MELO3C022769 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022769
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein
Location	chr4 : 21304586 .. 21304753 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA*

Homology

[Close]

BLAST of MELO3C022769 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-21
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLR 54
           MTYC+DVEDEDEGDSTYATTT SEDIQYIETTNEWSQW DDLA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C022769 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1


Query: 6   DVEDE-DEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFT 49
           D+ED  DE DST+ATT  ++DI YIET+NEWSQW D+LAE + T
Sbjct: 315 DIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]

BLAST of MELO3C022769 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-21
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLR 54
           MTYC+DVEDEDEGDSTYATTT SEDIQYIETTNEWSQW DDLA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C022769 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-19
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 56
           MTYCDDV+D DEGD  YATTTT E+I YIE TNEWSQW D LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]

BLAST of MELO3C022769 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-12
Identity = 33/54 (61.11%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRN 55
           +TY ++++DED+GDST+ATT+  +DI YIE +NEW++W D LA SMFT+WQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTS-GDDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

[Close]

BLAST of MELO3C022769 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLR 54
           MT  +D+ D +E DS YATTTT ++IQYIETTNEW+QW D+L+++MF +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

[Close]

BLAST of MELO3C022769 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 6   DVEDE-DEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRN 55
           D+ED  DE DST+ATT  ++DI YIET+NEWSQW DDLAE MFTDW+LRN
Sbjct: 154 DIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:

BLAST of MELO3C022769 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	3.2e-21	90.57	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	5.0e-06	63.64	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C022769 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	4.6e-21	90.57	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659099182\|ref\|XP_008450472.1\|	7.4e-19	81.82	PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]	[more]
gi\|659086609\|ref\|XP_008444024.1\|	5.1e-12	61.11	PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo]	[more]
gi\|659125597\|ref\|XP_008462767.1\|	8.8e-12	62.26	PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo]	[more]
gi\|659121362\|ref\|XP_008460622.1\|	1.5e-11	72.00	PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022769T1	MELO3C022769T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022769	Cucurbita moschata (Rifu)	cmomeB457
MELO3C022769	Cucurbita moschata (Rifu)	cmomeB559
MELO3C022769	Wild cucumber (PI 183967)	cpimeB200
MELO3C022769	Cucumber (Chinese Long) v2	cumeB210
MELO3C022769	Watermelon (Charleston Gray)	mewcgB348
MELO3C022769	Watermelon (97103) v1	mewmB361
MELO3C022769	Cucurbita pepo (Zucchini)	cpemeB229
MELO3C022769	Cucurbita pepo (Zucchini)	cpemeB687
MELO3C022769	Bottle gourd (USVL1VR-Ls)	lsimeB003
MELO3C022769	Cucumber (Gy14) v2	cgybmeB173
MELO3C022769	Silver-seed gourd	carmeB0078
MELO3C022769	Silver-seed gourd	carmeB0773
MELO3C022769	Cucumber (Chinese Long) v3	cucmeB206
MELO3C022769	Watermelon (97103) v2	mewmbB351
MELO3C022769	Wax gourd	mewgoB406
MELO3C022769	Cucumber (Gy14) v1	cgymeB251
MELO3C022769	Cucurbita maxima (Rimu)	cmameB467
MELO3C022769	Cucurbita maxima (Rimu)	cmameB570