MELO3C023026 (gene) Melon (DHL92) v3.5.1

NameMELO3C023026
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent RNA helicase
Locationchr5 : 6275394 .. 6275583 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTACAAGGGATCAGAGGTTACACGAAAAGTGACATGGATTATTTTTTATGAAGTACACTACATGTGTGATTGGGAGCGAGGTGTTGTTAGGGAAGAGAGCATTGTCATGACTCCAAAAAATGCTCGATTTGTTTTCCTCAGCAACTGTACCAAATGCAAAAGAATTTGCTACTTGGGTTGCAAAG

mRNA sequence

ATGAAGTACAAGGGATCAGAGGTTACACGAAAAGTGACATGGATTATTTTTTATGAAGTACACTACATGTGTGATTGGGAGCGAGGTGTTGTTAGGGAAGAGAGCATTGTCATGACTCCAAAAAATGCTCGATTTGTTTTCCTCAGCAACTGTACCAAATGCAAAAGAATTTGCTACTTGGGTTGCAAAG

Coding sequence (CDS)

ATGAAGTACAAGGGATCAGAGGTTACACGAAAAGTGACATGGATTATTTTTTATGAAGTACACTACATGTGTGATTGGGAGCGAGGTGTTGTTAGGGAAGAGAGCATTGTCATGACTCCAAAAAATGCTCGATTTGTTTTCCTCAGCAACTGTACCAAATGCAAAAGAATTTGCTACTTGGGTTGCAAAG

Protein sequence

MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLSNCTKCKRICYLGCK
BLAST of MELO3C023026 vs. Swiss-Prot
Match: MTR4_ARATH (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-14
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSE+ R+V WIIF EVHYM D ERGVV EESIVM PKN+RFVFLS
Sbjct: 163 MQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLS 211

BLAST of MELO3C023026 vs. Swiss-Prot
Match: MTR4_YEAST (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-11
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M Y+GSEV R+V W+IF EVHYM D ERGVV EE+I++ P   R+VFLS
Sbjct: 245 MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 293

BLAST of MELO3C023026 vs. Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-11
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M Y+GSEV R+V W+IF E+HYM D ERGVV EE+I++ P N  +VFLS
Sbjct: 235 MLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLS 283

BLAST of MELO3C023026 vs. Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-11
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M Y+GSEV R+V W+IF E+HYM D ERGVV EE+I++ P N  +VFLS
Sbjct: 233 MLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLS 281

BLAST of MELO3C023026 vs. Swiss-Prot
Match: MTR4_SCHPO (ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M Y+GSEV R+V W+IF E+HYM D ERGVV EE+I++ P  + FVFLS
Sbjct: 294 MLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLS 342

BLAST of MELO3C023026 vs. TrEMBL
Match: G7KSG0_MEDTR (Superkiller viralicidic activity-like protein OS=Medicago truncatula GN=MTR_7g080730 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM+PKNARFVFLS
Sbjct: 156 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLS 204

BLAST of MELO3C023026 vs. TrEMBL
Match: M5W7L7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000814mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-13
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM PKNARFVFLS
Sbjct: 168 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLS 216

BLAST of MELO3C023026 vs. TrEMBL
Match: D2J0B1_CUCSA (ATP-dependent RNA helicase (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-13
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM PKNARFVFLS
Sbjct: 153 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLS 201

BLAST of MELO3C023026 vs. TrEMBL
Match: A0A0A0KFR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109760 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-13
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM PKNARFVFLS
Sbjct: 167 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLS 215

BLAST of MELO3C023026 vs. TrEMBL
Match: A0A124SCE6_CYNCS (DNA/RNA helicase, DEAD/DEAH box type, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccrd_004412 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V W+IF EVHYM D ERGVV EESIVM PKNARFVFLS
Sbjct: 174 MQYKGSEVTREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLS 222

BLAST of MELO3C023026 vs. TAIR10
Match: AT1G59760.1 (AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-15
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSE+ R+V WIIF EVHYM D ERGVV EESIVM PKN+RFVFLS
Sbjct: 163 MQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLS 211

BLAST of MELO3C023026 vs. TAIR10
Match: AT2G06990.1 (AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-11
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFL----SNCTK-CK 60
           M Y+GSEV ++V W+IF E+HYM D ERGVV EESI+  P   + VFL    SN T+  +
Sbjct: 177 MLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAE 236

BLAST of MELO3C023026 vs. TAIR10
Match: AT3G46960.1 (AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 59.3 bits (142), Expect = 9.8e-10
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M Y+G+++ R + W+IF EVHY+ D ERGVV EE I+M P++  FV LS
Sbjct: 455 MLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLS 503

BLAST of MELO3C023026 vs. NCBI nr
Match: gi|1012123090|ref|XP_015962906.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Arachis duranensis])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM+PKNARFVFLS
Sbjct: 167 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLS 215

BLAST of MELO3C023026 vs. NCBI nr
Match: gi|502090155|ref|XP_004489138.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cicer arietinum])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM+PKNARFVFLS
Sbjct: 150 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLS 198

BLAST of MELO3C023026 vs. NCBI nr
Match: gi|357507885|ref|XP_003624231.1| (superkiller viralicidic activity-like protein [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM+PKNARFVFLS
Sbjct: 156 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLS 204

BLAST of MELO3C023026 vs. NCBI nr
Match: gi|1021503192|ref|XP_016194819.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Arachis ipaensis])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM+PKNARFVFLS
Sbjct: 167 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLS 215

BLAST of MELO3C023026 vs. NCBI nr
Match: gi|645217626|ref|XP_008226685.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Prunus mume])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-13
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   MKYKGSEVTRKVTWIIFYEVHYMCDWERGVVREESIVMTPKNARFVFLS 50
           M+YKGSEVTR+V WIIF EVHYM D ERGVV EESIVM PKNARFVFLS
Sbjct: 170 MQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLS 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MTR4_ARATH2.8e-1477.55DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 S... [more]
MTR4_YEAST8.4e-1163.27ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 ... [more]
SK2L2_HUMAN8.4e-1161.22Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3[more]
SK2L2_MOUSE8.4e-1161.22Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1[more]
MTR4_SCHPO1.4e-1061.22ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
Match NameE-valueIdentityDescription
G7KSG0_MEDTR1.6e-1383.67Superkiller viralicidic activity-like protein OS=Medicago truncatula GN=MTR_7g08... [more]
M5W7L7_PRUPE2.1e-1383.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000814mg PE=4 SV=1[more]
D2J0B1_CUCSA2.1e-1383.67ATP-dependent RNA helicase (Fragment) OS=Cucumis sativus PE=2 SV=1[more]
A0A0A0KFR7_CUCSA2.1e-1383.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109760 PE=4 SV=1[more]
A0A124SCE6_CYNCS2.8e-1381.63DNA/RNA helicase, DEAD/DEAH box type, N-terminal OS=Cynara cardunculus var. scol... [more]
Match NameE-valueIdentityDescription
AT1G59760.11.6e-1577.55 RNA helicase, ATP-dependent, SK12/DOB1 protein[more]
AT2G06990.11.8e-1153.85 RNA helicase, ATP-dependent, SK12/DOB1 protein[more]
AT3G46960.19.8e-1053.06 RNA helicase, ATP-dependent, SK12/DOB1 protein[more]
Match NameE-valueIdentityDescription
gi|1012123090|ref|XP_015962906.1|2.4e-1383.67PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Arachis duranensis][more]
gi|502090155|ref|XP_004489138.1|2.4e-1383.67PREDICTED: superkiller viralicidic activity 2-like 2 [Cicer arietinum][more]
gi|357507885|ref|XP_003624231.1|2.4e-1383.67superkiller viralicidic activity-like protein [Medicago truncatula][more]
gi|1021503192|ref|XP_016194819.1|2.4e-1383.67PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Arachis ipaensis][more]
gi|645217626|ref|XP_008226685.1|3.1e-1383.67PREDICTED: superkiller viralicidic activity 2-like 2 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0031125 rRNA 3'-end processing
biological_process GO:0006401 RNA catabolic process
biological_process GO:0010212 response to ionizing radiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006606 protein import into nucleus
biological_process GO:0016579 protein deubiquitination
biological_process GO:0000338 protein deneddylation
biological_process GO:0048825 cotyledon development
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0010074 maintenance of meristem identity
biological_process GO:0000741 karyogamy
biological_process GO:0016571 histone methylation
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0000724 double-strand break repair via homologous recombination
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003724 RNA helicase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023026T1MELO3C023026T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 6..49
score: 2.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..49
score: 9.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023026Wild cucumber (PI 183967)cpimeB141
MELO3C023026Wild cucumber (PI 183967)cpimeB226
MELO3C023026Cucumber (Chinese Long) v2cumeB131
MELO3C023026Cucumber (Chinese Long) v2cumeB231
MELO3C023026Watermelon (Charleston Gray)mewcgB385
MELO3C023026Watermelon (Charleston Gray)mewcgB388
MELO3C023026Watermelon (Charleston Gray)mewcgB402
MELO3C023026Watermelon (97103) v1mewmB410
MELO3C023026Watermelon (97103) v1mewmB413
MELO3C023026Watermelon (97103) v1mewmB430
MELO3C023026Cucurbita pepo (Zucchini)cpemeB137
MELO3C023026Cucurbita pepo (Zucchini)cpemeB310
MELO3C023026Cucurbita pepo (Zucchini)cpemeB578
MELO3C023026Cucurbita pepo (Zucchini)cpemeB694
MELO3C023026Cucurbita pepo (Zucchini)cpemeB804
MELO3C023026Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C023026Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C023026Bottle gourd (USVL1VR-Ls)lsimeB364
MELO3C023026Cucumber (Gy14) v2cgybmeB122
MELO3C023026Cucumber (Gy14) v2cgybmeB195
MELO3C023026Silver-seed gourdcarmeB0233
MELO3C023026Silver-seed gourdcarmeB0238
MELO3C023026Silver-seed gourdcarmeB0939
MELO3C023026Silver-seed gourdcarmeB1046
MELO3C023026Cucumber (Chinese Long) v3cucmeB143
MELO3C023026Cucumber (Chinese Long) v3cucmeB231
MELO3C023026Cucumber (Chinese Long) v3cucmeB232
MELO3C023026Watermelon (97103) v2mewmbB384
MELO3C023026Watermelon (97103) v2mewmbB388
MELO3C023026Watermelon (97103) v2mewmbB403
MELO3C023026Wax gourdmewgoB450
MELO3C023026Wax gourdmewgoB479
MELO3C023026Wax gourdmewgoB470
MELO3C023026Melon (DHL92) v3.5.1memeB138
MELO3C023026Melon (DHL92) v3.5.1memeB147
MELO3C023026Cucumber (Gy14) v1cgymeB434
MELO3C023026Cucumber (Gy14) v1cgymeB624
MELO3C023026Cucurbita maxima (Rimu)cmameB234
MELO3C023026Cucurbita maxima (Rimu)cmameB338
MELO3C023026Cucurbita maxima (Rimu)cmameB576
MELO3C023026Cucurbita maxima (Rimu)cmameB760
MELO3C023026Cucurbita maxima (Rimu)cmameB845
MELO3C023026Cucurbita moschata (Rifu)cmomeB221
MELO3C023026Cucurbita moschata (Rifu)cmomeB331
MELO3C023026Cucurbita moschata (Rifu)cmomeB752
MELO3C023026Cucurbita moschata (Rifu)cmomeB828