MELO3C022755 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022755
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA repair UVH3-like protein
Location	chr4 : 21043598 .. 21043826 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGATTGGCATTGTTAATGTCGTTAAGGTTATGAATGCATTTCCGGAGGAAGATGGGCTCTATAAATTCAAAGAATGGATTGAATCACCATATCAAACCATCTTAGGGCCGCTTGGTAAAAAAACAGGGTTAAATGCATGTAAAAGAGTGTCAAAAGCAAGTGAGAATGACACGACTTGCTCAAATAGCAGTGGTTCTGCATCTGAAGAGAACATATCGAAAGATTGA

mRNA sequence

TGGGATTGGCATTGTTAATGTCGTTAAGGTTATGAATGCATTTCCGGAGGAAGATGGGCTCTATAAATTCAAAGAATGGATTGAATCACCATATCAAACCATCTTAGGGCCGCTTGGTAAAAAAACAGGGTTAAATGCATGTAAAAGAGTGTCAAAAGCAAGTGAGAATGACACGACTTGCTCAAATAGCAGTGGTTCTGCATCTGAAGAGAACATATCGAAAGATTGA

Coding sequence (CDS)

TGGGATTGGCATTGTTAATGTCGTTAAGGTTATGAATGCATTTCCGGAGGAAGATGGGCTCTATAAATTCAAAGAATGGATTGAATCACCATATCAAACCATCTTAGGGCCGCTTGGTAAAAAAACAGGGTTAAATGCATGTAAAAGAGTGTCAAAAGCAAGTGAGAATGACACGACTTGCTCAAATAGCAGTGGTTCTGCATCTGAAGAGAACATATCGAAAGATTGA

Protein sequence

GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTCSNSSGSASEENISKD*

Homology

[Close]

BLAST of MELO3C022755 vs. Swiss-Prot
Match: UVH3_ARATH (DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN ++V+ AFPEEDGL KF+EW+ESP  TILG    KTG    KR S + +N    
Sbjct: 1025 GIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGII 1084

Query: 61   SNSSGSASEE 71
            S +S   +EE
Sbjct: 1085 SGASTDDTEE 1094

[Close]

BLAST of MELO3C022755 vs. TrEMBL
Match: A0A0A0LG49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G835790 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN V+VMNAFPEEDGL+KFKEWIESP  +ILGPLG KTGLNA KR SKASENDTTC
Sbjct: 1028 GIGIVNAVEVMNAFPEEDGLHKFKEWIESPDPSILGPLGAKTGLNAHKRGSKASENDTTC 1087

Query: 61   SNSSGSASEENISKD 76
            SNSSGSASEENISKD
Sbjct: 1088 SNSSGSASEENISKD 1102

[Close]

BLAST of MELO3C022755 vs. TrEMBL
Match: A0A0B0MPZ2_GOSAR (DNA repair UVH3-like protein OS=Gossypium arboreum GN=F383_02033 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-13
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN ++V+NAFPEEDGL+KF+EWIESP  TILG L  + G +A KR  K++E D   
Sbjct: 1091 GIGIVNAIEVVNAFPEEDGLHKFQEWIESPDPTILGKLNVQEGSSAWKRGPKSTEKDVNS 1150

Query: 61   SNSSGSASEEN 72
            + +S   SE N
Sbjct: 1151 TKTSTGGSESN 1161

[Close]

BLAST of MELO3C022755 vs. TrEMBL
Match: A0A0D2QW79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G260400 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-13
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN ++V+NAFPEEDGL+KF+EWIESP  TILG L  + G +A KR  K++E D   
Sbjct: 1090 GIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNG 1149

Query: 61   SNSSGSASEEN 72
            + +S   SE N
Sbjct: 1150 TKTSTRGSESN 1160

[Close]

BLAST of MELO3C022755 vs. TrEMBL
Match: A0A0D2NEH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G260400 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-13
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN ++V+NAFPEEDGL+KF+EWIESP  TILG L  + G +A KR  K++E D   
Sbjct: 1097 GIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNG 1156

Query: 61   SNSSGSASEEN 72
            + +S   SE N
Sbjct: 1157 TKTSTRGSESN 1167

[Close]

BLAST of MELO3C022755 vs. TrEMBL
Match: A0A0D2QW74_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G260400 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-13
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN ++V+NAFPEEDGL+KF+EWIESP  TILG L  + G +A KR  K++E D   
Sbjct: 1061 GIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNG 1120

Query: 61   SNSSGSASEEN 72
            + +S   SE N
Sbjct: 1121 TKTSTRGSESN 1131

[Close]

BLAST of MELO3C022755 vs. TAIR10
Match: AT3G28030.1 (AT3G28030.1 5'-3' exonuclease family protein)

HSP 1 Score: 73.6 bits (179), Expect = 6.1e-14
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN ++V+ AFPEEDGL KF+EW+ESP  TILG    KTG    KR S + +N    
Sbjct: 1025 GIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGII 1084

Query: 61   SNSSGSASEE 71
            S +S   +EE
Sbjct: 1085 SGASTDDTEE 1094

[Close]

BLAST of MELO3C022755 vs. NCBI nr
Match: gi|449446847|ref|XP_004141182.1| (PREDICTED: DNA repair protein UVH3 isoform X1 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-28
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN V+VMNAFPEEDGL+KFKEWIESP  +ILGPLG KTGLNA KR SKASENDTTC
Sbjct: 988  GIGIVNAVEVMNAFPEEDGLHKFKEWIESPDPSILGPLGAKTGLNAHKRGSKASENDTTC 1047

Query: 61   SNSSGSASEENISKD 76
            SNSSGSASEENISKD
Sbjct: 1048 SNSSGSASEENISKD 1062

[Close]

BLAST of MELO3C022755 vs. NCBI nr
Match: gi|778685753|ref|XP_011652268.1| (PREDICTED: DNA repair protein UVH3 isoform X3 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-28
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1


Query: 1   GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
           GIGIVN V+VMNAFPEEDGL+KFKEWIESP  +ILGPLG KTGLNA KR SKASENDTTC
Sbjct: 763 GIGIVNAVEVMNAFPEEDGLHKFKEWIESPDPSILGPLGAKTGLNAHKRGSKASENDTTC 822

Query: 61  SNSSGSASEENISKD 76
           SNSSGSASEENISKD
Sbjct: 823 SNSSGSASEENISKD 837

[Close]

BLAST of MELO3C022755 vs. NCBI nr
Match: gi|700204509|gb|KGN59642.1| (hypothetical protein Csa_3G835790 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-28
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN V+VMNAFPEEDGL+KFKEWIESP  +ILGPLG KTGLNA KR SKASENDTTC
Sbjct: 1028 GIGIVNAVEVMNAFPEEDGLHKFKEWIESPDPSILGPLGAKTGLNAHKRGSKASENDTTC 1087

Query: 61   SNSSGSASEENISKD 76
            SNSSGSASEENISKD
Sbjct: 1088 SNSSGSASEENISKD 1102

[Close]

BLAST of MELO3C022755 vs. NCBI nr
Match: gi|778685747|ref|XP_011652266.1| (PREDICTED: DNA repair protein UVH3 isoform X2 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-28
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1


Query: 1   GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
           GIGIVN V+VMNAFPEEDGL+KFKEWIESP  +ILGPLG KTGLNA KR SKASENDTTC
Sbjct: 767 GIGIVNAVEVMNAFPEEDGLHKFKEWIESPDPSILGPLGAKTGLNAHKRGSKASENDTTC 826

Query: 61  SNSSGSASEENISKD 76
           SNSSGSASEENISKD
Sbjct: 827 SNSSGSASEENISKD 841

[Close]

BLAST of MELO3C022755 vs. NCBI nr
Match: gi|659085822|ref|XP_008443624.1| (PREDICTED: DNA repair protein UVH3 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-26
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 1


Query: 1    GIGIVNVVKVMNAFPEEDGLYKFKEWIESPYQTILGPLGKKTGLNACKRVSKASENDTTC 60
            GIGIVN V+VMNAF EEDGL+KFKEWIESP  +ILGPLG KTGLNA KR SKASEN+TTC
Sbjct: 979  GIGIVNAVEVMNAFLEEDGLHKFKEWIESPDPSILGPLGAKTGLNARKRGSKASENETTC 1038

Query: 61   SNSSGSASEENISKD 76
            SNSSG ASEENISKD
Sbjct: 1039 SNSSGPASEENISKD 1053

The following BLAST results are available for this feature:

BLAST of MELO3C022755 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UVH3_ARATH	1.1e-12	52.86	DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1	[more]

BLAST of MELO3C022755 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG49_CUCSA	2.2e-28	88.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G835790 PE=4 SV=1	[more]
A0A0B0MPZ2_GOSAR	2.0e-13	56.34	DNA repair UVH3-like protein OS=Gossypium arboreum GN=F383_02033 PE=4 SV=1	[more]
A0A0D2QW79_GOSRA	4.4e-13	56.34	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G260400 PE=4 SV=1	[more]
A0A0D2NEH1_GOSRA	4.4e-13	56.34	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G260400 PE=4 SV=1	[more]
A0A0D2QW74_GOSRA	4.4e-13	56.34	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G260400 PE=4 SV=1	[more]

BLAST of MELO3C022755 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28030.1	6.1e-14	52.86	5'-3' exonuclease family protein	[more]

BLAST of MELO3C022755 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446847\|ref\|XP_004141182.1\|	3.1e-28	88.00	PREDICTED: DNA repair protein UVH3 isoform X1 [Cucumis sativus]	[more]
gi\|778685753\|ref\|XP_011652268.1\|	3.1e-28	88.00	PREDICTED: DNA repair protein UVH3 isoform X3 [Cucumis sativus]	[more]
gi\|700204509\|gb\|KGN59642.1\|	3.1e-28	88.00	hypothetical protein Csa_3G835790 [Cucumis sativus]	[more]
gi\|778685747\|ref\|XP_011652266.1\|	3.1e-28	88.00	PREDICTED: DNA repair protein UVH3 isoform X2 [Cucumis sativus]	[more]
gi\|659085822\|ref\|XP_008443624.1\|	5.0e-26	84.00	PREDICTED: DNA repair protein UVH3 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022755T1	MELO3C022755T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022755	Cucumber (Chinese Long) v3	cucmeB206
MELO3C022755	Watermelon (97103) v2	mewmbB351
MELO3C022755	Wax gourd	mewgoB406
MELO3C022755	Cucumber (Gy14) v1	cgymeB251
MELO3C022755	Cucurbita maxima (Rimu)	cmameB467
MELO3C022755	Cucurbita maxima (Rimu)	cmameB570
MELO3C022755	Cucurbita moschata (Rifu)	cmomeB457
MELO3C022755	Cucurbita moschata (Rifu)	cmomeB559
MELO3C022755	Wild cucumber (PI 183967)	cpimeB200
MELO3C022755	Cucumber (Chinese Long) v2	cumeB210
MELO3C022755	Watermelon (Charleston Gray)	mewcgB348
MELO3C022755	Cucurbita pepo (Zucchini)	cpemeB229
MELO3C022755	Cucurbita pepo (Zucchini)	cpemeB687
MELO3C022755	Bottle gourd (USVL1VR-Ls)	lsimeB003
MELO3C022755	Cucumber (Gy14) v2	cgybmeB173
MELO3C022755	Silver-seed gourd	carmeB0078
MELO3C022755	Silver-seed gourd	carmeB0773