MELO3C023092 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023092
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Nudix protein NDX1
Location	chr5 : 7495248 .. 7495529 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAAGCAAACCGACATTGTTGACTCTTCAAGAGTCTAATGAGAATGCCAAAGAAACTGAACAAGCTGGAAGTCTAGAGGAAGAGAAGGTTGGAAATGTTCACAGTAAAGAGAAGATTAGAAGAAAACAAAAACATATCGTAATGAAGGAAAAGAAGATCTTAGTAATTGAGAGAGCTCTCTTGGATGAACCCGAAATGCAGAAAAATTCAGCTTCAATCCCATTTTGGGCTGATGAATTAATCCAGCTTCAAAGATTGCAGATCTTAAAAACATAA

mRNA sequence

ATGGCATTAAGCAAACCGACATTGTTGACTCTTCAAGAGTCTAATGAGAATGCCAAAGAAACTGAACAAGCTGGAAGTCTAGAGGAAGAGAAGGTTGGAAATGTTCACAGTAAAGAGAAGATTAGAAGAAAACAAAAACATATCGTAATGAAGGAAAAGAAGATCTTAGTAATTGAGAGAGCTCTCTTGGATGAACCCGAAATGCAGAAAAATTCAGCTTCAATCCCATTTTGGGCTGATGAATTAATCCAGCTTCAAAGATTGCAGATCTTAAAAACATAA

Coding sequence (CDS)

ATGGCATTAAGCAAACCGACATTGTTGACTCTTCAAGAGTCTAATGAGAATGCCAAAGAAACTGAACAAGCTGGAAGTCTAGAGGAAGAGAAGGTTGGAAATGTTCACAGTAAAGAGAAGATTAGAAGAAAACAAAAACATATCGTAATGAAGGAAAAGAAGATCTTAGTAATTGAGAGAGCTCTCTTGGATGAACCCGAAATGCAGAAAAATTCAGCTTCAATCCCATTTTGGGCTGATGAATTAATCCAGCTTCAAAGATTGCAGATCTTAAAAACATAA

Protein sequence

MALSKPTLLTLQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQKNSASIPFWADELIQLQRLQILKT*

Homology

[Close]

BLAST of MELO3C023092 vs. TrEMBL
Match: A0A0A0LVA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G502860 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-23
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 3   LSKPTLLTLQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERAL 62
           + +  ++   +SNENAKETEQAGSLEEEKV NVHS+EK RRK+K  VM EK+I VIERAL
Sbjct: 662 IKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSEEKHRRKRKRTVMNEKQISVIERAL 721

Query: 63  LDEPEMQKNSASIPFWADELIQ 85
           LDEPEMQ+N ASI FWADELI+
Sbjct: 722 LDEPEMQRNPASIQFWADELIR 743

[Close]

BLAST of MELO3C023092 vs. TrEMBL
Match: A0A061F500_THECC (Sequence-specific DNA binding,sequence-specific DNA binding transcription factors, putative isoform 3 OS=Theobroma cacao GN=TCM_030609 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 16  ENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQKNSASI 75
           E  +++  AG  E+EKV  V ++EK RRK+K  +M ++++ +IERALLDEPEMQ+N+ASI
Sbjct: 619 ERLRDSTPAGVREDEKVETVQTEEKQRRKRKRTIMNDEQVTIIERALLDEPEMQRNTASI 678

Query: 76  PFWADEL 83
             WAD+L
Sbjct: 679 QSWADKL 685

[Close]

BLAST of MELO3C023092 vs. TrEMBL
Match: A0A061F5L6_THECC (NDX1 homeobox protein, putative isoform 2 OS=Theobroma cacao GN=TCM_030609 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 16  ENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQKNSASI 75
           E  +++  AG  E+EKV  V ++EK RRK+K  +M ++++ +IERALLDEPEMQ+N+ASI
Sbjct: 671 ERLRDSTPAGVREDEKVETVQTEEKQRRKRKRTIMNDEQVTIIERALLDEPEMQRNTASI 730

Query: 76  PFWADEL 83
             WAD+L
Sbjct: 731 QSWADKL 737

[Close]

BLAST of MELO3C023092 vs. TrEMBL
Match: A0A061F4L8_THECC (Sequence-specific DNA binding,sequence-specific DNA binding transcription factors, putative isoform 1 OS=Theobroma cacao GN=TCM_030609 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 16  ENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQKNSASI 75
           E  +++  AG  E+EKV  V ++EK RRK+K  +M ++++ +IERALLDEPEMQ+N+ASI
Sbjct: 780 ERLRDSTPAGVREDEKVETVQTEEKQRRKRKRTIMNDEQVTIIERALLDEPEMQRNTASI 839

Query: 76  PFWADEL 83
             WAD+L
Sbjct: 840 QSWADKL 846

[Close]

BLAST of MELO3C023092 vs. TrEMBL
Match: V4U5H6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018730mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.4e-10
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 15  NENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQKNSAS 74
           NE  KE+   G  EEEKV  V S+EK +RK+K  +M + ++ +IERALLDEP+MQ+N++S
Sbjct: 695 NEPIKESVFGGVQEEEKVETVQSEEKQQRKRKRTIMNDNQMALIERALLDEPDMQRNTSS 754

Query: 75  IPFWADEL 83
           I  WA  L
Sbjct: 755 IRLWASRL 762

[Close]

BLAST of MELO3C023092 vs. TAIR10
Match: AT4G03090.1 (AT4G03090.1 sequence-specific DNA binding;sequence-specific DNA binding transcription factors)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 25/74 (33.78%), Postives = 42/74 (56.76%), Query Frame = 1


Query: 11  LQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQK 70
           +Q  ++  K +      E+EK       EK ++K+K  +M   ++ +IE+AL +EP++Q+
Sbjct: 666 VQNMSKRFKGSASGEVKEDEKSETFLVFEKQKKKRKRSIMNADQMGMIEKALAEEPDLQR 725

Query: 71  NSASIPFWADELIQ 85
           NSAS   WAD++ Q
Sbjct: 726 NSASRQLWADKISQ 739

[Close]

BLAST of MELO3C023092 vs. NCBI nr
Match: gi|659115328|ref|XP_008457501.1| (PREDICTED: uncharacterized protein LOC103497176 isoform X2 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 3   LSKPTLLTLQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERAL 62
           + +  ++   +SNENAKETEQAGSLEEEK+ NVHS+EKIRRK+K  VM EK+I VIERAL
Sbjct: 662 IKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSEEKIRRKRKRTVMNEKQISVIERAL 721

Query: 63  LDEPEMQKNSASIPFWADELIQ 85
           LDEPEMQ+N ASI FWADELI+
Sbjct: 722 LDEPEMQRNPASIQFWADELIR 743

[Close]

BLAST of MELO3C023092 vs. NCBI nr
Match: gi|659115326|ref|XP_008457500.1| (PREDICTED: uncharacterized protein LOC103497176 isoform X1 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 3   LSKPTLLTLQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERAL 62
           + +  ++   +SNENAKETEQAGSLEEEK+ NVHS+EKIRRK+K  VM EK+I VIERAL
Sbjct: 669 IKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSEEKIRRKRKRTVMNEKQISVIERAL 728

Query: 63  LDEPEMQKNSASIPFWADELIQ 85
           LDEPEMQ+N ASI FWADELI+
Sbjct: 729 LDEPEMQRNPASIQFWADELIR 750

[Close]

BLAST of MELO3C023092 vs. NCBI nr
Match: gi|778661402|ref|XP_011658033.1| (PREDICTED: uncharacterized protein LOC101207456 isoform X1 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.3e-23
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 3   LSKPTLLTLQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERAL 62
           + +  ++   +SNENAKETEQAGSLEEEKV NVHS+EK RRK+K  VM EK+I VIERAL
Sbjct: 669 IKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSEEKHRRKRKRTVMNEKQISVIERAL 728

Query: 63  LDEPEMQKNSASIPFWADELIQ 85
           LDEPEMQ+N ASI FWADELI+
Sbjct: 729 LDEPEMQRNPASIQFWADELIR 750

[Close]

BLAST of MELO3C023092 vs. NCBI nr
Match: gi|778661405|ref|XP_011658036.1| (PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.3e-23
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 3   LSKPTLLTLQESNENAKETEQAGSLEEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERAL 62
           + +  ++   +SNENAKETEQAGSLEEEKV NVHS+EK RRK+K  VM EK+I VIERAL
Sbjct: 662 IKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSEEKHRRKRKRTVMNEKQISVIERAL 721

Query: 63  LDEPEMQKNSASIPFWADELIQ 85
           LDEPEMQ+N ASI FWADELI+
Sbjct: 722 LDEPEMQRNPASIQFWADELIR 743

[Close]

BLAST of MELO3C023092 vs. NCBI nr
Match: gi|729448230|ref|XP_010522671.1| (PREDICTED: uncharacterized protein LOC104801203 [Tarenaya hassleriana])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 37/71 (52.11%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 13  ESNENAKETEQAGSL-EEEKVGNVHSKEKIRRKQKHIVMKEKKILVIERALLDEPEMQKN 72
           ++N+ +KE+E  G + E+EK+  V + EK RRK+K  +M ++++L+IERALLDEP+MQ+N
Sbjct: 672 KTNKGSKESESGGGIKEDEKIEAVQTIEKQRRKRKRSIMNDEQMLMIERALLDEPDMQRN 731

Query: 73  SASIPFWADEL 83
           SASI  WAD+L
Sbjct: 732 SASIQTWADKL 742

The following BLAST results are available for this feature:

BLAST of MELO3C023092 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVA2_CUCSA	5.8e-23	70.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G502860 PE=4 SV=1	[more]
A0A061F500_THECC	3.0e-11	52.24	Sequence-specific DNA binding,sequence-specific DNA binding transcription factor...	[more]
A0A061F5L6_THECC	3.0e-11	52.24	NDX1 homeobox protein, putative isoform 2 OS=Theobroma cacao GN=TCM_030609 PE=4 ...	[more]
A0A061F4L8_THECC	3.0e-11	52.24	Sequence-specific DNA binding,sequence-specific DNA binding transcription factor...	[more]
V4U5H6_9ROSI	7.4e-10	51.47	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018730mg PE=4 SV=1	[more]

BLAST of MELO3C023092 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03090.1	2.0e-06	33.78	sequence-specific DNA binding;sequence-specific DNA binding transcri...	[more]

BLAST of MELO3C023092 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115328\|ref\|XP_008457501.1\|	1.7e-23	70.73	PREDICTED: uncharacterized protein LOC103497176 isoform X2 [Cucumis melo]	[more]
gi\|659115326\|ref\|XP_008457500.1\|	1.7e-23	70.73	PREDICTED: uncharacterized protein LOC103497176 isoform X1 [Cucumis melo]	[more]
gi\|778661402\|ref\|XP_011658033.1\|	8.3e-23	70.73	PREDICTED: uncharacterized protein LOC101207456 isoform X1 [Cucumis sativus]	[more]
gi\|778661405\|ref\|XP_011658036.1\|	8.3e-23	70.73	PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus]	[more]
gi\|729448230\|ref\|XP_010522671.1\|	2.5e-11	52.11	PREDICTED: uncharacterized protein LOC104801203 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023092T1	MELO3C023092T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 85..93 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023092	Cucumber (Chinese Long) v3	cucmeB143
MELO3C023092	Cucumber (Chinese Long) v3	cucmeB230
MELO3C023092	Cucumber (Chinese Long) v3	cucmeB232
MELO3C023092	Watermelon (97103) v2	mewmbB384
MELO3C023092	Watermelon (97103) v2	mewmbB388
MELO3C023092	Watermelon (97103) v2	mewmbB405
MELO3C023092	Wax gourd	mewgoB446
MELO3C023092	Wax gourd	mewgoB450
MELO3C023092	Wax gourd	mewgoB480
MELO3C023092	Melon (DHL92) v3.5.1	memeB147
MELO3C023092	Cucumber (Gy14) v1	cgymeB352
MELO3C023092	Cucumber (Gy14) v1	cgymeB434
MELO3C023092	Cucurbita maxima (Rimu)	cmameB234
MELO3C023092	Cucurbita maxima (Rimu)	cmameB338
MELO3C023092	Cucurbita maxima (Rimu)	cmameB760
MELO3C023092	Cucurbita maxima (Rimu)	cmameB845
MELO3C023092	Cucurbita moschata (Rifu)	cmomeB221
MELO3C023092	Cucurbita moschata (Rifu)	cmomeB331
MELO3C023092	Cucurbita moschata (Rifu)	cmomeB752
MELO3C023092	Cucurbita moschata (Rifu)	cmomeB828
MELO3C023092	Wild cucumber (PI 183967)	cpimeB141
MELO3C023092	Wild cucumber (PI 183967)	cpimeB226
MELO3C023092	Cucumber (Chinese Long) v2	cumeB131
MELO3C023092	Cucumber (Chinese Long) v2	cumeB231
MELO3C023092	Cucumber (Chinese Long) v2	cumeB490
MELO3C023092	Watermelon (Charleston Gray)	mewcgB385
MELO3C023092	Watermelon (Charleston Gray)	mewcgB388
MELO3C023092	Watermelon (97103) v1	mewmB411
MELO3C023092	Watermelon (97103) v1	mewmB413
MELO3C023092	Watermelon (97103) v1	mewmB430
MELO3C023092	Cucurbita pepo (Zucchini)	cpemeB137
MELO3C023092	Cucurbita pepo (Zucchini)	cpemeB310
MELO3C023092	Cucurbita pepo (Zucchini)	cpemeB578
MELO3C023092	Cucurbita pepo (Zucchini)	cpemeB804
MELO3C023092	Bottle gourd (USVL1VR-Ls)	lsimeB025
MELO3C023092	Bottle gourd (USVL1VR-Ls)	lsimeB360
MELO3C023092	Cucumber (Gy14) v2	cgybmeB122
MELO3C023092	Cucumber (Gy14) v2	cgybmeB195
MELO3C023092	Silver-seed gourd	carmeB0233
MELO3C023092	Silver-seed gourd	carmeB0238
MELO3C023092	Silver-seed gourd	carmeB0939
MELO3C023092	Silver-seed gourd	carmeB1046