MELO3C022950 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022950
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative U-box domain-containing protein 55
Locationchr10 : 25023761 .. 25024999 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTAACTATTCAATCAGACTCTTCAAGTCTTCCCCCAATTCCTTCAACAGCATTGTTGCATCCCTCTGGGCCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATTCTGAGGAATCCTTCCTCGTACTCTCAGATAGGTAGGCCAAAGGTATTCCAGCCTAGACCTCTAATTAATGGTTATTTCACCAAAACCATGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTACTCAAATATTTCCTCACGAGTTTAACTTCTTACCTGAGGATCTTTTAAAAACCAAGACCTTCTACGAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACCCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTACTCAAAGTTGAGGATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGTTGTTTGTGTGAAGAAAATTCTCTCACCCTTTCAAACCACCATCATACAATTATCGTGACTACACAAAAGCATGGTATATTGTATTTTGGCTCCAAGCATATAACCATTCCTGGTTTGTGACATTTTGCAAACAAGCTTACAAAATGCACTTCCCAAATTGGTTTCAAAACTGGTGGATGTATTTTGGACTCTCCGAAGAAATATTTCCGGTAGAAGTTCAACGTTCATACCACCTTTTTCAACAAAGTATCTATTCGTCACCTCTTTCAAAGACGTTTAGATTTGCTTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCGGGAAACTTCAAAGCCCTAAGTAAATCCCTCAGAATCAAATGGTGGGAAAAATTCAACTACTCCCATCTCGAAGTCAACAAAATCAACGATTGGTTTAAAGCCAACATTCACCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCATTCAACAGGAATTCAATTCTGTTGTCAATAACGTTGTTGTAAACCTTTCAGACGATAACGACGATTTACTAGAGGACGCTTCCCCAGCCTCCGTTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

mRNA sequence

ATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTAACTATTCAATCAGACTCTTCAAGTCTTCCCCCAATTCCTTCAACAGCATTGTTGCATCCCTCTGGGCCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATTCTGAGGAATCCTTCCTCGTACTCTCAGATAGGTAGGCCAAAGCTAGGACCTTCGGGAAACTTCAAAGCCCTAAGTAAATCCCTCAGAATCAAATGGTGGGAAAAATTCAACTACTCCCATCTCGAAGTCAACAAAATCAACGATTGGTTTAAAGCCAACATTCACCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCATTCAACAGGAATTCAATTCTGTTGTCAATAACGTTGTTGTAAACCTTTCAGACGATAACGACGATTTACTAGAGGACGCTTCCCCAGCCTCCGTTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

Coding sequence (CDS)

ATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTAACTATTCAATCAGACTCTTCAAGTCTTCCCCCAATTCCTTCAACAGCATTGTTGCATCCCTCTGGGCCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATTCTGAGGAATCCTTCCTCGTACTCTCAGATAGGTAGGCCAAAGCTAGGACCTTCGGGAAACTTCAAAGCCCTAAGTAAATCCCTCAGAATCAAATGGTGGGAAAAATTCAACTACTCCCATCTCGAAGTCAACAAAATCAACGATTGGTTTAAAGCCAACATTCACCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCATTCAACAGGAATTCAATTCTGTTGTCAATAACGTTGTTGTAAACCTTTCAGACGATAACGACGATTTACTAGAGGACGCTTCCCCAGCCTCCGTTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

Protein sequence

MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKRAASPAASSSRSAILRNPSSYSQIGRPKLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKINDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASIQQEFNSVVNNVVVNLSDDNDDLLEDASPASVNDVDDLDYDPYEGLDINDPFLDTQPY*
Homology
[Close]
BLAST of MELO3C022950 vs. TrEMBL
Match: A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.1e-14
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 76  KLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKINDWFKANIHLQDMTRQEDEAFLLTKNA 135
           +L     FK L K LR+KWW+      +   KI  WFK N HL   +++E++ FLL KN+
Sbjct: 19  QLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL---SQEEEDQFLLRKNS 78

Query: 136 VMSTLAGASIQQEFNSVVNNVVVNL-SDDNDDLLED---ASPASVNDVDDLDYDPYEGLD 195
           +M+ +AGA  + +  +V+  V+  +  DD ++ +ED   +S +  ND+ D D DPY   D
Sbjct: 79  IMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI-DFDNDPYYNFD 138

Query: 196 INDPFLDT 200
           I+DP+ D+
Sbjct: 139 ISDPYFDS 139

[Close]
BLAST of MELO3C022950 vs. NCBI nr
Match: gi|700198501|gb|KGN53659.1| (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 76  KLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKINDWFKANIHLQDMTRQEDEAFLLTKNA 135
           +L     FK L K LR+KWW+      +   KI  WFK N HL   +++E++ FLL KN+
Sbjct: 19  QLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL---SQEEEDQFLLRKNS 78

Query: 136 VMSTLAGASIQQEFNSVVNNVVVNL-SDDNDDLLED---ASPASVNDVDDLDYDPYEGLD 195
           +M+ +AGA  + +  +V+  V+  +  DD ++ +ED   +S +  ND+ D D DPY   D
Sbjct: 79  IMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI-DFDNDPYYNFD 138

Query: 196 INDPFLDT 200
           I+DP+ D+
Sbjct: 139 ISDPYFDS 139

The following BLAST results are available for this feature:
BLAST of MELO3C022950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXT5_CUCSA8.1e-1436.72Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1[more]
BLAST of MELO3C022950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198501|gb|KGN53659.1|1.2e-1336.72hypothetical protein Csa_4G097660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022950T1MELO3C022950T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022950Watermelon (97103) v2mewmbB050
MELO3C022950Wax gourdmewgoB088
MELO3C022950Watermelon (Charleston Gray)mewcgB046
MELO3C022950Watermelon (97103) v1mewmB080
MELO3C022950Bottle gourd (USVL1VR-Ls)lsimeB082