MELO3C022836 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022836
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S4
Locationchr9 : 12729719 .. 12729868 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTATTACAGCAAAAGATGAAAAAAAATCGAGAACACTTATTTAA

mRNA sequence

ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTATTACAGCAAAAGATGAAAAAAAATCGAGAACACTTATTTAA

Coding sequence (CDS)

ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTATTACAGCAAAAGATGAAAAAAAATCGAGAACACTTATTTAA

Protein sequence

MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI*
Homology
[Close]
BLAST of MELO3C022836 vs. Swiss-Prot
Match: RR4_CUCSA (30S ribosomal protein S4, chloroplastic OS=Cucumis sativus GN=rps4 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.4e-21
Identity = 49/49 (100.00%), Postives = 47/49 (95.92%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 148

[Close]
BLAST of MELO3C022836 vs. Swiss-Prot
Match: RR4_ATRBE (30S ribosomal protein S4, chloroplastic OS=Atropa belladonna GN=rps4 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 45/49 (91.84%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIP ARQLVNHRHILVNG IVDIPSYRCKPRDIITAKDE+KSR LI
Sbjct: 100 MASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALI 148

[Close]
BLAST of MELO3C022836 vs. Swiss-Prot
Match: RR4_SOLBU (30S ribosomal protein S4, chloroplastic OS=Solanum bulbocastanum GN=rps4 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 45/49 (91.84%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIP ARQLVNHRHILVNG IVDIPSYRCKPRDIITAKDE+KSR LI
Sbjct: 100 MASTIPAARQLVNHRHILVNGHIVDIPSYRCKPRDIITAKDEQKSRALI 148

[Close]
BLAST of MELO3C022836 vs. Swiss-Prot
Match: RR4_TOBAC (30S ribosomal protein S4, chloroplastic OS=Nicotiana tabacum GN=rps4 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 45/49 (91.84%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIP ARQLVNHRHILVNG IVDIPSYRCKPRDIITAKDE+KSR LI
Sbjct: 100 MASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALI 148

[Close]
BLAST of MELO3C022836 vs. Swiss-Prot
Match: RR4_SOLTU (30S ribosomal protein S4, chloroplastic OS=Solanum tuberosum GN=rps4 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 45/49 (91.84%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIP ARQLVNHRHILVNG IVDIPSYRCKPRDIITAKDE+KSR LI
Sbjct: 100 MASTIPAARQLVNHRHILVNGHIVDIPSYRCKPRDIITAKDEQKSRALI 148

[Close]
BLAST of MELO3C022836 vs. TrEMBL
Match: W8E3C8_9ROSI (Ribosomal protein S4 OS=Cucumis hystrix GN=rps4 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.0e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 148

[Close]
BLAST of MELO3C022836 vs. TrEMBL
Match: G3ETY7_CUCME (30S ribosomal protein S4, chloroplastic OS=Cucumis melo subsp. melo GN=rps4 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.0e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 148

[Close]
BLAST of MELO3C022836 vs. TrEMBL
Match: X2EY58_LAGSI (30S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria GN=rps4 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRALI 148

[Close]
BLAST of MELO3C022836 vs. TrEMBL
Match: X2F8K6_LAGSI (30S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria GN=rps4 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRALI 148

[Close]
BLAST of MELO3C022836 vs. TrEMBL
Match: X2F260_LAGSI (30S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria GN=rps4 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRALI 148

[Close]
BLAST of MELO3C022836 vs. TAIR10
Match: ATCG00380.1 (ATCG00380.1 chloroplast ribosomal protein S4)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-18
Identity = 42/49 (85.71%), Postives = 42/49 (85.71%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MA TIPQARQLVNH HILVNG IVDIPSYRCKPRDIIT KDE+ SRTL+
Sbjct: 100 MALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLV 148

[Close]
BLAST of MELO3C022836 vs. NCBI nr
Match: gi|346578193|ref|YP_004841785.1| (ribosomal protein S4 [Cucumis melo subsp. melo])

HSP 1 Score: 100.5 bits (249), Expect = 8.6e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 148

[Close]
BLAST of MELO3C022836 vs. NCBI nr
Match: gi|68164805|ref|YP_247601.1| (ribosomal protein S4 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 8.6e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 148

[Close]
BLAST of MELO3C022836 vs. NCBI nr
Match: gi|595647760|gb|AHM91181.1| (ribosomal protein S4 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRALI 148

[Close]
BLAST of MELO3C022836 vs. NCBI nr
Match: gi|595645420|gb|AHM88880.1| (ribosomal protein S4 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRALI 148

[Close]
BLAST of MELO3C022836 vs. NCBI nr
Match: gi|595647819|gb|AHM91239.1| (ribosomal protein S4 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLI 50
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LI
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRALI 148

The following BLAST results are available for this feature:
BLAST of MELO3C022836 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR4_CUCSA5.4e-21100.0030S ribosomal protein S4, chloroplastic OS=Cucumis sativus GN=rps4 PE=3 SV=1[more]
RR4_ATRBE1.1e-1891.8430S ribosomal protein S4, chloroplastic OS=Atropa belladonna GN=rps4 PE=3 SV=1[more]
RR4_SOLBU1.1e-1891.8430S ribosomal protein S4, chloroplastic OS=Solanum bulbocastanum GN=rps4 PE=3 SV... [more]
RR4_TOBAC1.1e-1891.8430S ribosomal protein S4, chloroplastic OS=Nicotiana tabacum GN=rps4 PE=3 SV=1[more]
RR4_SOLTU1.1e-1891.8430S ribosomal protein S4, chloroplastic OS=Solanum tuberosum GN=rps4 PE=3 SV=1[more]
BLAST of MELO3C022836 vs. TrEMBL
Match NameE-valueIdentityDescription
W8E3C8_9ROSI6.0e-19100.00Ribosomal protein S4 OS=Cucumis hystrix GN=rps4 PE=3 SV=1[more]
G3ETY7_CUCME6.0e-19100.0030S ribosomal protein S4, chloroplastic OS=Cucumis melo subsp. melo GN=rps4 PE=3... [more]
X2EY58_LAGSI2.3e-1897.9630S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria GN=rps4 PE=3 SV=1[more]
X2F8K6_LAGSI2.3e-1897.9630S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria GN=rps4 PE=3 SV=1[more]
X2F260_LAGSI2.3e-1897.9630S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria GN=rps4 PE=3 SV=1[more]
BLAST of MELO3C022836 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00380.11.6e-1885.71ATCG00380.1 chloroplast ribosomal protein S4[more]
BLAST of MELO3C022836 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|346578193|ref|YP_004841785.1|8.6e-19100.00ribosomal protein S4 [Cucumis melo subsp. melo][more]
gi|68164805|ref|YP_247601.1|8.6e-19100.00ribosomal protein S4 [Cucumis sativus][more]
gi|595647760|gb|AHM91181.1|3.3e-1897.96ribosomal protein S4 (chloroplast) [Lagenaria siceraria][more]
gi|595645420|gb|AHM88880.1|3.3e-1897.96ribosomal protein S4 (chloroplast) [Lagenaria siceraria][more]
gi|595647819|gb|AHM91239.1|3.3e-1897.96ribosomal protein S4 (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR022801Ribosomal_S4/S9
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022836T1MELO3C022836T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainGENE3DG3DSA:3.10.290.10coord: 1..48
score: 4.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 1..37
score: 4.0
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..49
score: 6.3
NoneNo IPR availablePANTHERPTHR11831:SF9SUBFAMILY NOT NAMEDcoord: 1..49
score: 6.3
NoneNo IPR availableunknownSSF55174Alpha-L RNA-binding motifcoord: 1..47
score: 4.32

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022836Wild cucumber (PI 183967)cpimeB343
MELO3C022836Cucumber (Chinese Long) v2cumeB347
MELO3C022836Watermelon (Charleston Gray)mewcgB023
MELO3C022836Watermelon (97103) v1mewmB013
MELO3C022836Cucurbita pepo (Zucchini)cpemeB158
MELO3C022836Cucurbita pepo (Zucchini)cpemeB360
MELO3C022836Bottle gourd (USVL1VR-Ls)lsimeB014
MELO3C022836Cucumber (Gy14) v2cgybmeB294
MELO3C022836Silver-seed gourdcarmeB0531
MELO3C022836Silver-seed gourdcarmeB0822
MELO3C022836Cucumber (Chinese Long) v3cucmeB351
MELO3C022836Watermelon (97103) v2mewmbB020
MELO3C022836Wax gourdmewgoB015
MELO3C022836Cucumber (Gy14) v1cgymeB007
MELO3C022836Cucurbita maxima (Rimu)cmameB252
MELO3C022836Cucurbita maxima (Rimu)cmameB636
MELO3C022836Cucurbita moschata (Rifu)cmomeB240
MELO3C022836Cucurbita moschata (Rifu)cmomeB626