MELO3C023080 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023080
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionClathrin, heavy chain
Locationchr5 : 7182714 .. 7183369 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTGATTCATCTTCCACGGCTCCATCTCCTCTCAAGAATGCGTTATATGCTAAAGGTAAGAGTTACAAAAGTATTTCGCTGTGCCGTTCGTTCAAGAAAGTTTGTCGTTCTGATGTAACTAATGATTCCAATCTCTATATTCCCTTGGCTAGTCTTATTCAGAGTGTACATGCAGGTACTTCTTCTGGCCATTTGCTTCTTCTTCCATTCCAAGGTCTAGGGTTTTCATTGCAACATTAATTTTAGATCCAGATTCCGCTTCCTCGGATGGTGATGACTCAATCGTTCTCTCGAAGCTACTTCAGCTATTCAAGATAGGGGATCGATTTAGTCCTTCGTCTACTTCGGCCCCAGCTGCACAGGGTATATGTTCATCACCTCGTGACATTTCTCCTCCTCAAAATGTTCCTCCTCAAACTGCAAATCGTGGTAAGTCTTCTATTTCTTAAGCCTCATCTCCTGTTACCCCATCGTCTCCTCAATTTCCAAAAGAGTTATATGAAACTGATGAAGATGAGTCGGGTGAAGATACTGATGAGGACTATGTTCCAGAATCTGAGAAAACCCATGTTCCAAAAGAATCCATTGTCCTAGTTGATGACCCTACTCTGTCTCGTGACAACCGAACGCCTAAGCCTCAAATCAACTGA

mRNA sequence

ATGGCTATTGATTCATCTTCCACGGCTCCATCTCCTCTCAAGAATGCGTTATATGCTAAAGATCCAGATTCCGCTTCCTCGGATGGTGATGACTCAATCGTTCTCTCGAAGCTACTTCAGCTATTCAAGATAGGGGATCGATTTAGTCCTTCGTCTACTTCGGCCCCAGCTGCACAGGGTATATGTTCATCACCTCGTGACATTTCTCCTCCTCAAAATGTTCCTCCTCAAACTGCAAATCGTGATGAGTCGGGTGAAGATACTGATGAGGACTATGTTCCAGAATCTGAGAAAACCCATGTTCCAAAAGAATCCATTGTCCTAGTTGATGACCCTACTCTGTCTCGTGACAACCGAACGCCTAAGCCTCAAATCAACTGA

Coding sequence (CDS)

ATGGCTATTGATTCATCTTCCACGGCTCCATCTCCTCTCAAGAATGCGTTATATGCTAAAGATCCAGATTCCGCTTCCTCGGATGGTGATGACTCAATCGTTCTCTCGAAGCTACTTCAGCTATTCAAGATAGGGGATCGATTTAGTCCTTCGTCTACTTCGGCCCCAGCTGCACAGGGTATATGTTCATCACCTCGTGACATTTCTCCTCCTCAAAATGTTCCTCCTCAAACTGCAAATCGTGATGAGTCGGGTGAAGATACTGATGAGGACTATGTTCCAGAATCTGAGAAAACCCATGTTCCAAAAGAATCCATTGTCCTAGTTGATGACCCTACTCTGTCTCGTGACAACCGAACGCCTAAGCCTCAAATCAACTGA

Protein sequence

MAIDSSSTAPSPLKNALYAKDPDSASSDGDDSIVLSKLLQLFKIGDRFSPSSTSAPAAQGICSSPRDISPPQNVPPQTANRDESGEDTDEDYVPESEKTHVPKESIVLVDDPTLSRDNRTPKPQIN*
Homology
[Close]
BLAST of MELO3C023080 vs. NCBI nr
Match: gi|659109755|ref|XP_008454860.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 55/126 (43.65%), Postives = 65/126 (51.59%), Query Frame = 1 

Query: 5   SSSTAPSPLKNALYAKDPDSASSDGDDSIVLSKLLQLFKIGDRFSPSSTSAPAAQGICSS 64
           SSS + S +       D DSASS+ D+SIVLSKLL+  K  DR  P ST AP AQG  S 
Sbjct: 111 SSSISRSRVSIETVILDLDSASSNSDESIVLSKLLRRLKTMDRSGPLSTLAPTAQGTRSP 170

Query: 65  PRDIS-PPQNVPPQTANR----------------------------DESGEDTDEDYVPE 102
           P D+S PP++VPP+TA R                            D+  EDTDEDYV  
Sbjct: 171 PCDVSPPPRDVPPRTAYRGKSHVPQASSYVTPSSSKSPEESYGNDEDQLSEDTDEDYVLG 230

[Close]
BLAST of MELO3C023080 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1 

Query: 3   IDSSSTAPSPLKNALYAKDPDSASSDGDDSIVLSKLLQLFKIGDRFSPSSTSAPAAQGIC 62
           + +SS+ P P + ++     DS SSD  D++VLS LL       R S ++ S+P A    
Sbjct: 241 LSTSSSVPEP-RVSIETVVLDSDSSDSKDNVVLSTLLH------RKSSAAPSSPHAFPQA 300

Query: 63  SSPRDISPPQNVPPQTANRDESGEDTDEDYVPESEKTHVPKESIVLVDDPTLSRDNRTPK 122
           S P              N D++ ++TDEDYVP +E+T V ++S    +DP+ S D RT +
Sbjct: 301 SLP-------------TNEDDASDETDEDYVPGTEETTVLEDSSTSTEDPSASHDARTLE 342

Query: 123 PQ 125
           P+
Sbjct: 361 PR 342

The following BLAST results are available for this feature:
BLAST of MELO3C023080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109755|ref|XP_008454860.1|1.5e-1143.65PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659082052|ref|XP_008441642.1|1.9e-0634.43PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023080T1MELO3C023080T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023080Cucumber (Gy14) v1cgymeB352
MELO3C023080Cucumber (Gy14) v1cgymeB434
MELO3C023080Cucurbita maxima (Rimu)cmameB234
MELO3C023080Cucurbita maxima (Rimu)cmameB338
MELO3C023080Cucurbita maxima (Rimu)cmameB760
MELO3C023080Cucurbita maxima (Rimu)cmameB845
MELO3C023080Cucurbita moschata (Rifu)cmomeB221
MELO3C023080Cucurbita moschata (Rifu)cmomeB331
MELO3C023080Cucurbita moschata (Rifu)cmomeB752
MELO3C023080Cucurbita moschata (Rifu)cmomeB828
MELO3C023080Wild cucumber (PI 183967)cpimeB141
MELO3C023080Wild cucumber (PI 183967)cpimeB226
MELO3C023080Cucumber (Chinese Long) v2cumeB131
MELO3C023080Cucumber (Chinese Long) v2cumeB231
MELO3C023080Watermelon (Charleston Gray)mewcgB385
MELO3C023080Watermelon (Charleston Gray)mewcgB388
MELO3C023080Watermelon (97103) v1mewmB411
MELO3C023080Watermelon (97103) v1mewmB413
MELO3C023080Watermelon (97103) v1mewmB430
MELO3C023080Cucurbita pepo (Zucchini)cpemeB137
MELO3C023080Cucurbita pepo (Zucchini)cpemeB310
MELO3C023080Cucurbita pepo (Zucchini)cpemeB578
MELO3C023080Cucurbita pepo (Zucchini)cpemeB804
MELO3C023080Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C023080Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C023080Cucumber (Gy14) v2cgybmeB122
MELO3C023080Cucumber (Gy14) v2cgybmeB195
MELO3C023080Silver-seed gourdcarmeB0233
MELO3C023080Silver-seed gourdcarmeB0238
MELO3C023080Silver-seed gourdcarmeB0939
MELO3C023080Silver-seed gourdcarmeB1046
MELO3C023080Cucumber (Chinese Long) v3cucmeB143
MELO3C023080Cucumber (Chinese Long) v3cucmeB230
MELO3C023080Cucumber (Chinese Long) v3cucmeB232
MELO3C023080Watermelon (97103) v2mewmbB384
MELO3C023080Watermelon (97103) v2mewmbB388
MELO3C023080Watermelon (97103) v2mewmbB405
MELO3C023080Wax gourdmewgoB446
MELO3C023080Wax gourdmewgoB450
MELO3C023080Melon (DHL92) v3.5.1memeB147