MELO3C022996 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022996
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCryptochrome 2A apoprotein
Locationchr5 : 5783695 .. 5784018 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTGGAAGCTCTGAATCCCCAGATATGGGTTGTAACAAGACCATAGTATGGTTTCGTAGAGACCTCAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTGCTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAAGAGGGACAATTCTATCCTGGTCGGGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCCATTTGAAACAGTCTCTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTTTCTCTCTTCTGGAGTGTATCAATGCTACTGGGGCAACAAAAGTAG

mRNA sequence

ATGGATGGTGGAAGCTCTGAATCCCCAGATATGGGTTGTAACAAGACCATAGTATGGTTTCGTAGAGACCTCAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTGCTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAAGAGGGACAATTCTATCCTGGTCGGGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCCATTTGAAACAGTCTCTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTTTCTCTCTTCTGGAGTGTATCAATGCTACTGGGGCAACAAAAGTAG

Coding sequence (CDS)

ATGGATGGTGGAAGCTCTGAATCCCCAGATATGGGTTGTAACAAGACCATAGTATGGTTTCGTAGAGACCTCAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTGCTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAAGAGGGACAATTCTATCCTGGTCGGGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCCATTTGAAACAGTCTCTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTTTCTCTCTTCTGGAGTGTATCAATGCTACTGGGGCAACAAAAGTAG

Protein sequence

MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSLFWSVSMLLGQQK*
Homology
[Close]
BLAST of MELO3C022996 vs. Swiss-Prot
Match: CRY2_ARATH (Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 7.8e-33
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1 

Query: 15 KTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQ 74
          KTIVWFRRDLRIEDNPALAAAA  G V+PV+IWCP+EEGQFYPGR SRWW+KQSLAHL Q
Sbjct: 6  KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 75 SLKSLGADLVLMKTQSTIFSL 96
          SLK+LG+DL L+KT +TI ++
Sbjct: 66 SLKALGSDLTLIKTHNTISAI 86

[Close]
BLAST of MELO3C022996 vs. Swiss-Prot
Match: CRY1_SINAL (Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.8e-33
Identity = 62/81 (76.54%), Postives = 73/81 (90.12%), Query Frame = 1 

Query: 15 KTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQ 74
          KTIVWFRRDLRIEDNPALAAAA  G V+PV+IWCP+EEGQFYPGR SRWW+KQSLAHL+Q
Sbjct: 6  KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLRQ 65

Query: 75 SLKSLGADLVLMKTQSTIFSL 96
          SLK+LG++L L+KT ST+ ++
Sbjct: 66 SLKALGSELTLIKTHSTVSAI 86

[Close]
BLAST of MELO3C022996 vs. Swiss-Prot
Match: CRY1_ARATH (Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-23
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 1  MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRV 60
          M G  S     GC  +IVWFRRDLR+EDNPALAAA R G V  +++W P+EEG ++PGRV
Sbjct: 1  MSGSVSGCGSGGC--SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRV 60

Query: 61 SRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSL 96
          SRWWLK SLA L  SL+SLG  L+  ++  ++ SL
Sbjct: 61 SRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASL 93

[Close]
BLAST of MELO3C022996 vs. Swiss-Prot
Match: PHRA_AGRFC (Deoxyribodipyrimidine photo-lyase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=phrA PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 35/70 (50.00%), Postives = 39/70 (55.71%), Query Frame = 1 

Query: 17 IVWFRRDLRIEDNPALAAAARNGF-VYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQS 76
          IVWFR+DLR+ DN AL AA  +G  V PVYI   +E+     G    WWL  SLA L  S
Sbjct: 9  IVWFRKDLRLSDNLALLAAVEHGGPVIPVYI---REKSAGPLGGAQEWWLHHSLAALSSS 68

Query: 77 LKSLGADLVL 86
          L+  G  LVL
Sbjct: 69 LEKAGGRLVL 75

[Close]
BLAST of MELO3C022996 vs. TrEMBL
Match: A0A061EMF3_THECC (Cryptochrome 2 isoform 2 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 1 

Query: 11 MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
          M  +KTIVWFRRDLRI+DNPALAAAARNG V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1  MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71 HLKQSLKSLGADLVLMKTQSTIFSL 96
          HL+QSL+SLGA+LVL+KTQST+ +L
Sbjct: 61 HLEQSLRSLGAELVLIKTQSTLSAL 85

[Close]
BLAST of MELO3C022996 vs. TrEMBL
Match: Q6EAM9_PEA (Cryptochrome 2A apoprotein OS=Pisum sativum GN=CRY2A PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 11  MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
           MG N+TIVWFRRDLRIEDNPALAAAAR+G V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1   MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  HLKQSLKSLGADLVLMKTQSTIFSLFWSVSML 103
           HL QSLKSLGA LVL+KT ST+ +L   V+ +
Sbjct: 61  HLDQSLKSLGAKLVLIKTDSTLNALLECVNAI 92

[Close]
BLAST of MELO3C022996 vs. TrEMBL
Match: Q6YBV8_PEA (Cryptochrome 2A (Fragment) OS=Pisum sativum GN=CRY2A PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 11  MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
           MG N+TIVWFRRDLRIEDNPALAAAAR+G V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1   MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  HLKQSLKSLGADLVLMKTQSTIFSLFWSVSML 103
           HL QSLKSLGA LVL+KT ST+ +L   V+ +
Sbjct: 61  HLDQSLKSLGAKLVLIKTDSTLNALLECVNAI 92

[Close]
BLAST of MELO3C022996 vs. TrEMBL
Match: A0A061ENT7_THECC (Cryptochrome 2 isoform 3 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 1 

Query: 11 MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
          M  +KTIVWFRRDLRI+DNPALAAAARNG V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1  MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71 HLKQSLKSLGADLVLMKTQSTIFSL 96
          HL+QSL+SLGA+LVL+KTQST+ +L
Sbjct: 61 HLEQSLRSLGAELVLIKTQSTLSAL 85

[Close]
BLAST of MELO3C022996 vs. TrEMBL
Match: A0A061ELW0_THECC (Cryptochrome 2 isoform 1 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 1 

Query: 11 MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
          M  +KTIVWFRRDLRI+DNPALAAAARNG V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1  MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71 HLKQSLKSLGADLVLMKTQSTIFSL 96
          HL+QSL+SLGA+LVL+KTQST+ +L
Sbjct: 61 HLEQSLRSLGAELVLIKTQSTLSAL 85

[Close]
BLAST of MELO3C022996 vs. TAIR10
Match: AT1G04400.2 (AT1G04400.2 cryptochrome 2)

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-34
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1 

Query: 15 KTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQ 74
          KTIVWFRRDLRIEDNPALAAAA  G V+PV+IWCP+EEGQFYPGR SRWW+KQSLAHL Q
Sbjct: 6  KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 75 SLKSLGADLVLMKTQSTIFSL 96
          SLK+LG+DL L+KT +TI ++
Sbjct: 66 SLKALGSDLTLIKTHNTISAI 86

[Close]
BLAST of MELO3C022996 vs. TAIR10
Match: AT4G08920.1 (AT4G08920.1 cryptochrome 1)

HSP 1 Score: 110.2 bits (274), Expect = 8.3e-25
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 1  MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRV 60
          M G  S     GC  +IVWFRRDLR+EDNPALAAA R G V  +++W P+EEG ++PGRV
Sbjct: 1  MSGSVSGCGSGGC--SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRV 60

Query: 61 SRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSL 96
          SRWWLK SLA L  SL+SLG  L+  ++  ++ SL
Sbjct: 61 SRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASL 93

[Close]
BLAST of MELO3C022996 vs. TAIR10
Match: AT3G15620.1 (AT3G15620.1 DNA photolyase family protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 16  TIVWFRRDLRIEDNPALAAAARNG-FVYPVYIWCP----KEEGQFYPGR----VSR-WWL 75
           +++WFR+ LR+ DNPAL  A++   F+YPV++  P     +   F PG     V+R  +L
Sbjct: 26  SLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFL 85

Query: 76  KQSLAHLKQSLKSLGADLVLMK 88
            +SL  L  SLK LG+ L++ K
Sbjct: 86  LESLKDLDSSLKKLGSRLLVFK 107

[Close]
BLAST of MELO3C022996 vs. NCBI nr
Match: gi|659121397|ref|XP_008460640.1| (PREDICTED: cryptochrome-1 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRV 60
          MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRV
Sbjct: 1  MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRV 60

Query: 61 SRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSL 96
          SRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSL
Sbjct: 61 SRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSL 95

[Close]
BLAST of MELO3C022996 vs. NCBI nr
Match: gi|45935260|gb|AAS79665.1| (cryptochrome 2A apoprotein [Pisum sativum])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 11  MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
           MG N+TIVWFRRDLRIEDNPALAAAAR+G V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1   MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  HLKQSLKSLGADLVLMKTQSTIFSLFWSVSML 103
           HL QSLKSLGA LVL+KT ST+ +L   V+ +
Sbjct: 61  HLDQSLKSLGAKLVLIKTDSTLNALLECVNAI 92

[Close]
BLAST of MELO3C022996 vs. NCBI nr
Match: gi|590659371|ref|XP_007035109.1| (Cryptochrome 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 1 

Query: 11 MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
          M  +KTIVWFRRDLRI+DNPALAAAARNG V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1  MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71 HLKQSLKSLGADLVLMKTQSTIFSL 96
          HL+QSL+SLGA+LVL+KTQST+ +L
Sbjct: 61 HLEQSLRSLGAELVLIKTQSTLSAL 85

[Close]
BLAST of MELO3C022996 vs. NCBI nr
Match: gi|37725009|gb|AAO23971.1| (cryptochrome 2A [Pisum sativum])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 11  MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
           MG N+TIVWFRRDLRIEDNPALAAAAR+G V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1   MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  HLKQSLKSLGADLVLMKTQSTIFSLFWSVSML 103
           HL QSLKSLGA LVL+KT ST+ +L   V+ +
Sbjct: 61  HLDQSLKSLGAKLVLIKTDSTLNALLECVNAI 92

[Close]
BLAST of MELO3C022996 vs. NCBI nr
Match: gi|590659375|ref|XP_007035110.1| (Cryptochrome 2 isoform 2 [Theobroma cacao])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 1 

Query: 11 MGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLA 70
          M  +KTIVWFRRDLRI+DNPALAAAARNG V+PV+IWCPKEEGQFYPGRVSRWWLKQSLA
Sbjct: 1  MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71 HLKQSLKSLGADLVLMKTQSTIFSL 96
          HL+QSL+SLGA+LVL+KTQST+ +L
Sbjct: 61 HLEQSLRSLGAELVLIKTQSTLSAL 85

The following BLAST results are available for this feature:
BLAST of MELO3C022996 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRY2_ARATH7.8e-3377.78Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2[more]
CRY1_SINAL7.8e-3376.54Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1[more]
CRY1_ARATH1.5e-2355.79Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2[more]
PHRA_AGRFC3.9e-0850.00Deoxyribodipyrimidine photo-lyase OS=Agrobacterium fabrum (strain C58 / ATCC 339... [more]
BLAST of MELO3C022996 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061EMF3_THECC7.6e-3583.53Cryptochrome 2 isoform 2 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1[more]
Q6EAM9_PEA7.6e-3579.35Cryptochrome 2A apoprotein OS=Pisum sativum GN=CRY2A PE=2 SV=1[more]
Q6YBV8_PEA7.6e-3579.35Cryptochrome 2A (Fragment) OS=Pisum sativum GN=CRY2A PE=2 SV=1[more]
A0A061ENT7_THECC7.6e-3583.53Cryptochrome 2 isoform 3 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1[more]
A0A061ELW0_THECC7.6e-3583.53Cryptochrome 2 isoform 1 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1[more]
BLAST of MELO3C022996 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04400.24.4e-3477.78 cryptochrome 2[more]
AT4G08920.18.3e-2555.79 cryptochrome 1[more]
AT3G15620.16.0e-0739.02 DNA photolyase family protein[more]
BLAST of MELO3C022996 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121397|ref|XP_008460640.1|1.0e-48100.00PREDICTED: cryptochrome-1 [Cucumis melo][more]
gi|45935260|gb|AAS79665.1|1.1e-3479.35cryptochrome 2A apoprotein [Pisum sativum][more]
gi|590659371|ref|XP_007035109.1|1.1e-3483.53Cryptochrome 2 isoform 1 [Theobroma cacao][more]
gi|37725009|gb|AAO23971.1|1.1e-3479.35cryptochrome 2A [Pisum sativum][more]
gi|590659375|ref|XP_007035110.1|1.1e-3483.53Cryptochrome 2 isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0010617 circadian regulation of calcium ion oscillation
biological_process GO:0006281 DNA repair
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0009637 response to blue light
biological_process GO:0009414 response to water deprivation
biological_process GO:0010118 stomatal movement
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
molecular_function GO:0003913 DNA photolyase activity
molecular_function GO:0042802 identical protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU60120melon EST collection version 4.0transcribed_cluster
MU62733melon EST collection version 4.0transcribed_cluster
MU62980melon EST collection version 4.0transcribed_cluster
MU63040melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022996T1MELO3C022996T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU60120MU60120transcribed_cluster
MU62733MU62733transcribed_cluster
MU62980MU62980transcribed_cluster
MU63040MU63040transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 16..89
score: 2.2
IPR006050DNA photolyase, N-terminalPROFILEPS51645PHR_CRY_ALPHA_BETAcoord: 14..107
score: 26
IPR006050DNA photolyase, N-terminalunknownSSF52425Cryptochrome/photolyase, N-terminal domaincoord: 14..89
score: 2.75
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 11..89
score: 3.2
NoneNo IPR availablePANTHERPTHR11455CRYPTOCHROMEcoord: 15..96
score: 1.7
NoneNo IPR availablePANTHERPTHR11455:SF24CRYPTOCHROME-1coord: 15..96
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022996Cla97C06G116630Watermelon (97103) v2mewmbB388
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022996Cucurbita pepo (Zucchini)cpemeB137
MELO3C022996Cucurbita pepo (Zucchini)cpemeB310
MELO3C022996Cucurbita pepo (Zucchini)cpemeB578
MELO3C022996Cucurbita pepo (Zucchini)cpemeB694
MELO3C022996Cucurbita pepo (Zucchini)cpemeB804
MELO3C022996Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C022996Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C022996Bottle gourd (USVL1VR-Ls)lsimeB364
MELO3C022996Cucumber (Gy14) v2cgybmeB122
MELO3C022996Cucumber (Gy14) v2cgybmeB195
MELO3C022996Silver-seed gourdcarmeB0233
MELO3C022996Silver-seed gourdcarmeB0238
MELO3C022996Silver-seed gourdcarmeB0778
MELO3C022996Silver-seed gourdcarmeB0939
MELO3C022996Silver-seed gourdcarmeB1046
MELO3C022996Cucumber (Chinese Long) v3cucmeB143
MELO3C022996Cucumber (Chinese Long) v3cucmeB232
MELO3C022996Watermelon (97103) v2mewmbB384
MELO3C022996Watermelon (97103) v2mewmbB403
MELO3C022996Wax gourdmewgoB450
MELO3C022996Wax gourdmewgoB479
MELO3C022996Wax gourdmewgoB470
MELO3C022996Melon (DHL92) v3.5.1memeB138
MELO3C022996Melon (DHL92) v3.5.1memeB147
MELO3C022996Cucumber (Gy14) v1cgymeB434
MELO3C022996Cucumber (Gy14) v1cgymeB624
MELO3C022996Cucurbita maxima (Rimu)cmameB234
MELO3C022996Cucurbita maxima (Rimu)cmameB338
MELO3C022996Cucurbita maxima (Rimu)cmameB576
MELO3C022996Cucurbita maxima (Rimu)cmameB760
MELO3C022996Cucurbita maxima (Rimu)cmameB845
MELO3C022996Cucurbita moschata (Rifu)cmomeB221
MELO3C022996Cucurbita moschata (Rifu)cmomeB331
MELO3C022996Cucurbita moschata (Rifu)cmomeB467
MELO3C022996Cucurbita moschata (Rifu)cmomeB752
MELO3C022996Cucurbita moschata (Rifu)cmomeB828
MELO3C022996Wild cucumber (PI 183967)cpimeB141
MELO3C022996Wild cucumber (PI 183967)cpimeB226
MELO3C022996Cucumber (Chinese Long) v2cumeB131
MELO3C022996Cucumber (Chinese Long) v2cumeB231
MELO3C022996Watermelon (Charleston Gray)mewcgB385
MELO3C022996Watermelon (Charleston Gray)mewcgB388
MELO3C022996Watermelon (Charleston Gray)mewcgB402
MELO3C022996Watermelon (97103) v1mewmB410
MELO3C022996Watermelon (97103) v1mewmB413
MELO3C022996Watermelon (97103) v1mewmB430