MELO3C022948 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022948
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S8
Locationchr10 : 25019240 .. 25020082 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAGATTGAAACCAGTTTACAATCAAATCAATGTTATTTCCGACGATAAAGAACGTTTCAGAGAACATTACAGTATATATATCGATCAATGGATCAAGGCTCCTGCTGAAACAAGGAAGCCATTTCTAACCATGCCTGACTTCGTTAAAGGCATGTTAAAGGTGGAAAGAGCCAAAAATGAAGCTCTTGTCAAGAAACTACAAGCAGATGGCCTAGTTGCCATGATTAAGGGATCAACTATCTGGGTTACTACCAGTGGAAAAGAAGTAGCTTCAAATTATCCGCCTGAAGAAGAAGCTTATTTCCCTCATTCCGCCATTCCTGCTATCAAGATGGTTTCATCTCCTTACAAAACAATCAATGAAGATAAAGTTCAAACGGTTGGAGTTCGTGAAATTAAGAATATCCAACATTAGCTCAATTTCACAAATAAAGTTCTTTCTACGGTCTCTAAGGCAGTAGAGCGAATTGAAAATCCGGGACTTCCTTTAAAAAATAAGAATCCCGAGATCCCTCAAATCAACCCAAATCAACCGATCTTTCAGCCAAACAGCTTTAATATCGGCAGACTCAAGGAAGATGCTGTAGAATATCTTGCTGAAATTAATAAACGCCTTGCTGCTATTTCTCTCAATAAAGAATCGAAAACGGCAACGGAAGGGCAAGAAGCAAAAGGAATCAACATGATTAAGAAGGATTCCTTGCCACAAACATCTACTTCAAAAATTCTTCCAATAGCTCAATGGATAGACATGAAGAATCATTATTCTCAGCCATCTCCTTCTGACTTAGGATGGGATGATCTACATCATGAGAAATGGACATATGATGGTTAA

mRNA sequence

ATGGAAAGGAGATTGAAACCAGTTTACAATCAAATCAATGTTATTTCCGACGATAAAGAACGTTTCAGAGAACATTACAGTATATATATCGATCAATGGATCAAGGCTCCTGCTGAAACAAGGAAGCCATTTCTAACCATGCCTGACTTCGTTAAAGGCATGTTAAAGGTGGAAAGAGCCAAAAATGAAGCTCTTGTCAAGAAACTACAAGCAGATGGCCTAGTTGCCATGATTAAGGGATCAACTATCTGGGTTACTACCAGTGGAAAAGAAGTAGCTTCAAATTATCCGCCTGAAGAAGAAGCTTATTTCCCTCATTCCGCCATTCCTGCTATCAAGATGGTTTCATCTCCTTACAAAACAATCAATGAAGATAAAGTTCAAACGGCAGTAGAGCGAATTGAAAATCCGGGACTTCCTTTAAAAAATAAGAATCCCGAGATCCCTCAAATCAACCCAAATCAACCGATCTTTCAGCCAAACAGCTTTAATATCGGCAGACTCAAGGAAGATGCTGTAGAATATCTTGCTGAAATTAATAAACGCCTTGCTGCTATTTCTCTCAATAAAGAATCGAAAACGGCAACGGAAGGGCAAGAAGCAAAAGGAATCAACATGATTAAGAAGGATTCCTTGCCACAAACATCTACTTCAAAAATTCTTCCAATAGCTCAATGGATAGACATGAAGAATCATTATTCTCAGCCATCTCCTTCTGACTTAGGATGGGATGATCTACATCATGAGAAATGGACATATGATGGTTAA

Coding sequence (CDS)

ATGGAAAGGAGATTGAAACCAGTTTACAATCAAATCAATGTTATTTCCGACGATAAAGAACGTTTCAGAGAACATTACAGTATATATATCGATCAATGGATCAAGGCTCCTGCTGAAACAAGGAAGCCATTTCTAACCATGCCTGACTTCGTTAAAGGCATGTTAAAGGTGGAAAGAGCCAAAAATGAAGCTCTTGTCAAGAAACTACAAGCAGATGGCCTAGTTGCCATGATTAAGGGATCAACTATCTGGGTTACTACCAGTGGAAAAGAAGTAGCTTCAAATTATCCGCCTGAAGAAGAAGCTTATTTCCCTCATTCCGCCATTCCTGCTATCAAGATGGTTTCATCTCCTTACAAAACAATCAATGAAGATAAAGTTCAAACGGCAGTAGAGCGAATTGAAAATCCGGGACTTCCTTTAAAAAATAAGAATCCCGAGATCCCTCAAATCAACCCAAATCAACCGATCTTTCAGCCAAACAGCTTTAATATCGGCAGACTCAAGGAAGATGCTGTAGAATATCTTGCTGAAATTAATAAACGCCTTGCTGCTATTTCTCTCAATAAAGAATCGAAAACGGCAACGGAAGGGCAAGAAGCAAAAGGAATCAACATGATTAAGAAGGATTCCTTGCCACAAACATCTACTTCAAAAATTCTTCCAATAGCTCAATGGATAGACATGAAGAATCATTATTCTCAGCCATCTCCTTCTGACTTAGGATGGGATGATCTACATCATGAGAAATGGACATATGATGGTTAA

Protein sequence

MERRLKPVYNQINVISDDKERFREHYSIYIDQWIKAPAETRKPFLTMPDFVKGMLKVERAKNEALVKKLQADGLVAMIKGSTIWVTTSGKEVASNYPPEEEAYFPHSAIPAIKMVSSPYKTINEDKVQTAVERIENPGLPLKNKNPEIPQINPNQPIFQPNSFNIGRLKEDAVEYLAEINKRLAAISLNKESKTATEGQEAKGINMIKKDSLPQTSTSKILPIAQWIDMKNHYSQPSPSDLGWDDLHHEKWTYDG*
Homology
[Close]
BLAST of MELO3C022948 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 1   MERRLKPVYNQINVISDDKERFREHYSIYIDQWIKAPAETRKPFLTMPDFVKGMLKVERA 60
           MERR +P +NQINVISDD+ERFREHY  Y++ W KAPAET+KPFL M  FV         
Sbjct: 332 MERRSEPAFNQINVISDDRERFREHYIKYVETWTKAPAETKKPFLYMSAFV--------- 391

Query: 61  KNEALVKKLQADGLVAMIKGS 82
           +NEA     Q   +V MIK +
Sbjct: 392 ENEAEASAKQEAKMVNMIKNN 403

[Close]
BLAST of MELO3C022948 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 8.4e+00
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1 

Query: 167 RLKEDAVEYL-------AEINKRLAAISLNKESKT-ATEGQEAKGINMIKKDS--LPQTS 226
           R +E  ++Y+       AE  K    +S   E++  A+  QEAK +NMIK +    PQ S
Sbjct: 352 RFREHYIKYVETWTKAPAETKKPFLYMSAFVENEAEASAKQEAKMVNMIKNNHNPSPQAS 411

[Close]
BLAST of MELO3C022948 vs. NCBI nr
Match: gi|659128065|ref|XP_008464028.1| (PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-24
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 197 EGQEAKGINMIKKDSLPQTSTSKILPIAQWIDMKNHYSQPSPSDLGWDDLHHEKWTYDG 256
           EGQE KGINMIKKDSLPQTSTSKILP+AQWIDMKNHY QPSP DLGWDDLHHEK TYDG
Sbjct: 2   EGQEGKGINMIKKDSLPQTSTSKILPVAQWIDMKNHYPQPSPPDLGWDDLHHEKRTYDG 60

[Close]
BLAST of MELO3C022948 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-13
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 1   MERRLKPVYNQINVISDDKERFREHYSIYIDQWIKAPAETRKPFLTMPDFVKGMLKVERA 60
           MERR +P +NQINVISDD+ERFREHY  Y++ W KAPAET+KPFL M  FV         
Sbjct: 332 MERRSEPAFNQINVISDDRERFREHYIKYVETWTKAPAETKKPFLYMSAFV--------- 391

Query: 61  KNEALVKKLQADGLVAMIKGS 82
           +NEA     Q   +V MIK +
Sbjct: 392 ENEAEASAKQEAKMVNMIKNN 403

[Close]
BLAST of MELO3C022948 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 39.3 bits (90), Expect = 1.2e+01
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1 

Query: 167 RLKEDAVEYL-------AEINKRLAAISLNKESKT-ATEGQEAKGINMIKKDS--LPQTS 226
           R +E  ++Y+       AE  K    +S   E++  A+  QEAK +NMIK +    PQ S
Sbjct: 352 RFREHYIKYVETWTKAPAETKKPFLYMSAFVENEAEASAKQEAKMVNMIKNNHNPSPQAS 411

The following BLAST results are available for this feature:
BLAST of MELO3C022948 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M024_CUCSA3.0e-1354.32Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1[more]
A0A0A0M024_CUCSA8.4e+0041.43Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1[more]
BLAST of MELO3C022948 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128065|ref|XP_008464028.1|5.4e-2491.53PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo][more]
gi|700210425|gb|KGN65521.1|4.3e-1354.32hypothetical protein Csa_1G434190 [Cucumis sativus][more]
gi|700210425|gb|KGN65521.1|1.2e+0141.43hypothetical protein Csa_1G434190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022948T1MELO3C022948T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022948Watermelon (Charleston Gray)mewcgB046
MELO3C022948Watermelon (97103) v1mewmB080
MELO3C022948Bottle gourd (USVL1VR-Ls)lsimeB082
MELO3C022948Watermelon (97103) v2mewmbB050
MELO3C022948Wax gourdmewgoB088