MELO3C022758 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022758
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified
Location	chr4 : 21094502 .. 21094984 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTCCGGCCGAGGAAGATGAAGGCAACACCATGGAGGAAATTGCAATGGAAATAGTGAACTTGTCTCTAAATTCGTTGGCGGGCCTTAGCTCTTCCAAGATGATAAAAATAAAAGGGGAAATCAAGGGCCACAGGGTAGTTGTGCTAATCAATGGAGGAGCTACCCACAACTTCATTTCAGAAGTTACCAAAATGTTATGGATTCCGATCTAAGCCTTAAATGATTATGGCGTAGTTCTAGGAACTGTAGTCCACGCGACAAGTGTGTGTAAGAATGCGCGCCTAACCATTGCAAACTTGGCCATTACTCACAACTTCCTTCCATTGCCTTTAGGAAGTGCAGATGTTATTTTGGGGGTTACATGGTTGGAAACATTAGGAAATGTCATTTCTTTTTTTTTTAAATGGAGACAAGCTTCTTTATTAATATAAAACTCCATGTACAAGAGAATTATACAATAAGAATAATAGAGAAGT

mRNA sequence

ATGGAAACTCCGGCCGAGGAAGATGAAGGCAACACCATGGAGGAAATTGCAATGGAAATAGTGAACTTGTCTCTAAATTCGTTGGCGGGCCTTAGCTCTTCCAAGATGATAAAAATAAAAGGGGAAATCAAGGGCCACAGGGTAGTTGTGCTAATCAATGGAGGAGCTACCCACAACTTCATTTCAGAAGTTACCAAAATGTTATGGATTCCGATCTAAGCCTTAAATGATTATGGCGTAGTTCTAGGAACTGTAGTCCACGCGACAAGTGTGTGTAAGAATGCGCGCCTAACCATTGCAAACTTGGCCATTACTCACAACTTCCTTCCATTGCCTTTAGGAAGTGCAGATGTTATTTTGGGGGTTACATGGTTGGAAACATTAGGAAATGTCATTTCTTTTTTTTTTAAATGGAGACAAGCTTCTTTATTAATATAAAACTCCATGTACAAGAGAATTATACAATAAGAATAATAGAGAAGT

Coding sequence (CDS)

ATGGAAACTCCGGCCGAGGAAGATGAAGGCAACACCATGGAGGAAATTGCAATGGAAATAGTGAACTTGTCTCTAAATTCGTTGGCGGGCCTTAGCTCTTCCAAGATGATAAAAATAAAAGGGGAAATCAAGGGCCACAGGGTAGTTGTGCTAATCAATGGAGGAGCTACCCACAACTTCATTTCAGAAGTTACCAAAATGTTATGGATTCCGATCTAA

Protein sequence

METPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFISEVTKMLWIPI*

Homology

[Close]

BLAST of MELO3C022758 vs. TrEMBL
Match: A0A087GAS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 1   METPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNF 60
           +E   EE +  T++EIA  +  LSLNS+ G+SS + +KI+G I+G  VVVLI+ GATHNF
Sbjct: 356 LEEADEESDEETIQEIA-GMATLSLNSMVGISSPRTVKIRGVIQGEHVVVLIDSGATHNF 415

Query: 61  ISE 64
           ISE
Sbjct: 416 ISE 417

[Close]

BLAST of MELO3C022758 vs. TrEMBL
Match: A0A087HNU1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.1e-08
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 1   METPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNF 60
           +E   EE +  T++EI + +  LSLNS+ G+SS + +KI+G I+G  VVVLI+ GATHNF
Sbjct: 347 LEEADEESDEETIQEI-VGMATLSLNSMVGISSPRTVKIRGVIQGEPVVVLIDSGATHNF 406

Query: 61  ISE 64
           ISE
Sbjct: 407 ISE 408

[Close]

BLAST of MELO3C022758 vs. TrEMBL
Match: A0A087HF90_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G041600 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-07
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 6   EEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFISE 64
           EE+E   +     E+  LSLNS+ G+SS + +K++G I+G  +VV+I+ GA+HNFISE
Sbjct: 135 EEEENEEVNRRVTEVAELSLNSMVGISSPRTVKLRGTIRGESIVVMIDNGASHNFISE 192

[Close]

BLAST of MELO3C022758 vs. TrEMBL
Match: A0A087GH17_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.9e-07
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 6   EEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFISE 64
           EE+E   +     ++  LSLNS+ G+SS + +K++G I+G  +VV+I+ GA+HNFISE
Sbjct: 135 EEEENEEVNRRVTKVAELSLNSMVGISSPRTVKLRGTIRGESIVVMIDSGASHNFISE 192

[Close]

BLAST of MELO3C022758 vs. TrEMBL
Match: A0A087FY99_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 6   EEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFISE 64
           +E+E   +     E+  LSLNS+ G+SS + +K++G I+G  V+V+I+ GA+HNFISE
Sbjct: 198 KEEENEEVNRGVTEVAKLSLNSMVGISSPRTVKLRGTIRGESVMVMIDSGASHNFISE 255

[Close]

BLAST of MELO3C022758 vs. NCBI nr
Match: gi|923869129|ref|XP_013709012.1| (PREDICTED: uncharacterized protein LOC106412644 [Brassica napus])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 2   ETPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFI 61
           ETP EEDE   +E +  E+   S+NS+ GLSSS+ +K+KGE+ G  V+VLI+ GA+HNF+
Sbjct: 416 ETPEEEDE---VEAVVAEV---SINSVVGLSSSRTMKLKGELNGEEVIVLIDSGASHNFV 471

Query: 62  SE 64
           SE
Sbjct: 476 SE 471

[Close]

BLAST of MELO3C022758 vs. NCBI nr
Match: gi|674234210|gb|KFK26975.1| (hypothetical protein AALP_AA8G317800 [Arabis alpina])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 1   METPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNF 60
           +E   EE +  T++EIA  +  LSLNS+ G+SS + +KI+G I+G  VVVLI+ GATHNF
Sbjct: 356 LEEADEESDEETIQEIA-GMATLSLNSMVGISSPRTVKIRGVIQGEHVVVLIDSGATHNF 415

Query: 61  ISE 64
           ISE
Sbjct: 416 ISE 417

[Close]

BLAST of MELO3C022758 vs. NCBI nr
Match: gi|922573753|ref|XP_013615209.1| (PREDICTED: uncharacterized protein LOC106321496 [Brassica oleracea var. oleracea])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 2   ETPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFI 61
           ETP EEDE   +E +  E+   S+NS+ GLSSS+ +K+KGE+ G  V+VLI+ GA+HNF+
Sbjct: 416 ETPEEEDE---VEAVVAEV---SINSVVGLSSSRTMKLKGELNGEEVIVLIDSGASHNFV 471

Query: 62  SE 64
           SE
Sbjct: 476 SE 471

[Close]

BLAST of MELO3C022758 vs. NCBI nr
Match: gi|923908786|ref|XP_013724262.1| (PREDICTED: uncharacterized protein LOC106428065 [Brassica napus])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 2   ETPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFI 61
           ETP EEDE   +E +  E+   S+NS+ GLSSS+ +K+KGE+ G  V+VLI+ GA+HNF+
Sbjct: 416 ETPEEEDE---VEAVVAEV---SINSVVGLSSSRTMKLKGELNGEEVIVLIDSGASHNFV 471

Query: 62  SE 64
           SE
Sbjct: 476 SE 471

[Close]

BLAST of MELO3C022758 vs. NCBI nr
Match: gi|923908788|ref|XP_013724263.1| (PREDICTED: uncharacterized protein LOC106428066 [Brassica napus])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 2   ETPAEEDEGNTMEEIAMEIVNLSLNSLAGLSSSKMIKIKGEIKGHRVVVLINGGATHNFI 61
           ETP EEDE   +E +  E+   S+NS+ GLSSS+ +K+KGE+ G  V+VLI+ GA+HNF+
Sbjct: 416 ETPEEEDE---VEAVVAEV---SINSVVGLSSSRTMKLKGELNGEEVIVLIDSGASHNFV 471

Query: 62  SE 64
           SE
Sbjct: 476 SE 471

The following BLAST results are available for this feature:

BLAST of MELO3C022758 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087GAS3_ARAAL	2.4e-08	53.97	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]
A0A087HNU1_ARAAL	9.1e-08	52.38	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1	[more]
A0A087HF90_ARAAL	2.0e-07	46.55	Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G041600 PE=4 SV=1	[more]
A0A087GH17_ARAAL	5.9e-07	44.83	Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1	[more]
A0A087FY99_ARAAL	1.3e-06	44.83	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1	[more]

BLAST of MELO3C022758 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923869129\|ref\|XP_013709012.1\|	3.4e-08	53.23	PREDICTED: uncharacterized protein LOC106412644 [Brassica napus]	[more]
gi\|674234210\|gb\|KFK26975.1\|	3.4e-08	53.97	hypothetical protein AALP_AA8G317800 [Arabis alpina]	[more]
gi\|922573753\|ref\|XP_013615209.1\|	3.4e-08	53.23	PREDICTED: uncharacterized protein LOC106321496 [Brassica oleracea var. oleracea...	[more]
gi\|923908786\|ref\|XP_013724262.1\|	3.4e-08	53.23	PREDICTED: uncharacterized protein LOC106428065 [Brassica napus]	[more]
gi\|923908788\|ref\|XP_013724263.1\|	3.4e-08	53.23	PREDICTED: uncharacterized protein LOC106428066 [Brassica napus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU61126	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022758T1	MELO3C022758T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61126	MU61126	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022758	Silver-seed gourd	carmeB0078
MELO3C022758	Silver-seed gourd	carmeB0773
MELO3C022758	Cucumber (Chinese Long) v3	cucmeB206
MELO3C022758	Watermelon (97103) v2	mewmbB351
MELO3C022758	Wax gourd	mewgoB406
MELO3C022758	Cucumber (Gy14) v1	cgymeB251
MELO3C022758	Cucurbita maxima (Rimu)	cmameB467
MELO3C022758	Cucurbita maxima (Rimu)	cmameB570
MELO3C022758	Cucurbita moschata (Rifu)	cmomeB457
MELO3C022758	Cucurbita moschata (Rifu)	cmomeB559
MELO3C022758	Wild cucumber (PI 183967)	cpimeB200
MELO3C022758	Cucumber (Chinese Long) v2	cumeB210
MELO3C022758	Watermelon (Charleston Gray)	mewcgB348
MELO3C022758	Watermelon (97103) v1	mewmB361
MELO3C022758	Cucurbita pepo (Zucchini)	cpemeB229
MELO3C022758	Cucurbita pepo (Zucchini)	cpemeB687
MELO3C022758	Bottle gourd (USVL1VR-Ls)	lsimeB003
MELO3C022758	Cucumber (Gy14) v2	cgybmeB173