MELO3C023000 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023000
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr5 : 5908609 .. 5908833 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA

mRNA sequence

ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA

Coding sequence (CDS)

ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA

Protein sequence

MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYNQEFNMSPEDIRAP*
Homology
[Close]
BLAST of MELO3C023000 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK F +YD+LSY+FGKDRA GGR E+F D+GSND  GY         + D P MY+
Sbjct: 471 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 530

Query: 62  QEFNMSPEDI 72
              NMSP+D+
Sbjct: 531 PGLNMSPDDL 540

[Close]
BLAST of MELO3C023000 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSND-ASGYKRFPPKDGINMDIPTMY 61
           K L+N PFPYYD+L+Y+FG+DRA G   ETF DVGSN+   GY RF   DG N D P +Y
Sbjct: 436 KGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVY 495

Query: 62  NQEFNMSPEDIRA 74
           ++  ++  +D+RA
Sbjct: 496 SRGVDILQDDVRA 507

[Close]
BLAST of MELO3C023000 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FPYYD+L Y+F +DR  G  ++TFV+V SND   Y+ F   D  +M  PTMY+
Sbjct: 282 KGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKNPTMYS 341

Query: 62  QEFNMS 68
           Q FNMS
Sbjct: 342 QGFNMS 347

[Close]
BLAST of MELO3C023000 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FPYYD+L+Y+F KDRA G  +ETF D+GSND S Y+ F P DG +M+IPT+Y+
Sbjct: 36  KALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYS 95

Query: 62  QEFNMSPEDIRAP 75
           Q FNMS ED+ AP
Sbjct: 96  QGFNMSQEDVWAP 108

[Close]
BLAST of MELO3C023000 vs. NCBI nr
Match: gi|659133916|ref|XP_008466949.1| (PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK F +YD+LSY+FGKDRA GGR E+F D+GSND  GY  F      + D P MY+
Sbjct: 114 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYS 173

Query: 62  QEFNMSPEDI 72
              NMSP+D+
Sbjct: 174 LRLNMSPDDL 183

[Close]
BLAST of MELO3C023000 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-13
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK F +YD+LSY+FGKDRA GGR E+F D+GSN  +GY  FP     + D P MY+
Sbjct: 457 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTDFPPMYS 516

Query: 62  QEFNMSPEDI 72
              NMS +D+
Sbjct: 517 LGLNMSADDL 526

[Close]
BLAST of MELO3C023000 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FP+YD+LSY+F KD A GGR E+F DVGSND +GY  F      + D   MY+
Sbjct: 65  KGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYS 124

Query: 62  QEFNMSPEDI 72
           +  NMSP+++
Sbjct: 125 RGLNMSPDEL 134

[Close]
BLAST of MELO3C023000 vs. NCBI nr
Match: gi|659112453|ref|XP_008456229.1| (PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L NK F +YD+LSY+F KDRA GGR E+F DVGSND +GY+ F      + D   MYN
Sbjct: 118 KGLFNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYN 177

Query: 62  QEFNMSPEDI 72
           Q  NMSP ++
Sbjct: 178 QRLNMSPGEL 187

The following BLAST results are available for this feature:
BLAST of MELO3C023000 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME2.8e-1252.86Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME1.1e-1152.05Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME1.3e-0953.03Transposase OS=Cucumis melo PE=4 SV=1[more]
BLAST of MELO3C023000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068476|ref|XP_008444620.1|2.9e-1861.64PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|659133916|ref|XP_008466949.1|2.8e-1354.29PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|8.1e-1352.86PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|1.1e-1251.43PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|659112453|ref|XP_008456229.1|1.1e-1254.29PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023000T1MELO3C023000T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023000Watermelon (97103) v2mewmbB384
MELO3C023000Watermelon (97103) v2mewmbB388
MELO3C023000Watermelon (97103) v2mewmbB403
MELO3C023000Wax gourdmewgoB450
MELO3C023000Wax gourdmewgoB479
MELO3C023000Wax gourdmewgoB470
MELO3C023000Melon (DHL92) v3.5.1memeB138
MELO3C023000Melon (DHL92) v3.5.1memeB147
MELO3C023000Cucumber (Gy14) v1cgymeB434
MELO3C023000Cucumber (Gy14) v1cgymeB624
MELO3C023000Cucurbita maxima (Rimu)cmameB234
MELO3C023000Cucurbita maxima (Rimu)cmameB338
MELO3C023000Cucurbita maxima (Rimu)cmameB576
MELO3C023000Cucurbita maxima (Rimu)cmameB760
MELO3C023000Cucurbita maxima (Rimu)cmameB845
MELO3C023000Cucurbita moschata (Rifu)cmomeB221
MELO3C023000Cucurbita moschata (Rifu)cmomeB331
MELO3C023000Cucurbita moschata (Rifu)cmomeB467
MELO3C023000Cucurbita moschata (Rifu)cmomeB752
MELO3C023000Cucurbita moschata (Rifu)cmomeB828
MELO3C023000Wild cucumber (PI 183967)cpimeB141
MELO3C023000Wild cucumber (PI 183967)cpimeB226
MELO3C023000Cucumber (Chinese Long) v2cumeB131
MELO3C023000Cucumber (Chinese Long) v2cumeB231
MELO3C023000Watermelon (Charleston Gray)mewcgB385
MELO3C023000Watermelon (Charleston Gray)mewcgB388
MELO3C023000Watermelon (Charleston Gray)mewcgB402
MELO3C023000Watermelon (97103) v1mewmB410
MELO3C023000Watermelon (97103) v1mewmB413
MELO3C023000Watermelon (97103) v1mewmB430
MELO3C023000Cucurbita pepo (Zucchini)cpemeB137
MELO3C023000Cucurbita pepo (Zucchini)cpemeB310
MELO3C023000Cucurbita pepo (Zucchini)cpemeB578
MELO3C023000Cucurbita pepo (Zucchini)cpemeB694
MELO3C023000Cucurbita pepo (Zucchini)cpemeB804
MELO3C023000Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C023000Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C023000Bottle gourd (USVL1VR-Ls)lsimeB364
MELO3C023000Cucumber (Gy14) v2cgybmeB122
MELO3C023000Cucumber (Gy14) v2cgybmeB195
MELO3C023000Silver-seed gourdcarmeB0233
MELO3C023000Silver-seed gourdcarmeB0238
MELO3C023000Silver-seed gourdcarmeB0778
MELO3C023000Silver-seed gourdcarmeB0939
MELO3C023000Silver-seed gourdcarmeB1046
MELO3C023000Cucumber (Chinese Long) v3cucmeB143
MELO3C023000Cucumber (Chinese Long) v3cucmeB232