MELO3C023091 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023091
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr5 : 7423720 .. 7423878 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTAGTAAATACCGCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGAGAGCAATTTTGATGTCCCCTGATGGAAAGTGGTACCTGTCGCCACGTACCCGAGACGATGCGGAGCAGCCGACGTCCTAA

mRNA sequence

ATGGCATTAGTAAATACCGCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGAGAGCAATTTTGATGTCCCCTGATGGAAAGTGGTACCTGTCGCCACGTACCCGAGACGATGCGGAGCAGCCGACGTCCTAA

Coding sequence (CDS)

ATGGCATTAGTAAATACCGCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGAGAGCAATTTTGATGTCCCCTGATGGAAAGTGGTACCTGTCGCCACGTACCCGAGACGATGCGGAGCAGCCGACGTCCTAA

Protein sequence

MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS*
Homology
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BLAST of MELO3C023091 vs. NCBI nr
Match: gi|659092961|ref|XP_008447313.1| (PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-06
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 1   MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY 39
           M +VNT+S+TWTMMFD ATN++GHG+   LMSPD K Y
Sbjct: 130 MTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRY 167

The following BLAST results are available for this feature:
BLAST of MELO3C023091 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092961|ref|XP_008447313.1|5.2e-0665.79PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023091T1MELO3C023091T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023091Cucumber (Chinese Long) v3cucmeB143
MELO3C023091Cucumber (Chinese Long) v3cucmeB230
MELO3C023091Cucumber (Chinese Long) v3cucmeB232
MELO3C023091Watermelon (97103) v2mewmbB384
MELO3C023091Watermelon (97103) v2mewmbB388
MELO3C023091Watermelon (97103) v2mewmbB405
MELO3C023091Wax gourdmewgoB446
MELO3C023091Wax gourdmewgoB450
MELO3C023091Wax gourdmewgoB480
MELO3C023091Melon (DHL92) v3.5.1memeB147
MELO3C023091Cucumber (Gy14) v1cgymeB352
MELO3C023091Cucumber (Gy14) v1cgymeB434
MELO3C023091Cucurbita maxima (Rimu)cmameB234
MELO3C023091Cucurbita maxima (Rimu)cmameB338
MELO3C023091Cucurbita maxima (Rimu)cmameB760
MELO3C023091Cucurbita maxima (Rimu)cmameB845
MELO3C023091Cucurbita moschata (Rifu)cmomeB221
MELO3C023091Cucurbita moschata (Rifu)cmomeB331
MELO3C023091Cucurbita moschata (Rifu)cmomeB752
MELO3C023091Cucurbita moschata (Rifu)cmomeB828
MELO3C023091Wild cucumber (PI 183967)cpimeB141
MELO3C023091Wild cucumber (PI 183967)cpimeB226
MELO3C023091Cucumber (Chinese Long) v2cumeB131
MELO3C023091Cucumber (Chinese Long) v2cumeB231
MELO3C023091Cucumber (Chinese Long) v2cumeB490
MELO3C023091Watermelon (Charleston Gray)mewcgB385
MELO3C023091Watermelon (Charleston Gray)mewcgB388
MELO3C023091Watermelon (97103) v1mewmB411
MELO3C023091Watermelon (97103) v1mewmB413
MELO3C023091Watermelon (97103) v1mewmB430
MELO3C023091Cucurbita pepo (Zucchini)cpemeB137
MELO3C023091Cucurbita pepo (Zucchini)cpemeB310
MELO3C023091Cucurbita pepo (Zucchini)cpemeB578
MELO3C023091Cucurbita pepo (Zucchini)cpemeB804
MELO3C023091Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C023091Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C023091Cucumber (Gy14) v2cgybmeB122
MELO3C023091Cucumber (Gy14) v2cgybmeB195
MELO3C023091Silver-seed gourdcarmeB0233
MELO3C023091Silver-seed gourdcarmeB0238
MELO3C023091Silver-seed gourdcarmeB0939
MELO3C023091Silver-seed gourdcarmeB1046