MELO3C022935 (gene) Melon (DHL92) v3.5.1

NameMELO3C022935
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptiontapetum determinant 1
Locationchr10 : 24820630 .. 24821115 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATGTTTGGAAATTATATGAATTAGGTGGAGCATTTGAAAAGAATTGCGATGGAAATTCGGTAGCAATAAGCCAAGGAGAAGGGGATCGAATGTTCAATGGAATCCCAACGTATAAGGTGCAGATAACAAATCAATGTTTTGGCAATTGCACTATATACGATCTGCATCTCAAATGTGGATCCTTCAACTCTTCTAGCTCAATAAATCCTCGCATCTTCAAGAGACTCGCGGTCGACGATTGTCTTGTCAACAATGGATCACCAATTAACTATGGGGAAACTCTTTCTTTTCAATATGCTACTACGTATATGTTTTCTCTTTCCATTTCCTCTTTTAAATGTTAGATGTTGAAAATTATTGCTAATTTAAATTTGATGTGATTTTAATTCTTAGTGAGAAAATATAGGATGAAGGCAGAATTTTAAGATGAGTGGTTTGGTGGGTTTTTTCACTTCAAATGTTTTATTAATGGACAATTGGATA

mRNA sequence

TCAATGTTTGGAAATTATATGAATTAGGTGGAGCATTTGAAAAGAATTGCGATGGAAATTCGGTAGCAATAAGCCAAGGAGAAGGGGATCGAATGTTCAATGGAATCCCAACGTATAAGGTGCAGATAACAAATCAATGTTTTGGCAATTGCACTATATACGATCTGCATCTCAAATGTGGATCCTTCAACTCTTCTAGCTCAATAAATCCTCGCATCTTCAAGAGACTCGCGGTCGACGATTGTCTTGTCAACAATGGATCACCAATTAACTATGGGGAAACTCTTTCTTTTCAATATGCTACTACGTATATGTTTTCTCTTTCCATTTCCTCTTTTAAATGTTAGATGTTGAAAATTATTGCTAATTTAAATTTGATGTGATTTTAATTCTTAGTGAGAAAATATAGGATGAAGGCAGAATTTTAAGATGAGTGGTTTGGTGGGTTTTTTCACTTCAAATGTTTTATTAATGGACAATTGGATA

Coding sequence (CDS)

ATGTTCAATGGAATCCCAACGTATAAGGTGCAGATAACAAATCAATGTTTTGGCAATTGCACTATATACGATCTGCATCTCAAATGTGGATCCTTCAACTCTTCTAGCTCAATAAATCCTCGCATCTTCAAGAGACTCGCGGTCGACGATTGTCTTGTCAACAATGGATCACCAATTAACTATGGGGAAACTCTTTCTTTTCAATATGCTACTACGTATATGTTTTCTCTTTCCATTTCCTCTTTTAAATGTTAG

Protein sequence

MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFSLSISSFKC*
BLAST of MELO3C022935 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-22
Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 1

Query: 1   MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPIN 60
           M NGIP Y V+ITNQC   C I  +H+ CG F+S+  INPR+FKR+  DDCLVNNG P+ 
Sbjct: 92  MPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLP 151

Query: 61  YGETLSFQYATTYMFSLSISSFKC 85
           +G TLSF YA T+ + LS++   C
Sbjct: 152 FGSTLSFHYANTFPYHLSVAFVTC 175

BLAST of MELO3C022935 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-20
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYG 62
           +G+P+Y V+I N C  +C I ++H+ CG F+S   +NPR+F+RL  DDCLVN+G P+  G
Sbjct: 97  SGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPG 156

Query: 63  ETLSFQYATTYMFSLSISSFKC 85
           ++LSFQYA ++ + LS++S  C
Sbjct: 157 QSLSFQYANSFSYPLSVASVSC 178

BLAST of MELO3C022935 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-16
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGN------CTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNG 62
           +G+P Y V + N+C G       C I  +H++CG F+S S ++PR+F+RL  DDCL+N+G
Sbjct: 132 SGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVFRRLGHDDCLLNDG 191

Query: 63  SPINYGETLSFQYATTYMFSLSISSFKC 85
            P+  GET+SF+Y  ++ + LS+S   C
Sbjct: 192 RPLLAGETVSFEYTNSFPYKLSVSVATC 219

BLAST of MELO3C022935 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.8e-15
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYG 62
           +GIPTY V+I N C   CT+YD+H+ CG F S+  ++P  F+R+  +DCLV  G  +   
Sbjct: 88  SGIPTYSVEIINVCTA-CTVYDVHISCGEFASAELVDPSQFQRIGFNDCLVKGGGRLGPS 147

Query: 63  ETLSFQYATTYMFSLSISSFKC 85
           E +SFQY+ ++ + L++++  C
Sbjct: 148 EAVSFQYSNSFAYPLAVANVAC 168

BLAST of MELO3C022935 vs. TrEMBL
Match: V4MEA8_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027160mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-22
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1

Query: 1   MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPIN 60
           M NGIP Y+V+ITNQC   C I  +H+ CG F+S+  INPR+FKR+  DDCLVNNG P+ 
Sbjct: 31  MPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLFKRIHYDDCLVNNGKPLP 90

Query: 61  YGETLSFQYATTYMFSLSISSFKC 85
           YG TLSFQYA T+ + LS+S   C
Sbjct: 91  YGSTLSFQYANTFPYPLSVSFVTC 114

BLAST of MELO3C022935 vs. TrEMBL
Match: A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-22
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1

Query: 4   GIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYGE 63
           GIPTY V++ N C   C IY +H KCG F+S+  INPR+FKRL  DDCLVN+G P+ YG 
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 64  TLSFQYATTYMFSLSISSFKC 85
           TLSFQYA TY + LS+SS  C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

BLAST of MELO3C022935 vs. TrEMBL
Match: A0A059A5T0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02699 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYG 62
           +GIPTY V+I N C   C I  +HL CG F+S+  INPR+FKRL  DDCLVN+G P+  G
Sbjct: 96  SGIPTYTVEIMNACVTGCDISRIHLSCGWFSSARLINPRVFKRLRYDDCLVNDGEPLANG 155

Query: 63  ETLSFQYATTYMFSLSISSFKC 85
           +TLSFQYA TY + LS+SS  C
Sbjct: 156 DTLSFQYANTYSYPLSVSSVSC 177

BLAST of MELO3C022935 vs. TrEMBL
Match: A0A078H986_BRANA (BnaA01g14340D protein OS=Brassica napus GN=BnaA01g14340D PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1

Query: 1   MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPIN 60
           M NGIP Y V+ITNQC   C I  +H+ CG F+S+  +NPR+FKR+  DDCLVNNG P+ 
Sbjct: 88  MPNGIPGYTVEITNQCMSGCNISRIHVSCGWFSSAKLVNPRVFKRIHYDDCLVNNGKPLP 147

Query: 61  YGETLSFQYATTYMFSLSISSFKC 85
           YG TLSF YA T+ + L+++   C
Sbjct: 148 YGSTLSFHYANTFPYRLAVAFVTC 171

BLAST of MELO3C022935 vs. TrEMBL
Match: M4DBJ2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1

Query: 1   MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPIN 60
           M NGIP Y V+ITNQC   C I  +H+ CG F+S+  +NPR+FKR+  DDCLVNNG P+ 
Sbjct: 87  MPNGIPGYTVEITNQCMSGCNISRIHVSCGWFSSAKLVNPRVFKRIHYDDCLVNNGKPLP 146

Query: 61  YGETLSFQYATTYMFSLSISSFKC 85
           YG TLSF YA T+ + L+++   C
Sbjct: 147 YGSTLSFHYANTFPYRLAVAFVTC 170

BLAST of MELO3C022935 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-23
Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 1

Query: 1   MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPIN 60
           M NGIP Y V+ITNQC   C I  +H+ CG F+S+  INPR+FKR+  DDCLVNNG P+ 
Sbjct: 92  MPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLP 151

Query: 61  YGETLSFQYATTYMFSLSISSFKC 85
           +G TLSF YA T+ + LS++   C
Sbjct: 152 FGSTLSFHYANTFPYHLSVAFVTC 175

BLAST of MELO3C022935 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-21
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYG 62
           +G+P+Y V+I N C  +C I ++H+ CG F+S   +NPR+F+RL  DDCLVN+G P+  G
Sbjct: 97  SGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPG 156

Query: 63  ETLSFQYATTYMFSLSISSFKC 85
           ++LSFQYA ++ + LS++S  C
Sbjct: 157 QSLSFQYANSFSYPLSVASVSC 178

BLAST of MELO3C022935 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 50.1 bits (118), Expect = 8.0e-07
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1

Query: 8   YKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLA--VDDCLVNNGSPINYGETL 67
           ++V++ N+C   C I +L LKC  F   S ++P   + L+    +C+VN+G P++  +TL
Sbjct: 48  FRVEVMNKC-PMCPIINLRLKCQGF-PQSLVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 68  SFQYATTYMFSLS--ISSFKC 85
           SF Y+ T+ F+L     SF+C
Sbjct: 108 SFNYSNTHQFALRPLSWSFQC 126

BLAST of MELO3C022935 vs. NCBI nr
Match: gi|729326719|ref|XP_010535235.1| (PREDICTED: uncharacterized protein At1g05835-like [Tarenaya hassleriana])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 47/82 (57.32%), Postives = 66/82 (80.49%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYG 62
           NGIPT++V+ITNQC   C+I D+HL CG F+S++ I P +FKRL+ +DCLVN G P+ +G
Sbjct: 47  NGIPTFRVEITNQCVTGCSISDIHLNCGWFSSATLIRPNVFKRLSYNDCLVNGGQPLEFG 106

Query: 63  ETLSFQYATTYMFSLSISSFKC 85
            T+SFQYAT+++F LS+SS +C
Sbjct: 107 HTVSFQYATSFLFPLSVSSVQC 128

BLAST of MELO3C022935 vs. NCBI nr
Match: gi|1000984729|ref|XP_015579392.1| (PREDICTED: protein TAPETUM DETERMINANT 1-like [Ricinus communis])

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-22
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1

Query: 3   NGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYG 62
           NGIPTY VQITN C   C I  +H++CG F+S+  INP+IFKRL  DDCLVNNG P+ YG
Sbjct: 95  NGIPTYTVQITNICVTGCDISGIHIRCGWFSSARLINPKIFKRLRYDDCLVNNGKPLIYG 154

Query: 63  ETLSFQYATTYMFSLSISSFKC 85
            T+SF+Y+ TY++ LS+SS  C
Sbjct: 155 GTISFEYSNTYLYPLSVSSVLC 176

BLAST of MELO3C022935 vs. NCBI nr
Match: gi|567219464|ref|XP_006413361.1| (hypothetical protein EUTSA_v10027160mg, partial [Eutrema salsugineum])

HSP 1 Score: 111.3 bits (277), Expect = 8.3e-22
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1

Query: 1   MFNGIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPIN 60
           M NGIP Y+V+ITNQC   C I  +H+ CG F+S+  INPR+FKR+  DDCLVNNG P+ 
Sbjct: 31  MPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLFKRIHYDDCLVNNGKPLP 90

Query: 61  YGETLSFQYATTYMFSLSISSFKC 85
           YG TLSFQYA T+ + LS+S   C
Sbjct: 91  YGSTLSFQYANTFPYPLSVSFVTC 114

BLAST of MELO3C022935 vs. NCBI nr
Match: gi|449472127|ref|XP_004153503.1| (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1

Query: 4   GIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYGE 63
           GIPTY V++ N C   C IY +H KCG F+S+  INPR+FKRL  DDCLVN+G P+ YG 
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 64  TLSFQYATTYMFSLSISSFKC 85
           TLSFQYA TY + LS+SS  C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

BLAST of MELO3C022935 vs. NCBI nr
Match: gi|659067542|ref|XP_008439976.1| (PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1

Query: 4   GIPTYKVQITNQCFGNCTIYDLHLKCGSFNSSSSINPRIFKRLAVDDCLVNNGSPINYGE 63
           GIPTY V++ N C   C IY +H KCG F+S+  INPR+FKRL  DDCLVN+G P+ YG 
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 64  TLSFQYATTYMFSLSISSFKC 85
           TLSFQYA TY + LS+SS  C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TPD1_ARATH2.2e-2254.76Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1[more]
TDL1_ARATH4.6e-2047.56TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1[more]
TDL1A_ORYSJ1.4e-1642.05TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1[more]
TDL1B_ORYSJ5.8e-1540.24TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1[more]
Match NameE-valueIdentityDescription
V4MEA8_EUTSA5.8e-2258.33Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027160mg P... [more]
A0A0A0LUG9_CUCSA7.6e-2260.49Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1[more]
A0A059A5T0_EUCGR1.4e-2058.54Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02699 PE=4 SV=1[more]
A0A078H986_BRANA2.4e-2053.57BnaA01g14340D protein OS=Brassica napus GN=BnaA01g14340D PE=4 SV=1[more]
M4DBJ2_BRARP2.4e-2053.57Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24972.11.2e-2354.76 tapetum determinant 1[more]
AT1G32583.12.6e-2147.56 FUNCTIONS IN: molecular_function unknown[more]
AT1G05835.18.0e-0735.80 PHD finger protein[more]
Match NameE-valueIdentityDescription
gi|729326719|ref|XP_010535235.1|1.3e-2257.32PREDICTED: uncharacterized protein At1g05835-like [Tarenaya hassleriana][more]
gi|1000984729|ref|XP_015579392.1|6.4e-2259.76PREDICTED: protein TAPETUM DETERMINANT 1-like [Ricinus communis][more]
gi|567219464|ref|XP_006413361.1|8.3e-2258.33hypothetical protein EUTSA_v10027160mg, partial [Eutrema salsugineum][more]
gi|449472127|ref|XP_004153503.1|1.1e-2160.49PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus][more]
gi|659067542|ref|XP_008439976.1|1.1e-2160.49PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022935T1MELO3C022935T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33184FAMILY NOT NAMEDcoord: 3..84
score: 8.4
NoneNo IPR availablePANTHERPTHR33184:SF13SUBFAMILY NOT NAMEDcoord: 3..84
score: 8.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022935Bhi07G000061Wax gourdmewgoB088
The following gene(s) are paralogous to this gene:

None