-13
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALR 57
           M VEQYD +FD+LSRF P+++  EAARAD+FVR LRLD+Q  +RAFRPAT ADALR
Sbjct: 149 MTVEQYDAEFDMLSRFAPEMIAAEAARADKFVRGLRLDIQCLVRAFRPATHADALR 204

[Close]
BLAST of MELO3C023113 vs. NCBI nr
Match: gi|307135903|gb|ADN33767.1| (gag protease polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VEQYD +FD+LSRF P+++ TEAARAD+FVR LRLD+Q  +RAFRPAT ADALR  VD
Sbjct: 438 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 497

Query: 61  MSLHERVDISKTSEKGST 79
           +SL ER + SKT+ +GST
Sbjct: 498 LSLQERANSSKTAGRGST 515

[Close]
BLAST of MELO3C023113 vs. NCBI nr
Match: gi|28558780|gb|AAO45751.1| (gag-protease polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VEQYD +FD+LSRF P+++ TEAARAD+FVR LRLD+Q  +RAFRPAT ADALR  VD
Sbjct: 166 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 225

Query: 61  MSLHERVDISKTSEKGST 79
           +SL ER + SKT+ +GST
Sbjct: 226 LSLQERANSSKTAGRGST 243

[Close]
BLAST of MELO3C023113 vs. NCBI nr
Match: gi|778674077|ref|XP_011650126.1| (PREDICTED: uncharacterized protein LOC105434723 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-19
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1 

Query: 1  MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
          M VEQYDQ+FD+LS F  +LV+ EA RA++FVR  + +LQ  +RAFRP TQ +ALR IVD
Sbjct: 1  MTVEQYDQEFDMLSHFASELVKIEADRAEKFVRGFKFELQGFVRAFRPTTQVEALRLIVD 60

Query: 61 MSLHERVDISKTSEKGSTL 80
          +S+HERVD++KT E GSTL
Sbjct: 61 ISMHERVDLTKTLENGSTL 79

[Close]
BLAST of MELO3C023113 vs. NCBI nr
Match: gi|659111274|ref|XP_008455666.1| (PREDICTED: uncharacterized protein LOC103495779 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VEQYD +FD+LSRF+P +V  EA R  +FV DLRLDL   +R FRP T  DALR +VD
Sbjct: 65  MTVEQYDVEFDMLSRFSPDIVRNEAVRTKKFVSDLRLDLLGFVRVFRPTTTVDALRLVVD 124

Query: 61  MSLHERVDISKTSEKGST 79
            SLH+R D SK + +GST
Sbjct: 125 KSLHKRADTSKAARRGST 142

[Close]
BLAST of MELO3C023113 vs. NCBI nr
Match: gi|659083337|ref|XP_008442300.1| (PREDICTED: uncharacterized protein LOC103486213 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-17
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1   MIVEQYDQKFDILSRFTPKLVETEAARADRFVRDLRLDLQSSIRAFRPATQADALRPIVD 60
           M VEQYD +FD+LSRFTP + + E A+  +FV+ LRLDLQ  +RAFRP T ADALR  +D
Sbjct: 65  MTVEQYDAEFDMLSRFTPNVTKDEEAKTKKFVKGLRLDLQGIVRAFRPTTHADALRLALD 124

Query: 61  MSLHERVDISKTSEKGSTL 80
           ++LHER  +SK + +GS L
Sbjct: 125 LNLHERAGLSKAAGRGSAL 143

The following BLAST results are available for this feature:
BLAST of MELO3C023113 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB7_CUCME1.3e-2066.67Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Q84KB1_CUCME1.3e-2066.67Gag-protease polyprotein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB72_CUCME7.1e-1455.70Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
B0F820_CUCME1.6e-1369.64Putative uncharacterized protein OS=Cucumis melo PE=4 SV=1[more]
BLAST of MELO3C023113 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135903|gb|ADN33767.1|1.9e-2066.67gag protease polyprotein [Cucumis melo subsp. melo][more]
gi|28558780|gb|AAO45751.1|1.9e-2066.67gag-protease polyprotein [Cucumis melo subsp. melo][more]
gi|778674077|ref|XP_011650126.1|4.8e-1962.03PREDICTED: uncharacterized protein LOC105434723 [Cucumis sativus][more]
gi|659111274|ref|XP_008455666.1|4.4e-1758.97PREDICTED: uncharacterized protein LOC103495779 [Cucumis melo][more]
gi|659083337|ref|XP_008442300.1|5.8e-1756.96PREDICTED: uncharacterized protein LOC103486213 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023113T1MELO3C023113T1mRNA