MELO3C023024 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023024
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCHD3-type chromatin-remodeling factor PICKLE
Locationchr5 : 6212083 .. 6212313 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACGTAATGTCATCGTTCAACCAAGCATTGATTTGAACCAGAAAGAAGATAAAGATGTTGAAGAAGTTCTTGTTGTTCGAGTGAGGAATGGTCGAAGACCCACAAGAAGAATCCACGAGTACCTAGTAAAGTGGAAACGTGCTGAAGATCTAGAAGAAACTAGTTGGGAACGTGCCAAAAATCTAGAAGCCTGGACGCAAAAGATTGAAAAGTTCAAGCTTCTTTAG

mRNA sequence

ATGCAACGTAATGTCATCGTTCAACCAAGCATTGATTTGAACCAGAAAGAAGATAAAGATGTTGAAGAAGTTCTTGTTGTTCGAGTGAGGAATGGTCGAAGACCCACAAGAAGAATCCACGAGTACCTAGTAAAGTGGAAACGTGCTGAAGATCTAGAAGAAACTAGTTGGGAACGTGCCAAAAATCTAGAAGCCTGGACGCAAAAGATTGAAAAGTTCAAGCTTCTTTAG

Coding sequence (CDS)

ATGCAACGTAATGTCATCGTTCAACCAAGCATTGATTTGAACCAGAAAGAAGATAAAGATGTTGAAGAAGTTCTTGTTGTTCGAGTGAGGAATGGTCGAAGACCCACAAGAAGAATCCACGAGTACCTAGTAAAGTGGAAACGTGCTGAAGATCTAGAAGAAACTAGTTGGGAACGTGCCAAAAATCTAGAAGCCTGGACGCAAAAGATTGAAAAGTTCAAGCTTCTTTAG

Protein sequence

MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWKRAEDLEETSWERAKNLEAWTQKIEKFKLL*
Homology
[Close]
BLAST of MELO3C023024 vs. NCBI nr
Match: gi|659131755|ref|XP_008465840.1| (PREDICTED: uncharacterized protein LOC103503434 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 1   MQRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWKRAEDLEETSWERA 60
           +QRN++ +P IDL+QKEDKDVEE+L  RVR GRRP RRIHEYLVKWK    +EETSWE  
Sbjct: 131 LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNL-PVEETSWESV 190

Query: 61  KNLEAWTQKIEKFKL 76
           K+LEAW QKIE FKL
Sbjct: 191 KDLEAWKQKIEDFKL 204

[Close]
BLAST of MELO3C023024 vs. NCBI nr
Match: gi|659068883|ref|XP_008446904.1| (PREDICTED: uncharacterized protein LOC103489477 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 9.8e-22
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 2   QRNVIVQPSIDLNQKEDKDVEEVLVVRVRNGRRPTRRIHEYLVKWKRAEDLEETSWERAK 61
           +RN++ +P IDL+QKEDKDVEE+L  RVR GRRP RRIHEYLVKWK    +EETSWER +
Sbjct: 162 KRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNL-PMEETSWERVE 221

Query: 62  NLEAWTQKIEKFKL 76
           +LEAW QKIE FKL
Sbjct: 222 DLEAWKQKIEDFKL 234

The following BLAST results are available for this feature:
BLAST of MELO3C023024 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131755|ref|XP_008465840.1|4.4e-2270.67PREDICTED: uncharacterized protein LOC103503434 [Cucumis melo][more]
gi|659068883|ref|XP_008446904.1|9.8e-2270.27PREDICTED: uncharacterized protein LOC103489477 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023024T1MELO3C023024T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainPROFILEPS50013CHROMO_2coord: 19..76
score: 11
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 9..74
score: 3.1
IPR023780Chromo domainPFAMPF00385Chromocoord: 21..74
score: 6.7
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 15..74
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023024Silver-seed gourdcarmeB0233
MELO3C023024Silver-seed gourdcarmeB0238
MELO3C023024Silver-seed gourdcarmeB0939
MELO3C023024Silver-seed gourdcarmeB1046
MELO3C023024Cucumber (Chinese Long) v3cucmeB143
MELO3C023024Cucumber (Chinese Long) v3cucmeB231
MELO3C023024Cucumber (Chinese Long) v3cucmeB232
MELO3C023024Watermelon (97103) v2mewmbB384
MELO3C023024Watermelon (97103) v2mewmbB388
MELO3C023024Watermelon (97103) v2mewmbB403
MELO3C023024Wax gourdmewgoB450
MELO3C023024Wax gourdmewgoB479
MELO3C023024Wax gourdmewgoB470
MELO3C023024Melon (DHL92) v3.5.1memeB138
MELO3C023024Melon (DHL92) v3.5.1memeB147
MELO3C023024Cucumber (Gy14) v1cgymeB434
MELO3C023024Cucumber (Gy14) v1cgymeB624
MELO3C023024Cucurbita maxima (Rimu)cmameB234
MELO3C023024Cucurbita maxima (Rimu)cmameB338
MELO3C023024Cucurbita maxima (Rimu)cmameB576
MELO3C023024Cucurbita maxima (Rimu)cmameB760
MELO3C023024Cucurbita maxima (Rimu)cmameB845
MELO3C023024Cucurbita moschata (Rifu)cmomeB221
MELO3C023024Cucurbita moschata (Rifu)cmomeB331
MELO3C023024Cucurbita moschata (Rifu)cmomeB752
MELO3C023024Cucurbita moschata (Rifu)cmomeB828
MELO3C023024Wild cucumber (PI 183967)cpimeB141
MELO3C023024Wild cucumber (PI 183967)cpimeB226
MELO3C023024Cucumber (Chinese Long) v2cumeB131
MELO3C023024Cucumber (Chinese Long) v2cumeB231
MELO3C023024Watermelon (Charleston Gray)mewcgB385
MELO3C023024Watermelon (Charleston Gray)mewcgB388
MELO3C023024Watermelon (Charleston Gray)mewcgB402
MELO3C023024Watermelon (97103) v1mewmB410
MELO3C023024Watermelon (97103) v1mewmB413
MELO3C023024Watermelon (97103) v1mewmB430
MELO3C023024Cucurbita pepo (Zucchini)cpemeB137
MELO3C023024Cucurbita pepo (Zucchini)cpemeB310
MELO3C023024Cucurbita pepo (Zucchini)cpemeB578
MELO3C023024Cucurbita pepo (Zucchini)cpemeB694
MELO3C023024Cucurbita pepo (Zucchini)cpemeB804
MELO3C023024Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C023024Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C023024Bottle gourd (USVL1VR-Ls)lsimeB364
MELO3C023024Cucumber (Gy14) v2cgybmeB122
MELO3C023024Cucumber (Gy14) v2cgybmeB195