MELO3C022991.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C022991.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMADS-box protein AGL42-like isoform X1
Locationchr05 : 5693909 .. 5694148 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTGCTGATTTATATTAAACACCTTCAAATCACTGCAACTTTTTGGCAATCAGTTGGAAGAAGGCAGTTTCAGTATGGTAGCTGCCGCGGTGGCGGTGGCGACTTGATTTTTGGCAATCTCGGTTTTTTGGGAAAATTTTTCTTCAACCAAGGTGGGAGTTTTGGCAAAGATTTCCCGACCGCCGATGGGACGGTGGCGGAGGGAGTGAGTCTGTGGTGGTTCTCCGGCAAGTAA

mRNA sequence

ATGGGGGTGCTGATTTATATTAAACACCTTCAAATCACTGCAACTTTTTGGCAATCAGTTGGAAGAAGGCAGTTTCAGTATGGTAGCTGCCGCGGTGGCGGTGGCGACTTGATTTTTGGCAATCTCGGTTTTTTGGGAAAATTTTTCTTCAACCAAGGTGGGAGTTTTGGCAAAGATTTCCCGACCGCCGATGGGACGGTGGCGGAGGGAGTGAGTCTGTGGTGGTTCTCCGGCAAGTAA

Coding sequence (CDS)

ATGGGGGTGCTGATTTATATTAAACACCTTCAAATCACTGCAACTTTTTGGCAATCAGTTGGAAGAAGGCAGTTTCAGTATGGTAGCTGCCGCGGTGGCGGTGGCGACTTGATTTTTGGCAATCTCGGTTTTTTGGGAAAATTTTTCTTCAACCAAGGTGGGAGTTTTGGCAAAGATTTCCCGACCGCCGATGGGACGGTGGCGGAGGGAGTGAGTCTGTGGTGGTTCTCCGGCAAGTAA

Protein sequence

MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDFPTADGTVAEGVSLWWFSGK
Homology
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BLAST of MELO3C022991.2 vs. NCBI nr
Match: WP_060875670.1 (hypothetical protein [Myroides odoratus])

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 31 RGGG--GDLIFGNL-GFLGKFFFNQGGSFGKDFPTADGTVAEGVSLWWFSG 79
          RGGG  G LIFG+L GFLGK F NQGG F K+ PTAD TVAEGVSLWW SG
Sbjct: 11 RGGGXXGKLIFGSLGGFLGKIFLNQGGIFCKESPTADETVAEGVSLWWVSG 61

The following BLAST results are available for this feature:
BLAST of MELO3C022991.2 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_060875670.12.9e-0974.51hypothetical protein [Myroides odoratus][more]
BLAST of MELO3C022991.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C022991.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C022991.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000165 MAPK cascade
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022991.2.1MELO3C022991.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022991.2Cucumber (Gy14) v2cgybmedB120
MELO3C022991.2Cucumber (Gy14) v2cgybmedB197
MELO3C022991.2Cucumber (Gy14) v1cgymedB429
MELO3C022991.2Cucumber (Gy14) v1cgymedB620
MELO3C022991.2Cucurbita maxima (Rimu)cmamedB266
MELO3C022991.2Cucurbita maxima (Rimu)cmamedB394
MELO3C022991.2Cucurbita maxima (Rimu)cmamedB548
MELO3C022991.2Cucurbita maxima (Rimu)cmamedB657
MELO3C022991.2Cucurbita maxima (Rimu)cmamedB860
MELO3C022991.2Cucurbita maxima (Rimu)cmamedB946
MELO3C022991.2Cucurbita moschata (Rifu)cmomedB250
MELO3C022991.2Cucurbita moschata (Rifu)cmomedB381
MELO3C022991.2Cucurbita moschata (Rifu)cmomedB539
MELO3C022991.2Cucurbita moschata (Rifu)cmomedB644
MELO3C022991.2Cucurbita moschata (Rifu)cmomedB854
MELO3C022991.2Cucurbita moschata (Rifu)cmomedB935
MELO3C022991.2Cucurbita pepo (Zucchini)cpemedB166
MELO3C022991.2Cucurbita pepo (Zucchini)cpemedB275
MELO3C022991.2Cucurbita pepo (Zucchini)cpemedB362
MELO3C022991.2Cucurbita pepo (Zucchini)cpemedB685
MELO3C022991.2Cucurbita pepo (Zucchini)cpemedB825
MELO3C022991.2Cucurbita pepo (Zucchini)cpemedB944
MELO3C022991.2Wild cucumber (PI 183967)cpimedB134
MELO3C022991.2Wild cucumber (PI 183967)cpimedB221
MELO3C022991.2Cucumber (Chinese Long) v2cumedB134
MELO3C022991.2Cucumber (Chinese Long) v2cumedB220
MELO3C022991.2Melon (DHL92) v3.6.1medmedB144
MELO3C022991.2Bottle gourd (USVL1VR-Ls)lsimedB027
MELO3C022991.2Bottle gourd (USVL1VR-Ls)lsimedB375
MELO3C022991.2Bottle gourd (USVL1VR-Ls)lsimedB379
MELO3C022991.2Watermelon (Charleston Gray)medwcgB376
MELO3C022991.2Watermelon (Charleston Gray)medwcgB378
MELO3C022991.2Watermelon (Charleston Gray)medwcgB390
MELO3C022991.2Watermelon (97103) v1medwmB401
MELO3C022991.2Watermelon (97103) v1medwmB404
MELO3C022991.2Watermelon (97103) v1medwmB418
MELO3C022991.2Silver-seed gourdcarmedB0240
MELO3C022991.2Silver-seed gourdcarmedB0246
MELO3C022991.2Silver-seed gourdcarmedB0760
MELO3C022991.2Silver-seed gourdcarmedB0790
MELO3C022991.2Silver-seed gourdcarmedB0945
MELO3C022991.2Silver-seed gourdcarmedB1060
MELO3C022991.2Cucumber (Chinese Long) v3cucmedB136
MELO3C022991.2Cucumber (Chinese Long) v3cucmedB224
MELO3C022991.2Watermelon (97103) v2medwmbB374
MELO3C022991.2Watermelon (97103) v2medwmbB378
MELO3C022991.2Watermelon (97103) v2medwmbB391
MELO3C022991.2Wax gourdmedwgoB453
MELO3C022991.2Wax gourdmedwgoB471
MELO3C022991.2Wax gourdmedwgoB481