MELO3C022944 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022944
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP synthase subunit c, chloroplastic
Locationchr10 : 24957873 .. 24958214 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGAGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGATGTACAAAGTGTCATTCTCTCCCAAATATGCATACTTTAGGTGGTTGGGTAAAGGCTTGAGCTCTATTTCTGGTGGTTCTTCGATTGATGACTTTATCTTCTTCTTGCCTTTGGTTTTCAGGTCCAAAGACTCAAACTTTGTTTTGCCCAACATGACGTTTACTTCTTCCAGTATATAA

mRNA sequence

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGAGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGATGTACAAAGTGTCATTCTCTCCCAAATATGCATACTTTAGGTGGTTGGGTAAAGGCTTGAGCTCTATTTCTGGTGGTTCTTCGATTGATGACTTTATCTTCTTCTTGCCTTTGGTTTTCAGGTCCAAAGACTCAAACTTTGTTTTGCCCAACATGACGTTTACTTCTTCCAGTATATAA

Coding sequence (CDS)

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGAGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGATGTACAAAGTGTCATTCTCTCCCAAATATGCATACTTTAGGTGGTTGGGTAAAGGCTTGAGCTCTATTTCTGGTGGTTCTTCGATTGATGACTTTATCTTCTTCTTGCCTTTGGTTTTCAGGTCCAAAGACTCAAACTTTGTTTTGCCCAACATGACGTTTACTTCTTCCAGTATATAA

Protein sequence

MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLMYKVSFSPKYAYFRWLGKGLSSISGGSSIDDFIFFLPLVFRSKDSNFVLPNMTFTSSSI*
Homology
[Close]
BLAST of MELO3C022944 vs. Swiss-Prot
Match: ATPH_MARPO (ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/55 (96.36%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. Swiss-Prot
Match: ATPH_PELHO (ATP synthase subunit c, chloroplastic OS=Pelargonium hortorum GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/55 (96.36%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/55 (96.36%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/55 (96.36%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. Swiss-Prot
Match: ATPH_PIPCE (ATP synthase subunit c, chloroplastic OS=Piper cenocladum GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/55 (96.36%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. TrEMBL
Match: A0A0K1ZYL2_9ASTR (ATP synthase subunit c, chloroplastic OS=Verreauxia reinwardtii GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. TrEMBL
Match: U6A2W9_COSPU (ATP synthase CF0 subunit III OS=Costus pulverulentus GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. TrEMBL
Match: A0A0U2SNX2_9MYRT (ATP synthase subunit c, chloroplastic OS=Oenothera grandiflora GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. TrEMBL
Match: A0A0A0UQN8_9ASPA (ATP synthase CF0 subunit III OS=Corallorhiza wisteriana GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. TrEMBL
Match: A0A060DEF7_9BRYO (ATP synthase subunit c, chloroplastic OS=Tetraphis pellucida GN=atpH PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. TAIR10
Match: ATCG00140.1 (ATCG00140.1 ATP synthase subunit C family protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.4e-22
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPL+SAASVIAAGLAVGLASIGPG+GQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. NCBI nr
Match: gi|816379119|gb|AKF01755.1| (ATP synthase CF0 subunit III (chloroplast) [Iriartea deltoidea])

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. NCBI nr
Match: gi|11466684|ref|NP_039280.1| (ATP synthase CF0 C subunit (chloroplast) [Marchantia polymorpha])

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. NCBI nr
Match: gi|722491647|ref|YP_009109436.1| (ATP synthase III subunit (chloroplast) [Sanionia uncinata])

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. NCBI nr
Match: gi|725676302|ref|YP_009109195.1| (ATP synthase CF0 subunit III (plastid) [Corallorhiza wisteriana])

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

[Close]
BLAST of MELO3C022944 vs. NCBI nr
Match: gi|927371887|ref|YP_009164185.1| (ATP synthase CF0 subunit III (chloroplast) [Viscum minimum])

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-19
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAASQAVEGIARQPEAEGKIRGTLLM 56
          MNPLISAASVIAAGLAVGLASIGPG+GQGTAA QAVEGIARQPEAEGKIRGTLL+
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLL 55

The following BLAST results are available for this feature:
BLAST of MELO3C022944 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPH_MARPO2.5e-2196.36ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha GN=atpH PE=3 SV=1[more]
ATPH_PELHO2.5e-2196.36ATP synthase subunit c, chloroplastic OS=Pelargonium hortorum GN=atpH PE=3 SV=1[more]
ATPH_TRACE2.5e-2196.36ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1[more]
ATPH_SOLTU2.5e-2196.36ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1[more]
ATPH_PIPCE2.5e-2196.36ATP synthase subunit c, chloroplastic OS=Piper cenocladum GN=atpH PE=3 SV=1[more]
BLAST of MELO3C022944 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K1ZYL2_9ASTR2.8e-1996.36ATP synthase subunit c, chloroplastic OS=Verreauxia reinwardtii GN=atpH PE=3 SV=... [more]
U6A2W9_COSPU2.8e-1996.36ATP synthase CF0 subunit III OS=Costus pulverulentus GN=atpH PE=3 SV=1[more]
A0A0U2SNX2_9MYRT2.8e-1996.36ATP synthase subunit c, chloroplastic OS=Oenothera grandiflora GN=atpH PE=3 SV=1[more]
A0A0A0UQN8_9ASPA2.8e-1996.36ATP synthase CF0 subunit III OS=Corallorhiza wisteriana GN=atpH PE=3 SV=1[more]
A0A060DEF7_9BRYO2.8e-1996.36ATP synthase subunit c, chloroplastic OS=Tetraphis pellucida GN=atpH PE=3 SV=1[more]
BLAST of MELO3C022944 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00140.12.4e-2292.73ATCG00140.1 ATP synthase subunit C family protein[more]
BLAST of MELO3C022944 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|816379119|gb|AKF01755.1|4.0e-1996.36ATP synthase CF0 subunit III (chloroplast) [Iriartea deltoidea][more]
gi|11466684|ref|NP_039280.1|4.0e-1996.36ATP synthase CF0 C subunit (chloroplast) [Marchantia polymorpha][more]
gi|722491647|ref|YP_009109436.1|4.0e-1996.36ATP synthase III subunit (chloroplast) [Sanionia uncinata][more]
gi|725676302|ref|YP_009109195.1|4.0e-1996.36ATP synthase CF0 subunit III (plastid) [Corallorhiza wisteriana][more]
gi|927371887|ref|YP_009164185.1|5.2e-1994.55ATP synthase CF0 subunit III (chloroplast) [Viscum minimum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR002379ATPase_proteolipid_c-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0015991ATP hydrolysis coupled proton transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0042170 plastid membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
molecular_function GO:0008289 lipid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022944T1MELO3C022944T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATPase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 12..31
score: 4.8E-10coord: 33..48
score: 4.8
IPR000454ATPase, F0 complex, subunit CGENE3DG3DSA:1.20.20.10coord: 8..55
score: 7.8
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 11..55
score: 1.9
IPR002379V-ATPase proteolipid subunit C-like domainunknownSSF81333F1F0 ATP synthase subunit Ccoord: 3..56
score: 3.92
NoneNo IPR availableHAMAPMF_01396ATP_synth_c_bactcoord: 9..77
score: 11
NoneNo IPR availablePANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..78
score: 1.3
NoneNo IPR availablePANTHERPTHR10031:SF6ATP SYNTHASE SUBUNIT C, CHLOROPLASTICcoord: 1..78
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022944Cucumber (Chinese Long) v3cucmeB388
MELO3C022944Watermelon (97103) v2mewmbB050
MELO3C022944Watermelon (97103) v2mewmbB052
MELO3C022944Wax gourdmewgoB088
MELO3C022944Cucumber (Gy14) v1cgymeB330
MELO3C022944Cucurbita maxima (Rimu)cmameB646
MELO3C022944Cucurbita moschata (Rifu)cmomeB639
MELO3C022944Wild cucumber (PI 183967)cpimeB376
MELO3C022944Cucumber (Chinese Long) v2cumeB381
MELO3C022944Watermelon (Charleston Gray)mewcgB046
MELO3C022944Watermelon (Charleston Gray)mewcgB050
MELO3C022944Watermelon (97103) v1mewmB073
MELO3C022944Watermelon (97103) v1mewmB080
MELO3C022944Cucurbita pepo (Zucchini)cpemeB371
MELO3C022944Cucumber (Gy14) v2cgybmeB325
MELO3C022944Bottle gourd (USVL1VR-Ls)lsimeB082