MELO3C022856 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022856
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative reverse transcriptase
Location	chr9 : 13260215 .. 13261534 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTTGTGCTGCTAATGAGCCCTCTATCAGATTTATCCGAGAATGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTCGCAAATCCTAGGAAAAGCTCTATTTTTGTTGCAGGAGTTAATAATGAGAATGCTTCTCATCTGGCTACTTGTATGGGTTTTGTCCGTGGTAATCTCTCTGTTCGTTATCTTGGCCTTCCTCTTTTGGCGGGTCGATTACGTTCTAATGATTATGCTCCTCTGATTCAGCGTATCACTAGCAGGATTCGTTCTTGGACCGCTCGAGTTCTTTCGTTTGCAGGTAGACTGCAGCTTGTTCATTCTGTGCTTCGTAGTTTTCAAGTGTACTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCACAATGAGGTGGACAAGATTCTCAGATCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGAGGTATTAAGGTGGCTTGGGTGGATGTGTGTCTTCCCTTTGAGGAGGGCGGTCTTGGTATTCGAGATGGCCCTTCTTGGAATATTGCGAGTACTTTGAAGATCTTGTGGCTTATGTTAACAAATTCGGGGTCTCTTTGGGTGGCTTGGGTGGAAGCTTATATACTGAAAGGGAGGTCATTGTGGGATGTGGATAGTAGAGTGGGTAAATCTTGGTGTCTTCGGGCGATCTTACGTAAGCGAGAGAAGCTGAAGCATCTTGTAAGGATGAAGGTGGGAAATGGTAATAGTTTTAGAGTTTGGCTTGATCCGTGGTTGCCGGAGGGTGCCATTTTGGAGCAGGTTGGGGAGAGAGTGATGTATGATGCAGCTAGTCGGAGGAAGGCTAGACTCTCTGACTTTATTGACCCAGATGGAGAATGGCTTTGGCCTCGAGTTTCTTTGGAATTAATTGACCTATGGGAGAGGGTTCAGGAGGTCAGTCCGTGTCTTAGTGTTAGTGATAGTTGGGTATGGGTTCCTGGTCGTCGGGGTGGTTTCTCTATTGCAAGTGCATGGGAAGCTGTTCGTCCTAGGGGTGGTCGGGTTCTATGGGATGGTTTATTGTGGGGTGGGGGAAATATCCAAAAACATTTCTTCTGTGCGTGGTTGGCTATTAAAGATAGGTTGGGTACTATAGATAGATTGCATAGGTGGGATAGTTCAGTTCCGATGTTGTGCATTCTATGTCGGGGGGTGTGGAGTCTCGCGATCACTTATTCTTTTCGTGTTCGTTTAAGGGGGGGAAGGGATGTTTGGTCTAGGGTTCTTCGGATCATGGGTTCCTCTCATAGGATTGGGCATTGGAGGGTTGAGTTGTCTTGGATTTGTCATTAA

mRNA sequence

ATGATTTTTTGTGCTGCTAATGAGCCCTCTATCAGATTTATCCGAGAATGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTCGCAAATCCTAGGAAAAGCTCTATTTTTGTTGCAGGAGTTAATAATGAGAATGCTTCTCATCTGGCTACTTGTATGGGTTTTGTCCGTGGTAATCTCTCTGTTCGTTATCTTGGCCTTCCTCTTTTGGCGGGTCGATTACGTTCTAATGATTATGCTCCTCTGATTCAGCGTATCACTAGCAGGATTCGTTCTTGGACCGCTCGAGTTCTTTCGTTTGCAGGTAGACTGCAGCTTGTTCATTCTGTGCTTCGTAGTTTTCAAGTGTACTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCACAATGAGGTGGACAAGATTCTCAGATCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGAGGTATTAAGGTGGCTTGGGTGGATGTGTGTCTTCCCTTTGAGGAGGGCGGTCTTGTGGGTAAATCTTGGTGTCTTCGGGCGATCTTACGTAAGCGAGAGAAGCTGAAGCATCTTGTAAGGATGAAGGTGGGAAATGGTAATAGTTTTAGAGTTTGGCTTGATCCGTGGTTGCCGGAGGGTGCCATTTTGGAGCAGGTTGGGGAGAGAGTGATGTATGATGCAGCTAGTCGGAGGAAGGCTAGACTCTCTGACTTTATTGACCCAGATGGAGAATGGCTTTGGCCTCGAGTTTCTTTGGAATTAATTGACCTATGGGAGAGGGTTCAGGAGGTCAGTCCGTGTCTTAGTGTTAGTGATAGTTGGGTATGGGTTCCTGGTCGTCGGGGTGGTTTCTCTATTGCAAGTGCATGGGAAGCTGTTCGTCCTAGGGGTGGTCGGGTTCTATGGGATGGTTTATTGTGGGGTGGGGGAAATATCCAAAAACATTTCTTCTGTGCGTGGTTGGCTATTAAAGATAGGTTGGGTACTATAGATAGATTGCATAGGTGGGATAGTTCAGTTCCGATGTTGTGCATTCTATGTCGGGGGGTGTGGAGTCTCGCGATCACTTATTCTTTTCGTGTTCGTTTAAGGGGGGGAAGGGATGTTTGGTCTAGGGTTCTTCGGATCATGGGTTCCTCTCATAGGATTGGGCATTGGAGGGTTGAGTTGTCTTGGATTTGTCATTAA

Coding sequence (CDS)

ATGATTTTTTGTGCTGCTAATGAGCCCTCTATCAGATTTATCCGAGAATGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTCGCAAATCCTAGGAAAAGCTCTATTTTTGTTGCAGGAGTTAATAATGAGAATGCTTCTCATCTGGCTACTTGTATGGGTTTTGTCCGTGGTAATCTCTCTGTTCGTTATCTTGGCCTTCCTCTTTTGGCGGGTCGATTACGTTCTAATGATTATGCTCCTCTGATTCAGCGTATCACTAGCAGGATTCGTTCTTGGACCGCTCGAGTTCTTTCGTTTGCAGGTAGACTGCAGCTTGTTCATTCTGTGCTTCGTAGTTTTCAAGTGTACTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCACAATGAGGTGGACAAGATTCTCAGATCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGAGGTATTAAGGTGGCTTGGGTGGATGTGTGTCTTCCCTTTGAGGAGGGCGGTCTTGTGGGTAAATCTTGGTGTCTTCGGGCGATCTTACGTAAGCGAGAGAAGCTGAAGCATCTTGTAAGGATGAAGGTGGGAAATGGTAATAGTTTTAGAGTTTGGCTTGATCCGTGGTTGCCGGAGGGTGCCATTTTGGAGCAGGTTGGGGAGAGAGTGATGTATGATGCAGCTAGTCGGAGGAAGGCTAGACTCTCTGACTTTATTGACCCAGATGGAGAATGGCTTTGGCCTCGAGTTTCTTTGGAATTAATTGACCTATGGGAGAGGGTTCAGGAGGTCAGTCCGTGTCTTAGTGTTAGTGATAGTTGGGTATGGGTTCCTGGTCGTCGGGGTGGTTTCTCTATTGCAAGTGCATGGGAAGCTGTTCGTCCTAGGGGTGGTCGGGTTCTATGGGATGGTTTATTGTGGGGTGGGGGAAATATCCAAAAACATTTCTTCTGTGCGTGGTTGGCTATTAAAGATAGGTTGGGTACTATAGATAGATTGCATAGGTGGGATAGTTCAGTTCCGATGTTGTGCATTCTATGTCGGGGGGTGTGGAGTCTCGCGATCACTTATTCTTTTCGTGTTCGTTTAAGGGGGGGAAGGGATGTTTGGTCTAGGGTTCTTCGGATCATGGGTTCCTCTCATAGGATTGGGCATTGGAGGGTTGAGTTGTCTTGGATTTGTCATTAA

Protein sequence

MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLVGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRGVWSLAITYSFRVRLRGGRDVWSRVLRIMGSSHRIGHWRVELSWICH*

Homology

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BLAST of MELO3C022856 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-13
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 67  LPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPA 126
           +P+L  R+  + +  +++R++SR+  W  + LSFAGRL L  +VL S  V+  S  +LP 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 127 YVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGL 168
            + N +D++ R++LW    E +    V W  VC P +EGGL
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGL 101

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BLAST of MELO3C022856 vs. TrEMBL
Match: O81284_ARATH (AT4g02490 protein OS=Arabidopsis thaliana GN=T14P8.10 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.5e-45
Identity = 130/411 (31.63%), Postives = 195/411 (47.45%), Query Frame = 1


Query: 1   MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 60
           ++FC  +  S+  I + L  F + SGL  N +K+++ + G N E    +A  +G  +G+L
Sbjct: 249 LVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGSL 308

Query: 61  SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWAS 120
            VRYLG+PL++ +++ +DY PL+ RI SR  SWTAR LSFAGRLQL+ SV+ S   +WAS
Sbjct: 309 PVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWAS 368

Query: 121 VFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGL------------- 180
           +F+LP    ++++++  ++LW G        K++W  VC   E GGL             
Sbjct: 369 IFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNKVLA 428

Query: 181 ----------VGKSWC--LRAILRKREKLKHLVR----MKVGNGNSFRVWLDPWLPEGAI 240
                      G  W   +R + RK  KL+ + R     +VG+G + R W D W   G +
Sbjct: 429 LKLIWLLFTASGSLWVSWVRWVWRKLCKLREVARPFVICEVGSGITARFWQDNWTGHGPL 488

Query: 241 LEQVGERVMYDAASRRKARLSDFIDPDGEWLWPR-----VSLELIDLWERVQEVSPCLSV 300
           +   G            + + D I  D  W+        V L L  L   V  +  C   
Sbjct: 489 IHLTGLTGPQLVGLSITSVVRDAIRNDDWWIASSRSRNPVILLLKSLLPPVGNLVDC-EH 548

Query: 301 SDSWVWVPGRR---GGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRL 360
            DS++W  G R     FS A  W A++P    V W   +W    + KH F +W+   +RL
Sbjct: 549 DDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKHAFISWVTAWNRL 608

Query: 361 GTIDRLHRWDSSVPMLCILCRGVWSLAITYSFRVRLRGGRDVWSRVLRIMG 375
            T DRL  W   VP  C+LC  V        F  R      +W+  +R +G
Sbjct: 609 HTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRF--SSRIWTFFMRAVG 656

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BLAST of MELO3C022856 vs. TrEMBL
Match: Q9LVQ1_ARATH (Non-LTR retroelement reverse transcriptase-like OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.0e-44
Identity = 140/450 (31.11%), Postives = 195/450 (43.33%), Query Frame = 1


Query: 1   MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVN-NENASHLATCMGFVRGN 60
           MIF      S+  I E L  F + SGL  N  KS +F AG++ +E  +  A   GF  G 
Sbjct: 562 MIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSAA--YGFPAGT 621

Query: 61  LSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWA 120
             +RYLGLPL+  +LR  DY PL++++++R+RSW ++ LSFAGR QL+ SV+     +W 
Sbjct: 622 FPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWM 681

Query: 121 SVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLVGKS---WCLRA 180
           S F+LP     +++ +   +LW G  +GR   KV+WVD CLP  EGGL  +S   W    
Sbjct: 682 STFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTL 741

Query: 181 ILR-----------------KREKLKH----------------------------LVRMK 240
           +LR                 +  +L H                             ++ K
Sbjct: 742 LLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAK 801

Query: 241 VGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELI 300
           VGNG +   W D W   G +++ +G+           A+++D ID  G  L    SL   
Sbjct: 802 VGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTAD 861

Query: 301 DLWERVQEVSP--CLSVSDSWVWVPGRRG--GFSIASAWEAVRPRGGRVLWDGLLWGGGN 360
            +   +  + P   L VSDS+ W        GFS A  WE +RPR     W   +W  G 
Sbjct: 862 SILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGA 921

Query: 361 IQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRGVWSLAITYSFRVRLRG------ 389
           + KH F  W A  +RL T  RL  W       C LC          SF    R       
Sbjct: 922 VPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLC----------SFDTETRDHLLLLC 981

[Close]

BLAST of MELO3C022856 vs. TrEMBL
Match: Q0WMG9_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.0e-44
Identity = 140/450 (31.11%), Postives = 195/450 (43.33%), Query Frame = 1


Query: 1   MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVN-NENASHLATCMGFVRGN 60
           MIF      S+  I E L  F + SGL  N  KS +F AG++ +E  +  A   GF  G 
Sbjct: 562 MIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSAA--YGFPAGT 621

Query: 61  LSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWA 120
             +RYLGLPL+  +LR  DY PL++++++R+RSW ++ LSFAGR QL+ SV+     +W 
Sbjct: 622 FPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWM 681

Query: 121 SVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLVGKS---WCLRA 180
           S F+LP     +++ +   +LW G  +GR   KV+WVD CLP  EGGL  +S   W    
Sbjct: 682 STFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTL 741

Query: 181 ILR-----------------KREKLKH----------------------------LVRMK 240
           +LR                 +  +L H                             ++ K
Sbjct: 742 LLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAK 801

Query: 241 VGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELI 300
           VGNG +   W D W   G +++ +G+           A+++D ID  G  L    SL   
Sbjct: 802 VGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTAD 861

Query: 301 DLWERVQEVSP--CLSVSDSWVWVPGRRG--GFSIASAWEAVRPRGGRVLWDGLLWGGGN 360
            +   +  + P   L VSDS+ W        GFS A  WE +RPR     W   +W  G 
Sbjct: 862 SILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVWFKGA 921

Query: 361 IQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRGVWSLAITYSFRVRLRG------ 389
           + KH F  W A  +RL T  RL  W       C LC          SF    R       
Sbjct: 922 VPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLC----------SFDTETRDHLLLLC 981

[Close]

BLAST of MELO3C022856 vs. TrEMBL
Match: O80753_ARATH (T13D8.19 protein OS=Arabidopsis thaliana GN=T13D8.19 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.3e-41
Identity = 115/342 (33.63%), Postives = 161/342 (47.08%), Query Frame = 1


Query: 10  SIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPL 69
           SI  +      F   SGL  +  KS++F+AG +      + +   F  G L VRYLGLPL
Sbjct: 10  SIDGVVRVFNDFALWSGLRISMEKSTLFLAGTSATAHQTITSTYPFSVGTLPVRYLGLPL 69

Query: 70  LAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVH 129
           +  RL + DY PL+++I  RI SWTAR LSFAGRL L+ SVL S   +W + F LP    
Sbjct: 70  VNKRLSAADYLPLLEKIRQRIGSWTARFLSFAGRLNLISSVLWSICNFWMAAFRLPRGCI 129

Query: 130 NEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLVGKSWCLRAILRKREKLKHLVR 189
            EVDKI  ++LW G+E      KV+W ++C P  EGG    SW  + +L+ R     L R
Sbjct: 130 REVDKICSAFLWSGQEMKTTKAKVSWQEICKPKHEGG----SWMWKKLLKYRAVASPLCR 189

Query: 190 MKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLE 249
            +V NG +   W D W   G + + VGER   D     +  ++D       W   R    
Sbjct: 190 AEVKNGQTTSFWYDNWSDLGRLSDLVGERGAIDLGIDWQKSVAD------AWTMRRRRRH 249

Query: 250 LIDLWERVQE-----VSPCLSVSDSWVW---VPGRRGGFSIASAWEAVRPRGGRVLWDGL 309
              L  +++E     +      +D  +W       R  FS    W  +R     + W   
Sbjct: 250 RDGLLMQIEEALNKKMQNRKDEADHILWRGINDTYRPRFSTKDTWHHLRTISPTITWHKG 309

Query: 310 LWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILC 344
           +W      +  FC WLA+ +RL T DR+  W+      C LC
Sbjct: 310 VWFTHATPRQSFCVWLAVLNRLSTGDRMRMWNVGATDTCFLC 341

[Close]

BLAST of MELO3C022856 vs. TrEMBL
Match: F4J6J5_ARATH (RNA-directed DNA polymerase (Reverse transcriptase)-related protein OS=Arabidopsis thaliana GN=At3g24255 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.4e-38
Identity = 108/335 (32.24%), Postives = 157/335 (46.87%), Query Frame = 1


Query: 38  VAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARV 97
           +AGV + + + +     F  G L VRYLGLPLL  ++ ++DY PL+++I  RI  WTAR 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 98  LSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVD 157
           LSFAGRLQL+ SV+ S   +W S F LP+    E+D I  S+LW G E      KVAW D
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120

Query: 158 VCLPFEEGG----------------LVGK----SWCLRAILRKREKLKHLVRMKVGNGNS 217
           VC P +EGG                + G     SW  + IL+ R      V+  + NG++
Sbjct: 121 VCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSN 180

Query: 218 FRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERV 277
              W D W   G +++  G R   D      A +++ +      +  R      D   R+
Sbjct: 181 TSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAV------VNHRPRRHRHDTLLRI 240

Query: 278 QEV------SPCLSVSDSWVWVPGR---RGGFSIASAWEAVRPRGGRVLWDGLLWGGGNI 337
           ++V          S  D+  W       +  F+    W A R    +V W   +W     
Sbjct: 241 EDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHAT 300

Query: 338 QKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILC 344
            K+   AW+AIK+RL T DR+  W++     C+LC
Sbjct: 301 PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 329

[Close]

BLAST of MELO3C022856 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-41
Identity = 108/335 (32.24%), Postives = 155/335 (46.27%), Query Frame = 1


Query: 38  VAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARV 97
           +AGV + + + +     F  G L VRYLGLPLL  ++ ++DY PL+++I  RI  WTAR 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 98  LSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVD 157
           LSFAGRLQL+ SV+ S   +W S F LP+    E+D I  S+LW G E      KVAW D
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120

Query: 158 VCLPFEEGG----------------LVGK----SWCLRAILRKREKLKHLVRMKVGNGNS 217
           VC P +EGG                + G     SW  + IL+ R      V+  + NG++
Sbjct: 121 VCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSN 180

Query: 218 FRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERV 277
              W D W   G +++  G R   D      A +++ +      +  R      D   R+
Sbjct: 181 TSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAV------VNHRPRRHRHDTLLRI 240

Query: 278 QEV------SPCLSVSDSWVWVPGR---RGGFSIASAWEAVRPRGGRVLWDGLLWGGGNI 337
           ++V          S  D+  W       +  F+    W A R    +V W   +W     
Sbjct: 241 EDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHAT 300

Query: 338 QKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILC 344
            K+   AW+AIK+RL T DR+  W++     C+LC
Sbjct: 301 PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 329

[Close]

BLAST of MELO3C022856 vs. TAIR10
Match: AT5G16486.1 (AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-17
Identity = 56/184 (30.43%), Postives = 83/184 (45.11%), Query Frame = 1


Query: 171 SWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKAR 230
           SW  ++I + R   +  V  KVG+G +   W + W   G ++   G+     +   R A 
Sbjct: 8   SWIWKSICKLRPMAREFVVCKVGSGITCNFWSENWTNLGPLIHLTGDLGPRVSGLPRNAS 67

Query: 231 LSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSV--------SDSWVWVPGRRG---G 290
           ++D +  DG W W   S     + + ++   P  SV         D ++W  G      G
Sbjct: 68  VADALR-DGVW-WINGSRSRNPIIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVG 127

Query: 291 FSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPML 344
           FS A+ W  + P G +V W   +W  G I KH F +W+ I+ RL T D+L  W   VP L
Sbjct: 128 FSSAATWIHLNPVGEKVDWHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGLHVPSL 187

[Close]

BLAST of MELO3C022856 vs. TAIR10
Match: AT4G04650.1 (AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-12
Identity = 46/163 (28.22%), Postives = 70/163 (42.94%), Query Frame = 1


Query: 191 KVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVS--- 250
           +VG+G + + W D W+  G ++E +G            A + D +     W+    S   
Sbjct: 15  EVGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNP 74

Query: 251 --LELIDLWERVQEVSPCLSVSDSWVW-----VPGRRGGFSIASAWEAVRPRGGRVLWDG 310
             ++L +L    Q +  C    DS++W      P  R  FS    W A+ P+   V W  
Sbjct: 75  IIVQLKNLLPEAQGLLDCQH-DDSFLWKTDLHAPSNR--FSAPRTWSALHPQSHTVPWHK 134

Query: 311 LLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILC 344
            +W   ++ KH F  W+   +RL T DRL  W  S+P  C+LC
Sbjct: 135 AVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174

[Close]

BLAST of MELO3C022856 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 636.0 bits (1639), Expect = 4.5e-179
Identity = 334/444 (75.23%), Postives = 345/444 (77.70%), Query Frame = 1


Query: 1   MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 60
           MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL
Sbjct: 70  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 129

Query: 61  SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHS----------- 120
           SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHS           
Sbjct: 130 SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWAS 189

Query: 121 --------------VLRSF------------QVYWASVFVL-----------PAYVHNEV 180
                         +LRS+            +V W  V +            P++     
Sbjct: 190 VFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLGIRDGPSWNIAST 249

Query: 181 DKILRSYLWRGKEEGRGGIKVAWVDVCLP-----FEEGGLVGKSWCLRAILRKREKLKHL 240
            KIL   L        G + VAWV+  +      ++    VGKSWCLRAILRKREKLKHL
Sbjct: 250 LKILWLMLTNS-----GSLWVAWVEAYILKGRSLWDVDSRVGKSWCLRAILRKREKLKHL 309

Query: 241 VRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVS 300
           VRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVS
Sbjct: 310 VRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVS 369

Query: 301 LELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGN 360
           LELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGN
Sbjct: 370 LELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGN 429

Query: 361 IQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRGVWSLAITYSFRVRLRGGRDVWS 392
           IQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRG         F     GG DVWS
Sbjct: 430 IQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRGXVESRDHLFFSCSF-GGGDVWS 489

[Close]

BLAST of MELO3C022856 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 487.3 bits (1253), Expect = 2.6e-134
Identity = 261/398 (65.58%), Postives = 280/398 (70.35%), Query Frame = 1


Query: 10  SIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPL 69
           S +F   C ++FGELSGLFANPRKSSIF+AGVNNENAS LA CMGFVRGNL VRYLGLPL
Sbjct: 528 SFQFHHRCEKRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNLPVRYLGLPL 587

Query: 70  LAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVH 129
           L GRLRSND  PLIQRITSRIRS +ARVLSFAGRLQLV SVL S QVYWA VFVLPAYVH
Sbjct: 588 LTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVH 647

Query: 130 NEVDKILR-----------SYLWRGKEEGRGGIKVAWVDVCL-----PFEEGGLVGKSWC 189
           NE    +R             LW       G + VAWV+  +      ++    VG+SWC
Sbjct: 648 NEGGLGIRDGTAWKFASTLKILWL-MLTNSGSLWVAWVEAYVLKGRSLWDVDSRVGRSWC 707

Query: 190 LRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSD 249
           LRAILRK+EKLK  VRMKVGNGN  RVWLDPWL  GAILE+VGERV+YDAASRR+A LS+
Sbjct: 708 LRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRREASLSN 767

Query: 250 FIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRG 309
           FI PDGEWLWP                                RGGFSIASAWEA+RPRG
Sbjct: 768 FIGPDGEWLWP--------------------------------RGGFSIASAWEAIRPRG 827

Query: 310 GRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILCRGVWSLAITY 369
           GRVLWDGLLWGGGNI KH FCAWLAIKDRLGT DR HRWDSSVP+ CILC G        
Sbjct: 828 GRVLWDGLLWGGGNIPKHSFCAWLAIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHL 887

Query: 370 SFRVRLRGGRDVWSRVLRIMGSSHRIGHWRVELSWICH 392
            F      G DVWSRVLRIM SSHRIGHW VELSWICH
Sbjct: 888 FFSCPF--GGDVWSRVLRIMASSHRIGHWGVELSWICH 890

[Close]

BLAST of MELO3C022856 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 441.4 bits (1134), Expect = 1.6e-120
Identity = 225/314 (71.66%), Postives = 239/314 (76.11%), Query Frame = 1


Query: 32   RKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIR 91
            RKSSIFVAGV++E ASHLA  MGF  GNL VRYLGLPLL GRLRSND APLIQRITS IR
Sbjct: 903  RKSSIFVAGVSHEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIR 962

Query: 92   SWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGI 151
            SWTARVLSF G LQLV SVL S QVYWAS+FVLPAYVHNEVDKILRSYLWRGKEEGRGG 
Sbjct: 963  SWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGF 1022

Query: 152  KVAWVDVCLPFEEGGLVGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAI 211
            KVAWV+VCLPFEEG L                        + +G S+ +        G I
Sbjct: 1023 KVAWVEVCLPFEEGELA-----------------------IQDGPSWNI------ARGPI 1082

Query: 212  LEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWV 271
            LEQVGERV YDAASRR+ARLSDFI  DGEW WPRVS+ELIDLW+RVQ VSPCLSV D WV
Sbjct: 1083 LEQVGERVFYDAASRREARLSDFIGLDGEWQWPRVSMELIDLWDRVQAVSPCLSVRDRWV 1142

Query: 272  WVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHR 331
            W+PGR+GGFSIAS WE +RPRGGRV W  LLWGG NI KH FCAWLAIKD LGT DRLHR
Sbjct: 1143 WIPGRQGGFSIASTWETIRPRGGRVRWASLLWGGENIPKHSFCAWLAIKDMLGTRDRLHR 1187

Query: 332  WDSSVPMLCILCRG 346
            WDSSV M     RG
Sbjct: 1203 WDSSVSMCAFFVRG 1187

[Close]

BLAST of MELO3C022856 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 321.2 bits (822), Expect = 2.4e-84
Identity = 169/222 (76.13%), Postives = 183/222 (82.43%), Query Frame = 1


Query: 1   MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 60
           MIFCAA+E SIRFIR+CLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGFVRGNL
Sbjct: 126 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 185

Query: 61  SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWAS 120
           SVRYLGLPLL GRL SND APLIQRITS+IRSWTARVLSFAGR+QLV SVLRS QVYWAS
Sbjct: 186 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 245

Query: 121 VFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGL---VGKSWCLRAI 180
           VFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGL    G SW + + 
Sbjct: 246 VFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLGIRDGPSWNIAS- 305

Query: 181 LRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERV 220
                 LK L  M   +G+ +  W++ ++ +   L  V  RV
Sbjct: 306 -----TLKILWLMLTNSGSLWVAWVEAYILKRRSLWDVDSRV 341

[Close]

BLAST of MELO3C022856 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 155/266 (58.27%), Postives = 171/266 (64.29%), Query Frame = 1


Query: 1   MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNL 60
           MIFCAA+E SIRFIR+CLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGFVRGNL
Sbjct: 126 MIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNL 185

Query: 61  SVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHS----------- 120
           SVRYLGLPLL GRL SND APLIQRITS+IRSWTARVLSFAGR+QLV S           
Sbjct: 186 SVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWAS 245

Query: 121 --------------VLRSF------------QVYWASVFVL-----------PAYVHNEV 180
                         +LRS+            +V W  V +            P++     
Sbjct: 246 VFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLGIRDGPSWNIAST 305

Query: 181 DKILRSYLWRGKEEGRGGIKVAWVDVCLP-----FEEGGLVGKSWCLRAILRKREKLKHL 214
            KIL   L        G + VAWV+  +      ++    VG+SWCLRAILRKREKLKH 
Sbjct: 306 LKILWLMLTNS-----GSLWVAWVEAYILKRRSLWDVDSRVGRSWCLRAILRKREKLKHH 365

HSP 2 Score: 280.0 bits (715), Expect = 6.2e-72
Identity = 157/266 (59.02%), Postives = 172/266 (64.66%), Query Frame = 1


Query: 85  RITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWA------------------------- 144
           RITSRIRSWTARVLSFAGRLQLV SVLRS QVYWA                         
Sbjct: 3   RITSRIRSWTARVLSFAGRLQLVRSVLRSLQVYWASVFVLPAYVHNEVHKILRSYLWRGK 62

Query: 145 -----------------------SVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWV 204
                                   +   P++      KIL   L        G + VAW+
Sbjct: 63  EEGRGGIKVAWVDVCLPFEEGGLGIRDGPSWNIANTLKILWLMLTNS-----GSLWVAWM 122

Query: 205 DVCLP-----FEEGGLVGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAI 264
           +  +      ++    VG+SWC RAILRKREKLKH VRMKVGNGN  RVWLDPWL  GAI
Sbjct: 123 EAYILKGKSLWDVDSRVGRSWCFRAILRKREKLKHHVRMKVGNGNRCRVWLDPWLQGGAI 182

Query: 265 LEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWV 298
           LEQVGERV+YDAASRR+ARLSDFIDP+GEWLWPRVSLELIDLWERVQEVSPCLSVSDSWV
Sbjct: 183 LEQVGERVLYDAASRREARLSDFIDPNGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWV 242

The following BLAST results are available for this feature:

BLAST of MELO3C022856 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	1.0e-13	36.63	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of MELO3C022856 vs. TrEMBL


Match Name	E-value	Identity	Description
O81284_ARATH	4.5e-45	31.63	AT4g02490 protein OS=Arabidopsis thaliana GN=T14P8.10 PE=4 SV=1	[more]
Q9LVQ1_ARATH	5.0e-44	31.11	Non-LTR retroelement reverse transcriptase-like OS=Arabidopsis thaliana PE=4 SV=...	[more]
Q0WMG9_ARATH	5.0e-44	31.11	Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1	[more]
O80753_ARATH	2.3e-41	33.63	T13D8.19 protein OS=Arabidopsis thaliana GN=T13D8.19 PE=4 SV=1	[more]
F4J6J5_ARATH	5.4e-38	32.24	RNA-directed DNA polymerase (Reverse transcriptase)-related protein OS=Arabidops...	[more]

BLAST of MELO3C022856 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24255.1	2.7e-41	32.24	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT5G16486.1	8.0e-17	30.43	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT4G04650.1	1.6e-12	28.22	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]

BLAST of MELO3C022856 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121154\|ref\|XP_008460525.1\|	4.5e-179	75.23	PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum...	[more]
gi\|659102432\|ref\|XP_008452126.1\|	2.6e-134	65.58	PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]	[more]
gi\|659114595\|ref\|XP_008457134.1\|	1.6e-120	71.66	PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]	[more]
gi\|659126450\|ref\|XP_008463188.1\|	2.4e-84	76.13	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659126450\|ref\|XP_008463188.1\|	1.9e-65	58.27	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022856T1	MELO3C022856T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 280..344 score: 2.
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 1..102 score: 7.5
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 1..102 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022856	Wax gourd	mewgoB015
MELO3C022856	Cucumber (Gy14) v1	cgymeB075
MELO3C022856	Cucurbita maxima (Rimu)	cmameB252
MELO3C022856	Cucurbita maxima (Rimu)	cmameB636
MELO3C022856	Cucurbita moschata (Rifu)	cmomeB240
MELO3C022856	Cucurbita moschata (Rifu)	cmomeB626
MELO3C022856	Wild cucumber (PI 183967)	cpimeB343
MELO3C022856	Cucumber (Chinese Long) v2	cumeB347
MELO3C022856	Cucurbita pepo (Zucchini)	cpemeB158
MELO3C022856	Cucurbita pepo (Zucchini)	cpemeB360
MELO3C022856	Bottle gourd (USVL1VR-Ls)	lsimeB014
MELO3C022856	Cucumber (Gy14) v2	cgybmeB294
MELO3C022856	Silver-seed gourd	carmeB0531
MELO3C022856	Silver-seed gourd	carmeB0822
MELO3C022856	Cucumber (Chinese Long) v3	cucmeB351