MELO3C022876 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022876
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Lipoyl synthase
Location	chr10 : 23287673 .. 23287882 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCCAGTATATAGAAAAGGACAAGGGCAAGGAAAAGGCACATGAAGGGCACTGTGAGGGGTTTAAGAAAGAAGTAGAAAACCTGATTCCCTTGGAGGATGAAGCGCCAAGACCAAAGAAAAAGAGAAAGGTCACAATGAAAAAGAAGACGTTGAAGGCACAATTTGAAAAGAGGCAAGCTGAGAAGGCGAAAAGAAAGCCTTAA

mRNA sequence

ATGGTGGCCCAGTATATAGAAAAGGACAAGGGCAAGGAAAAGGCACATGAAGGGCACTGTGAGGGGTTTAAGAAAGAAGTAGAAAACCTGATTCCCTTGGAGGATGAAGCGCCAAGACCAAAGAAAAAGAGAAAGGTCACAATGAAAAAGAAGACGTTGAAGGCACAATTTGAAAAGAGGCAAGCTGAGAAGGCGAAAAGAAAGCCTTAA

Coding sequence (CDS)

ATGGTGGCCCAGTATATAGAAAAGGACAAGGGCAAGGAAAAGGCACATGAAGGGCACTGTGAGGGGTTTAAGAAAGAAGTAGAAAACCTGATTCCCTTGGAGGATGAAGCGCCAAGACCAAAGAAAAAGAGAAAGGTCACAATGAAAAAGAAGACGTTGAAGGCACAATTTGAAAAGAGGCAAGCTGAGAAGGCGAAAAGAAAGCCTTAA

Protein sequence

MVAQYIEKDKGKEKAHEGHCEGFKKEVENLIPLEDEAPRPKKKRKVTMKKKTLKAQFEKRQAEKAKRKP*

Homology

[Close]

BLAST of MELO3C022876 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.7e-07
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 7  EKDKGKEKAHEGHCEGFKKEVENLIPLEDEAPRPKKKRKVTMKKKTLKAQFEKRQAEKAK 66
          +K K ++   E  CE F++++E+L PLEDE  +P KK KVT+KK  LK QF+KR+ EK K
Sbjct: 35 KKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKK-KVTVKKSVLKKQFDKRREEKEK 94

Query: 67 RK 69
          +K
Sbjct: 95 KK 95

[Close]

BLAST of MELO3C022876 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 5.4e-11
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 2   VAQYIEKDKGKEKAHEGHCEGFKKEVENLIPLEDEAPRPKKKRKVTMKKKTLKAQFEKRQ 61
           VA   EKDK +EK  E H E F+KE++ L PLE++  RP KKR  TMKKK L+ QF KR+
Sbjct: 111 VALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPAKKRTFTMKKKALRKQFAKRR 170

Query: 62  AEKAKRKP 70
            E+ KRKP
Sbjct: 171 VEEMKRKP 178

[Close]

BLAST of MELO3C022876 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 2   VAQYIEKDKGKEKAHEGHCEGFKKEVENLIPLEDEA-PRPKKKRKVTMKKKTLKAQFEKR 61
           +A  +EK K KEK  E   + F+KE++   PLED    RP KKR VTMKKK L+ QF KR
Sbjct: 59  LALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKKRNVTMKKKVLRDQFAKR 118

Query: 62  QAEKAKRKP 70
           + EK +R P
Sbjct: 119 RKEKKRRGP 127

[Close]

BLAST of MELO3C022876 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 7  EKDKGKEKAHEGHCEGFKKEVENLIPLEDEAPRPKKKRKVTMKKKTLKAQFEKRQAEKAK 66
          +K K ++   E  CE F++++E+L PLEDE  +P KK KVT+KK  LK QF+KR+ EK K
Sbjct: 35 KKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKK-KVTVKKSVLKKQFDKRREEKEK 94

Query: 67 RK 69
          +K
Sbjct: 95 KK 95

The following BLAST results are available for this feature:

BLAST of MELO3C022876 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W9_CUCSA	9.7e-07	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1	[more]

BLAST of MELO3C022876 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090014\|ref\|XP_008445787.1\|	5.4e-11	55.88	PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo]	[more]
gi\|659083323\|ref\|XP_008442290.1\|	4.3e-08	50.72	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|700189199\|gb\|KGN44432.1\|	1.4e-06	50.00	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022876T1	MELO3C022876T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022876	Wax gourd	mewgoB088
MELO3C022876	Watermelon (Charleston Gray)	mewcgB048
MELO3C022876	Watermelon (97103) v1	mewmB075