MELO3C023060.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023060.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionstress response protein NST1-like
Locationchr05 : 6782050 .. 6782229 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACCGACACAAAAAAACCTCTAAAATCTCTCATACCTCTAAGTTCACCTCGAAAAAGAATGCTTCATCCATTCAACCACAAGAGAAATGCCCTGAAGCATCCATGAAACTTGAATCTTCTTACGAGAAATCCAGACCTGAGGGTTCTGAGAAAAAGATCTTCCTCAAGCCTTGA

mRNA sequence

ATGGCCGACCGACACAAAAAAACCTCTAAAATCTCTCATACCTCTAAGTTCACCTCGAAAAAGAATGCTTCATCCATTCAACCACAAGAGAAATGCCCTGAAGCATCCATGAAACTTGAATCTTCTTACGAGAAATCCAGACCTGAGGGTTCTGAGAAAAAGATCTTCCTCAAGCCTTGA

Coding sequence (CDS)

ATGGCCGACCGACACAAAAAAACCTCTAAAATCTCTCATACCTCTAAGTTCACCTCGAAAAAGAATGCTTCATCCATTCAACCACAAGAGAAATGCCCTGAAGCATCCATGAAACTTGAATCTTCTTACGAGAAATCCAGACCTGAGGGTTCTGAGAAAAAGATCTTCCTCAAGCCTTGA

Protein sequence

MADRHKKTSKISHTSKFTSKKNASSIQPQEKCPEASMKLESSYEKSRPEGSEKKIFLKP
Homology
[Close]
BLAST of MELO3C023060.2 vs. NCBI nr
Match: XP_008464070.1 (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-06
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 1  MADRHKKTSKISHTSKFTSKKNASSIQPQEKCPEASMKLESSYEKSRPEGSEKKIFLKP 60
          MAD+HKK  + SHTSK   +K+AS IQPQ K  + S K ESS +KSR EGS KKI LKP
Sbjct: 1  MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKP 59

[Close]
BLAST of MELO3C023060.2 vs. TrEMBL
Match: tr|A0A1S3CKM2|A0A1S3CKM2_CUCME (stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103502045 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 1  MADRHKKTSKISHTSKFTSKKNASSIQPQEKCPEASMKLESSYEKSRPEGSEKKIFLKP 60
          MAD+HKK  + SHTSK   +K+AS IQPQ K  + S K ESS +KSR EGS KKI LKP
Sbjct: 1  MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKP 59

The following BLAST results are available for this feature:
BLAST of MELO3C023060.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464070.15.1e-0661.02PREDICTED: stress response protein NST1-like [Cucumis melo][more]
BLAST of MELO3C023060.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C023060.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C023060.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CKM2|A0A1S3CKM2_CUCME3.4e-0661.02stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103502045 PE=4 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023060.2.1MELO3C023060.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023060.2Cucumber (Gy14) v2cgybmedB120
MELO3C023060.2Cucumber (Gy14) v2cgybmedB195
MELO3C023060.2Cucumber (Gy14) v2cgybmedB197
MELO3C023060.2Cucumber (Gy14) v1cgymedB429
MELO3C023060.2Cucumber (Gy14) v1cgymedB620
MELO3C023060.2Cucurbita maxima (Rimu)cmamedB266
MELO3C023060.2Cucurbita maxima (Rimu)cmamedB394
MELO3C023060.2Cucurbita maxima (Rimu)cmamedB657
MELO3C023060.2Cucurbita maxima (Rimu)cmamedB860
MELO3C023060.2Cucurbita maxima (Rimu)cmamedB946
MELO3C023060.2Cucurbita moschata (Rifu)cmomedB250
MELO3C023060.2Cucurbita moschata (Rifu)cmomedB381
MELO3C023060.2Cucurbita moschata (Rifu)cmomedB644
MELO3C023060.2Cucurbita moschata (Rifu)cmomedB854
MELO3C023060.2Cucurbita moschata (Rifu)cmomedB935
MELO3C023060.2Cucurbita pepo (Zucchini)cpemedB166
MELO3C023060.2Cucurbita pepo (Zucchini)cpemedB362
MELO3C023060.2Cucurbita pepo (Zucchini)cpemedB685
MELO3C023060.2Cucurbita pepo (Zucchini)cpemedB825
MELO3C023060.2Cucurbita pepo (Zucchini)cpemedB944
MELO3C023060.2Wild cucumber (PI 183967)cpimedB134
MELO3C023060.2Wild cucumber (PI 183967)cpimedB219
MELO3C023060.2Wild cucumber (PI 183967)cpimedB221
MELO3C023060.2Cucumber (Chinese Long) v2cumedB134
MELO3C023060.2Cucumber (Chinese Long) v2cumedB218
MELO3C023060.2Cucumber (Chinese Long) v2cumedB220
MELO3C023060.2Melon (DHL92) v3.6.1medmedB134
MELO3C023060.2Melon (DHL92) v3.6.1medmedB144
MELO3C023060.2Bottle gourd (USVL1VR-Ls)lsimedB027
MELO3C023060.2Bottle gourd (USVL1VR-Ls)lsimedB375
MELO3C023060.2Bottle gourd (USVL1VR-Ls)lsimedB379
MELO3C023060.2Watermelon (Charleston Gray)medwcgB376
MELO3C023060.2Watermelon (Charleston Gray)medwcgB378
MELO3C023060.2Watermelon (Charleston Gray)medwcgB390
MELO3C023060.2Watermelon (97103) v1medwmB401
MELO3C023060.2Watermelon (97103) v1medwmB404
MELO3C023060.2Watermelon (97103) v1medwmB418
MELO3C023060.2Silver-seed gourdcarmedB0240
MELO3C023060.2Silver-seed gourdcarmedB0246
MELO3C023060.2Silver-seed gourdcarmedB0790
MELO3C023060.2Silver-seed gourdcarmedB0945
MELO3C023060.2Silver-seed gourdcarmedB1060
MELO3C023060.2Cucumber (Chinese Long) v3cucmedB136
MELO3C023060.2Cucumber (Chinese Long) v3cucmedB222
MELO3C023060.2Cucumber (Chinese Long) v3cucmedB224
MELO3C023060.2Watermelon (97103) v2medwmbB374
MELO3C023060.2Watermelon (97103) v2medwmbB378
MELO3C023060.2Watermelon (97103) v2medwmbB391
MELO3C023060.2Wax gourdmedwgoB449
MELO3C023060.2Wax gourdmedwgoB453
MELO3C023060.2Wax gourdmedwgoB481