MELO3C022823 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022823
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gag-pro-like protein
Location	chr9 : 12528903 .. 12529394 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTGGAAGAGGAAAAAGTGTTACGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGTTAGAAGACATGCCTGCATACCCTCCAGGTTTTACTCCGCAAAGGTCGTCTAGTCCTCGCATGACTTATCCTACACAAAATCCTAATCCGATCACCCAACAGGAAAACCATGTGAGTGATCCAATGTCTACTCCAATTACAGAAAATGGTAAGAAAATTTCAAAAGAGCAGGGTAGTAGAAAAAGACTGGAATTTCTAGAAGAAAGATTACGCCCCATTGAAGGTGCAGACATGTATGGGAGTATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCCAGATTTTGAGAAGTACAATGGAACCACGTGA

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTGGAAGAGGAAAAAGTGTTACGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGTTAGAAGACATGCCTGCATACCCTCCAGGTTTTACTCCGCAAAGGTCGTCTAGTCCTCGCATGACTTATCCTACACAAAATCCTAATCCGATCACCCAACAGGAAAACCATGTGAGTGATCCAATGTCTACTCCAATTACAGAAAATGGTAAGAAAATTTCAAAAGAGCAGGGTAGTAGAAAAAGACTGGAATTTCTAGAAGAAAGATTACGCCCCATTGAAGGTGCAGACATGTATGGGAGTATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCCAGATTTTGAGAAGTACAATGGAACCACGTGA

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTGGAAGAGGAAAAAGTGTTACGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGTTAGAAGACATGCCTGCATACCCTCCAGGTTTTACTCCGCAAAGGTCGTCTAGTCCTCGCATGACTTATCCTACACAAAATCCTAATCCGATCACCCAACAGGAAAACCATGTGAGTGATCCAATGTCTACTCCAATTACAGAAAATGGTAAGAAAATTTCAAAAGAGCAGGGTAGTAGAAAAAGACTGGAATTTCTAGAAGAAAGATTACGCCCCATTGAAGGTGCAGACATGTATGGGAGTATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCCAGATTTTGAGAAGTACAATGGAACCACGTGA

Protein sequence

MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYPPGFTPQRSSSPRMTYPTQNPNPITQQENHVSDPMSTPITENGKKISKEQGSRKRLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT*

Homology

[Close]

BLAST of MELO3C022823 vs. TrEMBL
Match: A0A061DM48_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-24
Identity = 68/187 (36.36%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           M ++ ++++  + +  E +  QL+KILEL++T +GK V G S   E          P YP
Sbjct: 1   MGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKVAGSSGTPEAVQQTETNTDPVYP 60

Query: 61  PGFTPQRSSSPRMTYPTQN----------PNPITQQENHV-----SDPMSTPITENGKKI 120
           PGFTP  + +  +  P+            P P   Q+  +     SDP+S P  ++ K+ 
Sbjct: 61  PGFTPPPARNASIPMPSMGQYPFFGMPIGPPPTYAQQRPIGGASPSDPISVPDLDDPKEQ 120

Query: 121 SK----------EQGSRKRLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPD 163
            K             + ++ +  EERLR +EG  MY S+DA +LCL+SDVVIPPKFK PD
Sbjct: 121 EKLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVSDVVIPPKFKVPD 180

[Close]

BLAST of MELO3C022823 vs. TrEMBL
Match: A0A061E8N3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-23
Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           M ++ ++++  + +  E +  QL+KILEL++T +GK  TG S   E          P YP
Sbjct: 420 MGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKATGSSGTPEDVQQTETNTDPVYP 479

Query: 61  PGFTPQRSSSPRMTYPTQN----------PNPITQQENHV-----SDPMSTPITENGKKI 120
           PGFTP  + +  +  P+            P P   Q+  +     SDP+S P  ++ K+ 
Sbjct: 480 PGFTPPPARNVSIPMPSVGQYPFFRMPIGPPPTYAQQRPIGGASPSDPISVPDLDDPKEQ 539

Query: 121 SK----------EQGSRKRLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPD 163
            K             + K+ +  EERLR +EG  MY S+DA +LCL+ DVVIPPKFK PD
Sbjct: 540 EKLKCGSVESKDNPDTHKKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKFKVPD 599

[Close]

BLAST of MELO3C022823 vs. TrEMBL
Match: A0A061EFL3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_018989 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-22
Identity = 68/187 (36.36%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           M ++ ++++  + +  E +  QL+KILEL++T +GK   G S   E          P YP
Sbjct: 380 MGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKAAGSSGTPEDVQQTETNTDPVYP 439

Query: 61  PGFTPQRSSSPRMTYPT----------QNPNPITQQENHV-----SDPMSTPITENGKKI 120
           PGFTP  + +  +  P+            P P   Q+  +     SDP+S P  ++ K+ 
Sbjct: 440 PGFTPPPARNASIPMPSVGQYPFFGMPMGPPPTYAQQRPIGGASPSDPISVPDLDDPKEQ 499

Query: 121 SK-EQGS---------RKRLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPD 163
            K + GS          ++ +  EERLR +EG  MY S+DA +LCL+ DVVIPPKFK PD
Sbjct: 500 EKLKYGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKFKVPD 559

[Close]

BLAST of MELO3C022823 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 65/181 (35.91%), Postives = 95/181 (52.49%), Query Frame = 1


Query: 7   DQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYPPGFTPQ 66
           D+++  ++++ G   QL+KILEL++T +GK V G     E          P YPPGFTP 
Sbjct: 2   DKIEKKQEEIMG---QLSKILELISTDKGKKVAGSFGTPEAVQQTETNTDPVYPPGFTPP 61

Query: 67  RSSSPRMTYPTQN----------PNPITQQENHV-----SDPMSTPITENGKKISK---- 126
            + +  +  P+            P P   Q+  +     SDP+S P  ++ K+  K    
Sbjct: 62  PARNASIPMPSMGQYPFFGMPIGPPPTYAQQRPIGGASPSDPISVPDLDDPKEQEKLKCG 121

Query: 127 ------EQGSRKRLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNG 163
                    + ++ +  EERLR +EG  MY S+DA +LCL+ DVVIPPKFK  DFEKY+G
Sbjct: 122 SVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKFKVSDFEKYDG 179

[Close]

BLAST of MELO3C022823 vs. TrEMBL
Match: A0A061EFF5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_010953 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT-GRGKSV----TGISSQVEVDLNQVLED 60
           M+E+  +++  + +  E +++QLAK++EL+ +  +GK      T   +    D    ++D
Sbjct: 290 MEEEQRERMDRMERAQEEMREQLAKMMELMMSLSKGKRAIEEPTPSENPPAQDSGNQMDD 349

Query: 61  MPAYPPGFTPQRSSSPRMTYPT-------QNPNPITQQENH----------VSDPMSTPI 120
            P+YPP FTP  + + +  +P          P P+  Q  H           ++P+  P 
Sbjct: 350 -PSYPPRFTPPHAQTSQRVHPQVIPPVYYNAPTPLGHQPTHGQFGPYPGINPAEPIHVPY 409

Query: 121 TENGKKISK----------EQGSRKRLEFLEERLRPIEGADMYGSIDATQLCLISDVVIP 163
            ++ K+  K           +  +K+ + LEERLR IEG D +G++DAT+LCL+ DV+IP
Sbjct: 410 LDDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFGTMDATELCLVPDVLIP 469

[Close]

BLAST of MELO3C022823 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 9.0e-81
Identity = 154/163 (94.48%), Postives = 158/163 (96.93%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLT GRGKSVTGISSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTPQRSSSPRMTYPTQNPNPITQQENHVSDPMSTPITENGKKISKEQGSRKRLEFLEE 120
           PGFTPQRSSSPRMTY TQNPNPITQQENHVSDPMSTPITE+GKKI +EQGSRKRLEF+EE
Sbjct: 61  PGFTPQRSSSPRMTYSTQNPNPITQQENHVSDPMSTPITESGKKILEEQGSRKRLEFVEE 120

Query: 121 RLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 164
           RLR IEGADMYGSIDATQLCLIS VVIPPKFKTP+FEKYNGTT
Sbjct: 121 RLRAIEGADMYGSIDATQLCLISYVVIPPKFKTPNFEKYNGTT 163

[Close]

BLAST of MELO3C022823 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 2.2e-79
Identity = 152/163 (93.25%), Postives = 156/163 (95.71%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILEL TTGR KSV GISSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTPQRSSSPRMTYPTQNPNPITQQENHVSDPMSTPITENGKKISKEQGSRKRLEFLEE 120
            GFTPQRSSSPRMTYPTQNPNPITQQ +HVSDPMSTPIT++GKKIS+EQ SRKRLEFLEE
Sbjct: 61  IGFTPQRSSSPRMTYPTQNPNPITQQTDHVSDPMSTPITKSGKKISEEQSSRKRLEFLEE 120

Query: 121 RLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 164
           RLR IEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT
Sbjct: 121 RLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 163

[Close]

BLAST of MELO3C022823 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 146/166 (87.95%), Postives = 153/166 (92.17%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           MDEQ+NDQVQAVRQDVEGLKDQLAKILELLTTGRGKSV GISSQVEVDLNQVLEDM  YP
Sbjct: 1   MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61  PGFTPQRSSSPRM---TYPTQNPNPITQQENHVSDPMSTPITENGKKISKEQGSRKRLEF 120
           PGFTPQ+SSSPR+   TYPTQNPN  TQQ  HVSDP+ST ITE GKKIS+EQGSR+R+EF
Sbjct: 61  PGFTPQQSSSPRIVDRTYPTQNPNTTTQQAVHVSDPISTLITEGGKKISEEQGSRRRMEF 120

Query: 121 LEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 164
           LEERLR IEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT
Sbjct: 121 LEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 166

[Close]

BLAST of MELO3C022823 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 1.5e-67
Identity = 141/170 (82.94%), Postives = 146/170 (85.88%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSV G SSQVEVDLNQVLED+ AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61  PGFTPQRSSSPRM---TYPTQ----NPNPITQQENHVSDPMSTPITENGKKISKEQGSRK 120
           P FTPQR SSPRM   TYPT     NPN  TQQ  HVSD +STPIT++GKKIS+EQGSRK
Sbjct: 61  PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQGSRK 120

Query: 121 RLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 164
           RLEFLEERL  IEG DMY SIDATQLCLISDVVIP KFK PDFEKYNGTT
Sbjct: 121 RLEFLEERLCTIEGIDMYESIDATQLCLISDVVIPLKFKIPDFEKYNGTT 170

[Close]

BLAST of MELO3C022823 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 4.5e-56
Identity = 126/170 (74.12%), Postives = 130/170 (76.47%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVTGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAV QDVEGL+DQL KILELLTTGRGK+V G SSQVEVDLNQVLEDM AY 
Sbjct: 1   MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61  PGFTPQRSSSPRM---TYPTQ----NPNPITQQENHVSDPMSTPITENGKKISKEQGSRK 120
           PGFTPQRSSSPRM   TYPT     NPN  TQQ  +                    GSR+
Sbjct: 61  PGFTPQRSSSPRMVDRTYPTSFPMPNPNTTTQQAVY--------------------GSRR 120

Query: 121 RLEFLEERLRPIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTT 164
           RLEFLEERLR IEGADMYGSIDATQLCLISDVVI PKFKTPDFEKYNGTT
Sbjct: 121 RLEFLEERLRAIEGADMYGSIDATQLCLISDVVISPKFKTPDFEKYNGTT 150

The following BLAST results are available for this feature:

BLAST of MELO3C022823 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061DM48_THECC	5.4e-24	36.36	Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1	[more]
A0A061E8N3_THECC	2.7e-23	36.36	Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1	[more]
A0A061EFL3_THECC	1.3e-22	36.36	Uncharacterized protein OS=Theobroma cacao GN=TCM_018989 PE=4 SV=1	[more]
A0A061E6J4_THECC	5.6e-21	35.91	Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1	[more]
A0A061EFF5_THECC	1.4e-19	31.96	Gag-pro-like protein OS=Theobroma cacao GN=TCM_010953 PE=4 SV=1	[more]

BLAST of MELO3C022823 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093710\|ref\|XP_008447676.1\|	9.0e-81	94.48	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	2.2e-79	93.25	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	1.6e-74	87.95	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659102853\|ref\|XP_008452348.1\|	1.5e-67	82.94	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]
gi\|659122237\|ref\|XP_008461036.1\|	4.5e-56	74.12	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022823T1	MELO3C022823T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 2..29 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022823	Silver-seed gourd	carmeB0531
MELO3C022823	Silver-seed gourd	carmeB0822
MELO3C022823	Cucumber (Chinese Long) v3	cucmeB351
MELO3C022823	Watermelon (97103) v2	mewmbB020
MELO3C022823	Wax gourd	mewgoB015
MELO3C022823	Cucumber (Gy14) v1	cgymeB007
MELO3C022823	Cucurbita maxima (Rimu)	cmameB252
MELO3C022823	Cucurbita maxima (Rimu)	cmameB636
MELO3C022823	Cucurbita moschata (Rifu)	cmomeB240
MELO3C022823	Cucurbita moschata (Rifu)	cmomeB626
MELO3C022823	Wild cucumber (PI 183967)	cpimeB343
MELO3C022823	Cucumber (Chinese Long) v2	cumeB347
MELO3C022823	Watermelon (Charleston Gray)	mewcgB023
MELO3C022823	Watermelon (97103) v1	mewmB013
MELO3C022823	Cucurbita pepo (Zucchini)	cpemeB158
MELO3C022823	Cucurbita pepo (Zucchini)	cpemeB360
MELO3C022823	Bottle gourd (USVL1VR-Ls)	lsimeB014
MELO3C022823	Cucumber (Gy14) v2	cgybmeB294