MELO3C022915 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022915
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TOX high mobility group box family member 4-A, putative isoform 4
Location	chr10 : 24205732 .. 24205971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCCACCACATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTATTCTACTGCAGGCAGCACATGACGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCTGAGGAGTATTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATATCAATCATACTATGTACTAG

mRNA sequence

ATGACATTCCACCACATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTATTCTACTGCAGGCAGCACATGACGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCTGAGGAGTATTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATATCAATCATACTATGTACTAG

Coding sequence (CDS)

ATGACATTCCACCACATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTATTCTACTGCAGGCAGCACATGACGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCTGAGGAGTATTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATATCAATCATACTATGTACTAG

Protein sequence

MTFHHMEANEESIKNKEKVKSLLILLQAAHDERDEARDQLQKETMCAEEYWNQHEKWWSLSSYYDIVKGEGNNINHTMY*

Homology

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BLAST of MELO3C022915 vs. TrEMBL
Match: A0A0A0KHV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303220 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-09
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 6  MEANEESIKNKEKVKSLLILLQAAHDERDEARDQLQK 43
          MEANEES+KNKEKVKSLL+LLQAA++ERDEARDQLQK
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

[Close]

BLAST of MELO3C022915 vs. NCBI nr
Match: gi|778714527|ref|XP_011657251.1| (PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 6  MEANEESIKNKEKVKSLLILLQAAHDERDEARDQLQK 43
          MEANEES+KNKEKVKSLL+LLQAA++ERDEARDQLQK
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

[Close]

BLAST of MELO3C022915 vs. NCBI nr
Match: gi|659095048|ref|XP_008448366.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 6  MEANEESIKNKEKVKSLLILLQAAHDERDEARDQLQK 43
          MEA+EESIKNKEKVKSLL+LLQAA++ERDEARDQLQK
Sbjct: 33 MEASEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

The following BLAST results are available for this feature:

BLAST of MELO3C022915 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHV7_CUCSA	4.1e-09	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303220 PE=4 SV=1	[more]

BLAST of MELO3C022915 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778714527\|ref\|XP_011657251.1\|	5.8e-09	89.19	PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus]	[more]
gi\|659095048\|ref\|XP_008448366.1\|	1.7e-08	89.19	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022915T1	MELO3C022915T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 5..61 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 19..39 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022915	Cucurbita pepo (Zucchini)	cpemeB371
MELO3C022915	Bottle gourd (USVL1VR-Ls)	lsimeB082
MELO3C022915	Cucumber (Gy14) v2	cgybmeB323
MELO3C022915	Silver-seed gourd	carmeB0281
MELO3C022915	Cucumber (Chinese Long) v3	cucmeB384
MELO3C022915	Watermelon (97103) v2	mewmbB050
MELO3C022915	Wax gourd	mewgoB065
MELO3C022915	Wax gourd	mewgoB088
MELO3C022915	Cucumber (Gy14) v1	cgymeB339
MELO3C022915	Cucurbita maxima (Rimu)	cmameB646
MELO3C022915	Cucurbita moschata (Rifu)	cmomeB639
MELO3C022915	Wild cucumber (PI 183967)	cpimeB374
MELO3C022915	Cucumber (Chinese Long) v2	cumeB380
MELO3C022915	Watermelon (Charleston Gray)	mewcgB046
MELO3C022915	Watermelon (97103) v1	mewmB080