MELO3C023108 (gene) Melon (DHL92) v3.5.1

NameMELO3C023108
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr8 : 14782630 .. 14782956 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGAAGGAGTTTCTAAGTTTAAAACAAGGCGATATGACCATTACTGAATATGAAAGAAAATTCACAAAGCTCGCAAAGTATGCGATGTCCTATGTAGTAGATGAAGAAGAAAAGTGCAAGCATTTCGACGAAGGTTTAAGAACGACCATTCTAGTGCCAATGACGGCAAGCACAAATTGGTCAACCTTCTCTAAGTTGGTTGAAGAAAAGAAGAGTTCTAAAGAGAAGAGATTTAGTAAGGAACCTATGCGAATGGGAGTAGCTTCTCACTCCGTTCATCAAGTATCTCAAGGAGGTCCTACACGGGATAAAGGAAAGTAG

mRNA sequence

ATGAAGAGGAAGGAGTTTCTAAGTTTAAAACAAGGCGATATGACCATTACTGAATATGAAAGAAAATTCACAAAGCTCGCAAAGTATGCGATGTCCTATGTAGTAGATGAAGAAGAAAAGTGCAAGCATTTCGACGAAGGTTTAAGAACGACCATTCTAGTGCCAATGACGGCAAGCACAAATTGGTCAACCTTCTCTAAGTTGGTTGAAGAAAAGAAGAGTTCTAAAGAGAAGAGATTTAGTAAGGAACCTATGCGAATGGGAGTAGCTTCTCACTCCGTTCATCAAGTATCTCAAGGAGGTCCTACACGGGATAAAGGAAAGTAG

Coding sequence (CDS)

ATGAAGAGGAAGGAGTTTCTAAGTTTAAAACAAGGCGATATGACCATTACTGAATATGAAAGAAAATTCACAAAGCTCGCAAAGTATGCGATGTCCTATGTAGTAGATGAAGAAGAAAAGTGCAAGCATTTCGACGAAGGTTTAAGAACGACCATTCTAGTGCCAATGACGGCAAGCACAAATTGGTCAACCTTCTCTAAGTTGGTTGAAGAAAAGAAGAGTTCTAAAGAGAAGAGATTTAGTAAGGAACCTATGCGAATGGGAGTAGCTTCTCACTCCGTTCATCAAGTATCTCAAGGAGGTCCTACACGGGATAAAGGAAAGTAG

Protein sequence

MKRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTNWSTFSKLVEEKKSSKEKRFSKEPMRMGVASHSVHQVSQGGPTRDKGK*
BLAST of MELO3C023108 vs. TrEMBL
Match: M5XSR3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016096mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTAST- 61
           K+ EFL LKQG M++ EYE KF +++++A   V  EE++C+ FDEGL   I   +TA+T 
Sbjct: 59  KKSEFLYLKQGSMSVVEYEHKFNEMSRFAPELVATEEDRCRRFDEGLWCEIQAVVTANTY 118

Query: 62  -NWSTFSKLVE---EKKSSKEKRFSKEPMRMGVASHSVHQVSQGGPTRDKG 108
            N    ++ +E    K S    R  ++  R+G  S         GP++ +G
Sbjct: 119 PNMRALAQAIERVSRKLSGSAGRRRRDTPRIGGPSQ--------GPSKKRG 161

BLAST of MELO3C023108 vs. TrEMBL
Match: M5X4P9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-08
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 1

Query: 1   MKRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTAST 60
           MK +EFL L+QG MT+ EYE+KF +L+KY    V DE +KC+ F  GL+T+I   +    
Sbjct: 179 MKMEEFLQLEQGIMTVAEYEKKFNELSKYCAPLVADERKKCQLFTRGLKTSI-HDIVVGQ 238

Query: 61  NWSTFSKLVEEKKSSKEKRFSKEPMRMGVASHSVHQVSQGGPTRDKGK 109
             + F  LV     S     S + +  G +     Q   GGP++   K
Sbjct: 239 RLANFGDLV----MSASLIESSQMIVRGRSDFRKRQYDMGGPSQGSSK 281

BLAST of MELO3C023108 vs. TrEMBL
Match: A0A0B0NVA1_GOSAR (E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTN 61
           KRKEFL LKQG+ T++EYER+F +L++YA  +V  E E  K F+EG+   I + +     
Sbjct: 84  KRKEFLELKQGNKTVSEYEREFVRLSQYATEWVQSEAEIWKRFEEGINEEIKL-LIGILK 143

Query: 62  WSTFSKLVEEKKSSKEKRFSKE 84
              F+ LV+  K ++E +  K+
Sbjct: 144 IQEFTALVDRAKKAEELKNEKK 164

BLAST of MELO3C023108 vs. TrEMBL
Match: M5Y0F6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025864mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 40/113 (35.40%), Postives = 55/113 (48.67%), Query Frame = 1

Query: 1   MKRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTI--LVPMTA 60
           MK +EFL +KQG MT+ EYE KF +L+KY    V DE +KC+ F +GLR  I  +V +  
Sbjct: 20  MKMEEFLQVKQGSMTLLEYENKFIELSKYCAPLVADERKKCQLFTKGLRPAICDIVVVQR 79

Query: 61  STNWSTF---SKLVEEKKSSKEKRFSKEPMRMGVASHSVHQVSQGGPTRDKGK 109
             N+      + L+E          S + M  G       Q   GGP +   K
Sbjct: 80  LVNYGDLVMSASLIE----------SSQMMVRGYGDSRRRQFDSGGPNQGSSK 122

BLAST of MELO3C023108 vs. TrEMBL
Match: A5BSX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021659 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTI---LVPMTA 61
           KR EF+ L Q +MT+TEY  KFT+L++YA++ VVDE+ + + F EGLR  I   + P   
Sbjct: 129 KRAEFIHLVQRNMTLTEYAIKFTQLSEYALNVVVDEQMRAEQFQEGLRLNIKAQVAPFML 188

Query: 62  STNWSTFSKLVEEKKSSKEKRFSKEPMRMG 89
            T     ++ +  ++  +E R   +  R G
Sbjct: 189 RTYSEVVARALVREREMEESRLRSKNSRFG 218

BLAST of MELO3C023108 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTN 61
           KRK+F+SL QGDMT+ EYE+ FT+LAKY + +V+DE +KCK F EGLR  I  P+TAS N
Sbjct: 84  KRKKFMSLLQGDMTVIEYEKIFTELAKYTLDFVIDEVDKCKQFGEGLRIEIRAPITASIN 143

Query: 62  WSTFSKLVE 71
           WS FSKLV+
Sbjct: 144 WSDFSKLVD 152

BLAST of MELO3C023108 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-15
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTN 61
           KR EF  L  G MTI EYE+K+ KL+KYA S + DE ++CK F++GLR  I  P+TAS+ 
Sbjct: 163 KRSEFFRLVLGSMTIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTPVTASSE 222

Query: 62  WSTFSKLVEE----KKSSKEKRFSKEPMRMGVASHSVHQVSQGGPTRDK 107
           W  FSKLVE     +KS  E++  KE       S +V      G +RDK
Sbjct: 223 WKEFSKLVETAVRVEKSLAERKNEKE------VSRNVSTAITQGVSRDK 265

BLAST of MELO3C023108 vs. NCBI nr
Match: gi|659130058|ref|XP_008464978.1| (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTN 61
           KR EFL LKQG +++ EYERK+T+L++YA   V  E ++C+ F+ GLR  I  PMTA   
Sbjct: 44  KRDEFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAK 103

Query: 62  WSTFSKLVE 71
           W  FS+LVE
Sbjct: 104 WMNFSQLVE 112

BLAST of MELO3C023108 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTN 61
           KR+EFL L QGD T+ +Y +KF +LA+YA++++++EE+KC HF++GLRT+I   +T    
Sbjct: 78  KRREFLRLVQGDETVAQYGKKFMELARYAITFIMNEEDKCMHFEDGLRTSIRALVTTCAG 137

Query: 62  WSTFSKLVE 71
              FSKLVE
Sbjct: 138 SLDFSKLVE 146

BLAST of MELO3C023108 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1

Query: 2   KRKEFLSLKQGDMTITEYERKFTKLAKYAMSYVVDEEEKCKHFDEGLRTTILVPMTASTN 61
           KR EFL LKQG +++ EYERK+T+L++YA   +  E ++C  F+ GLR  I  P+TA   
Sbjct: 59  KRDEFLELKQGSLSMAEYERKYTELSRYAGMIMASESDRCHRFERGLRFEIRTPVTAIAK 118

Query: 62  WSTFSKLVE 71
           W+ FS+LVE
Sbjct: 119 WTNFSQLVE 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M5XSR3_PRUPE2.1e-0835.14Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016096mg PE=4 SV=1[more]
M5X4P9_PRUPE8.0e-0836.11Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 S... [more]
A0A0B0NVA1_GOSAR1.8e-0740.24E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1[more]
M5Y0F6_PRUPE1.8e-0735.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025864mg PE=4 SV=1[more]
A5BSX0_VITVI3.0e-0736.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021659 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659111571|ref|XP_008455797.1|2.7e-1763.77PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|5.7e-1545.87PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659130058|ref|XP_008464978.1|1.2e-1252.17PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|7.7e-1250.72PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|659118041|ref|XP_008458920.1|2.2e-1149.28PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023108T1MELO3C023108T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 3..49
score: 2.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C023108ClCG04G003440Watermelon (Charleston Gray)mewcgB534
The following gene(s) are paralogous to this gene:

None