MELO3C022953 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022953
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description60 kDa chaperonin
Locationchr10 : 25118349 .. 25118594 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACCATGTTGACAGCGATGTACGAAGACCATCAGAGACAACTAGGAGGATTGAAACTGACTGAGATAAGCATGAGAAAGAGGAAGGTCCGTATTGAAGATGTTGTCGAAGAGGAAGCGGATGAAGGAGAAACGTCCATGAGCATAGAAACAGGGGTCGGACATGATCGAATCAAGCTTAAAAAATTGGAGTTGCCCATTTTTAACGAGGAAGACCTGGATGGTTGGTTCTATAGAGCATAG

mRNA sequence

ATGCACACCATGTTGACAGCGATGTACGAAGACCATCAGAGACAACTAGGAGGATTGAAACTGACTGAGATAAGCATGAGAAAGAGGAAGGTCCGTATTGAAGATGTTGTCGAAGAGGAAGCGGATGAAGGAGAAACGTCCATGAGCATAGAAACAGGGGTCGGACATGATCGAATCAAGCTTAAAAAATTGGAGTTGCCCATTTTTAACGAGGAAGACCTGGATGGTTGGTTCTATAGAGCATAG

Coding sequence (CDS)

ATGCACACCATGTTGACAGCGATGTACGAAGACCATCAGAGACAACTAGGAGGATTGAAACTGACTGAGATAAGCATGAGAAAGAGGAAGGTCCGTATTGAAGATGTTGTCGAAGAGGAAGCGGATGAAGGAGAAACGTCCATGAGCATAGAAACAGGGGTCGGACATGATCGAATCAAGCTTAAAAAATTGGAGTTGCCCATTTTTAACGAGGAAGACCTGGATGGTTGGTTCTATAGAGCATAG

Protein sequence

MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA*
Homology
[Close]
BLAST of MELO3C022953 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-21
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 1   MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIK 60
           MH MLT MYED QRQ GG +LT +S  KRK+R ED+V+ + +EGETS+S+E G G DRIK
Sbjct: 37  MHAMLTEMYEDCQRQPGGFELTRVSTGKRKIRTEDLVDGD-EEGETSLSLEPGAGQDRIK 96

Query: 61  LKKLELPIFNEEDLDGWFYRA 82
            KKLE+P+FN ED DGW Y+A
Sbjct: 97  FKKLEMPVFNGEDPDGWIYKA 116

[Close]
BLAST of MELO3C022953 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1 

Query: 1   MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIK 60
           MH ML+ +YED QRQ GG KLT IS  KRKVR E+V EEE +EGETS+S+ET  G  R K
Sbjct: 37  MHAMLSVIYEDRQRQTGGSKLTGISTGKRKVRNEEVTEEEGEEGETSLSVETEAGQKRFK 96

Query: 61  LKKLELPIFNEEDLDG----WF 79
            +KLE+P+FN   L+G    WF
Sbjct: 97  FRKLEMPVFNVVSLEGRGMNWF 118

[Close]
BLAST of MELO3C022953 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 107.8 bits (268), Expect = 8.9e-21
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 1   MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIK 60
           MH MLT MYED QRQ GG +LT +S  KRK+R ED+V+ + +EGETS+S+E G G DRIK
Sbjct: 37  MHAMLTEMYEDCQRQPGGFELTRVSTGKRKIRTEDLVDGD-EEGETSLSLEPGAGQDRIK 96

Query: 61  LKKLELPIFNEEDLDGWFYRA 82
            KKLE+P+FN ED DGW Y+A
Sbjct: 97  FKKLEMPVFNGEDPDGWIYKA 116

[Close]
BLAST of MELO3C022953 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1 

Query: 1   MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIK 60
           MH ML+ +YED QRQ GG KLT IS  KRKVR E+V EEE +EGETS+S+ET  G  R K
Sbjct: 37  MHAMLSVIYEDRQRQTGGSKLTGISTGKRKVRNEEVTEEEGEEGETSLSVETEAGQKRFK 96

Query: 61  LKKLELPIFNEEDLDG----WF 79
            +KLE+P+FN   L+G    WF
Sbjct: 97  FRKLEMPVFNVVSLEGRGMNWF 118

The following BLAST results are available for this feature:
BLAST of MELO3C022953 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC35_CUCME6.2e-2162.96Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GC18_CUCME1.4e-1758.54Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C022953 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136196|gb|ADN34034.1|8.9e-2162.96gypsy/ty3 element polyprotein [Cucumis melo subsp. melo][more]
gi|307136175|gb|ADN34016.1|2.0e-1758.54ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022953T1MELO3C022953T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022953Watermelon (97103) v2mewmbB050
MELO3C022953Wax gourdmewgoB088
MELO3C022953Watermelon (Charleston Gray)mewcgB046
MELO3C022953Watermelon (97103) v1mewmB080
MELO3C022953Bottle gourd (USVL1VR-Ls)lsimeB082