MELO3C022713.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022713.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	UBN2_3 domain-containing protein
Location	chr04 : 20428372 .. 20428881 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGATCGACAGGATTTACGGCTTTCTTGTTGGTCTTAATCCTAAGTTTGATATAGTTCGAGGGCATATACTACACCAGAGGCCAATTCCCTCCTTGATGGAAGTCTATTATGAAATCCGCCTTGAGGAGAATTGCACAAGTGCTGTGAGTATTTTAGCAACTCCCAATATTGACTTTGCTGCTTTTAGTGCGAGGTCCTCCAACAGTGGCAGTGACAAGCACGATAGAAAACCAATTCCTGTCTGTGAGAATAGCAAAAAACAATGGCATACCAAAGAACGGTATTGGAAGTTACATGGTCGTTCACCAGGAGGTAAGAAACGCGATCCCAACGACAAACAGAACACAGGGTGGGCCTATGTGAGTGAGTCTAGTGGACCTTCTCAACCACTTGATCCACACGGGAACCAGACCTATTTCAGCCCCGCTACTTTAGGTGCCATTGTCCAATCAGGTATACCTCAATCCTTTAGTTTCATTAGCGTTGATGGAAAGAACCTCTAG

mRNA sequence

ATGGAAGAGATCGACAGGATTTACGGCTTTCTTGTTGGTCTTAATCCTAAGTTTGATATAGTTCGAGGGCATATACTACACCAGAGGCCAATTCCCTCCTTGATGGAAGTCTATTATGAAATCCGCCTTGAGGAGAATTGCACAAGTGCTGTGAGTATTTTAGCAACTCCCAATATTGACTTTGCTGCTTTTAGTGCGAGGTCCTCCAACAGTGGCAGTGACAAGCACGATAGAAAACCAATTCCTGTCTGTGAGAATAGCAAAAAACAATGGCATACCAAAGAACGGTATTGGAAGTTACATGGTCGTTCACCAGGAGGTAAGAAACGCGATCCCAACGACAAACAGAACACAGGGTGGGCCTATGTGAGTGAGTCTAGTGGACCTTCTCAACCACTTGATCCACACGGGAACCAGACCTATTTCAGCCCCGCTACTTTAGGTGCCATTGTCCAATCAGGTATACCTCAATCCTTTAGTTTCATTAGCGTTGATGGAAAGAACCTCTAG

Coding sequence (CDS)

ATGGAAGAGATCGACAGGATTTACGGCTTTCTTGTTGGTCTTAATCCTAAGTTTGATATAGTTCGAGGGCATATACTACACCAGAGGCCAATTCCCTCCTTGATGGAAGTCTATTATGAAATCCGCCTTGAGGAGAATTGCACAAGTGCTGTGAGTATTTTAGCAACTCCCAATATTGACTTTGCTGCTTTTAGTGCGAGGTCCTCCAACAGTGGCAGTGACAAGCACGATAGAAAACCAATTCCTGTCTGTGAGAATAGCAAAAAACAATGGCATACCAAAGAACGGTATTGGAAGTTACATGGTCGTTCACCAGGAGGTAAGAAACGCGATCCCAACGACAAACAGAACACAGGGTGGGCCTATGTGAGTGAGTCTAGTGGACCTTCTCAACCACTTGATCCACACGGGAACCAGACCTATTTCAGCCCCGCTACTTTAGGTGCCATTGTCCAATCAGGTATACCTCAATCCTTTAGTTTCATTAGCGTTGATGGAAAGAACCTCTAG

Protein sequence

MEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSGIPQSFSFISVDGKNL

Homology

[Close]

BLAST of MELO3C022713.2 vs. NCBI nr
Match: XP_008462481.1 (PREDICTED: uncharacterized protein LOC103500824 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 97/169 (57.40%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 1   MEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNID 60
           +EE D  Y F  GLNPKFD V G IL QRP+ S++EV +E+ LEE+ T+A+ +L TP ID
Sbjct: 21  LEEADHDYDFFAGLNPKFDTVCGRILGQRPLSSIIEVCFEVCLEEDRTNAMGVLTTPTID 80

Query: 61  FAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQNTGW 120
             AFSARSSN  SDK++ K I VCE+ KKQWHTK+R WKLHGR PGGKK+  N+KQN+G 
Sbjct: 81  IVAFSARSSNHDSDKNNGKLISVCEHCKKQWHTKDRCWKLHGRPPGGKKQSSNEKQNSGR 140

Query: 121 AYVSES--SGPSQPLDPHGNQTYFSPATLGAIVQSGIPQSFSFISVDGK 168
           AY+SE+  +  SQ   P  +QT     TLGAI QS +PQS   ISVDG+
Sbjct: 141 AYISETTLASTSQSTGPIASQT--KTPTLGAIAQSRVPQSLGLISVDGR 187

[Close]

BLAST of MELO3C022713.2 vs. NCBI nr
Match: XP_010651194.1 (PREDICTED: uncharacterized protein LOC104879574 isoform X2 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   EEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNIDF 61
           EE DR+Y FL GLN   D VRG IL ++P+PS+ EV+ E+R EE     +     P  + 
Sbjct: 192 EENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVMLTDPEPKSNP 251

Query: 62  AAFSARSSNSGSD-KHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPND 115
              S+   + GSD   DR+  P C++ KK WHTKE  WK+HG+    KK++ +D
Sbjct: 252 EIESSALVSKGSDLDGDRRKKPWCDHCKKPWHTKETCWKIHGKPQNFKKKNGSD 305

[Close]

BLAST of MELO3C022713.2 vs. NCBI nr
Match: XP_019076066.1 (PREDICTED: uncharacterized protein LOC104879574 isoform X1 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   EEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNIDF 61
           EE DR+Y FL GLN   D VRG IL ++P+PS+ EV+ E+R EE     +     P  + 
Sbjct: 192 EENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVMLTDPEPKSNP 251

Query: 62  AAFSARSSNSGSD-KHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPND 115
              S+   + GSD   DR+  P C++ KK WHTKE  WK+HG+    KK++ +D
Sbjct: 252 EIESSALVSKGSDLDGDRRKKPWCDHCKKPWHTKETCWKIHGKPQNFKKKNGSD 305

[Close]

BLAST of MELO3C022713.2 vs. NCBI nr
Match: XP_024441641.1 (uncharacterized protein LOC112324187 [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 6.5e-14
Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 2   EEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNIDF 61
           EE DR+Y FL GL+   D VRG IL ++P+P + EV+ E++ EE     +     P  + 
Sbjct: 87  EENDRVYVFLAGLHQNLDEVRGRILGRKPLPFIREVFSEVKREEARRKVMLTDPEPKSNL 146

Query: 62  AAFSARSSNSGSDKH-DRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPND 115
              S+   + GSD   DR+  P C++ KK WHTKE  WK+HG+    KK++ ND
Sbjct: 147 EIESSALVSRGSDSDGDRRKKPWCDHCKKPWHTKETCWKIHGKPQNFKKKNGND 200

[Close]

BLAST of MELO3C022713.2 vs. NCBI nr
Match: XP_024038874.1 (uncharacterized protein LOC112097724 [Citrus clementina])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 52/135 (38.52%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 1   MEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAV--SILATPN 60
           M E DR+Y FL GLN   D VRG IL ++P+PS+ EV+ E+R EE   + +   + AT  
Sbjct: 193 MLENDRVYVFLAGLNRDLDEVRGRILSRKPLPSIREVFSEVRREEARRNVMLNDVKATSE 252

Query: 61  IDFAAFSARSSNSGSDKHDRK--PIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQ 120
           ++ +  SA  S +     DR+    P C+  K+ WHT+E  WKLHG+ P  KK+   D +
Sbjct: 253 VESSESSALVSKAPEPDGDRRNSKKPWCDFCKRAWHTRETCWKLHGKPPHVKKKQGGDGR 312

Query: 121 NTGWAYVSESSGPSQ 132
                   E SG S+
Sbjct: 313 AFQATSDQEQSGSSE 327

[Close]

BLAST of MELO3C022713.2 vs. TrEMBL
Match: tr|A0A1S3CH25|A0A1S3CH25_CUCME (uncharacterized protein LOC103500824 OS=Cucumis melo OX=3656 GN=LOC103500824 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 8.9e-44
Identity = 97/169 (57.40%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 1   MEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNID 60
           +EE D  Y F  GLNPKFD V G IL QRP+ S++EV +E+ LEE+ T+A+ +L TP ID
Sbjct: 21  LEEADHDYDFFAGLNPKFDTVCGRILGQRPLSSIIEVCFEVCLEEDRTNAMGVLTTPTID 80

Query: 61  FAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQNTGW 120
             AFSARSSN  SDK++ K I VCE+ KKQWHTK+R WKLHGR PGGKK+  N+KQN+G 
Sbjct: 81  IVAFSARSSNHDSDKNNGKLISVCEHCKKQWHTKDRCWKLHGRPPGGKKQSSNEKQNSGR 140

Query: 121 AYVSES--SGPSQPLDPHGNQTYFSPATLGAIVQSGIPQSFSFISVDGK 168
           AY+SE+  +  SQ   P  +QT     TLGAI QS +PQS   ISVDG+
Sbjct: 141 AYISETTLASTSQSTGPIASQT--KTPTLGAIAQSRVPQSLGLISVDGR 187

[Close]

BLAST of MELO3C022713.2 vs. TrEMBL
Match: tr|A0A1U8QBC0|A0A1U8QBC0_NELNU (uncharacterized protein LOC109115911 OS=Nelumbo nucifera OX=4432 GN=LOC109115911 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 3   EIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSA----VSILATPN 62
           E  R++ FL GLN + D VRG IL ++P+P++ EV+ E+R EE         VS   T N
Sbjct: 184 ERGRVFVFLAGLNKELDEVRGRILGRKPLPTIREVFSEVRREEAWRQVMLKNVSETKTEN 243

Query: 63  IDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQNT 120
            + +A  AR  +   +K   K  P C++ +K WHT+E  WKLHG+  G KK+  ND ++ 
Sbjct: 244 -EGSALVARGVDLDGEKRGGKQRPWCDHCRKPWHTRETCWKLHGKPAGWKKKSGNDNKSG 303

[Close]

BLAST of MELO3C022713.2 vs. TrEMBL
Match: tr|A5BAZ3|A5BAZ3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004170 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 49/136 (36.03%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 3   EIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAV---SILATPNI 62
           E  R++ F +GLN +FD VRG I+  +P+PSL E + E+R EE+    +        P +
Sbjct: 171 EQKRLFKFFLGLNREFDDVRGRIMGIKPLPSLREAFSEVRREESRKKVIMGSKEQPAPTL 230

Query: 63  DFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQNTG 122
           D +AF+ARS NS      ++  P C+  KK  H KE  WKLHG+    K +  +D+   G
Sbjct: 231 DASAFAARSFNSSGGDRQKRDRPWCDYCKKPGHYKEACWKLHGKPADWKPKPRSDRD--G 290

Query: 123 WAYVSESSGPSQPLDP 136
            A+V+ +S  +   +P
Sbjct: 291 RAHVAANSASTSVPEP 304

[Close]

BLAST of MELO3C022713.2 vs. TrEMBL
Match: tr|A0A1Q3CGZ4|A0A1Q3CGZ4_CEPFO (UBN2_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22954 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-13
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   EIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILATPNIDFA 62
           E +RIY FL+GLN + D VR  IL  +P+PSL EV+ E+R EE+    +  L T  +   
Sbjct: 132 EKERIYKFLLGLNKELDEVRCRILSTKPLPSLHEVFSEVRREESRMKVMLGLGTTTLTST 191

Query: 63  AFSARSSNSGSD----KHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPNDKQNT 122
             SA ++N G +    +  R   P CE+ ++  HTK+  WKLHG+    K R P ++ N 
Sbjct: 192 ESSALAANRGQNFSNIQQRRNNKPWCEHCRRTGHTKDACWKLHGKPADWKPRTPQERDNR 251

Query: 123 GWAYVSES 127
           G    +E+
Sbjct: 252 GNCATAET 259

[Close]

BLAST of MELO3C022713.2 vs. TrEMBL
Match: tr|A5AYJ3|A5AYJ3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041073 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.8e-13
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 2   EEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAV----SILATP 61
           EE DR+Y FL  LN   D VRG IL ++P+PS+ EV+ E+R EE     +      ++ P
Sbjct: 176 EENDRVYVFLAALNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKVMLTDPEPMSNP 235

Query: 62  NIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKERYWKLHGRSPGGKKRDPND 115
            I+ +A  ++ S+      DR+  P C++ KK WHTK   WK+HG+    KK++ +D
Sbjct: 236 EIESSALVSKGSDLDG---DRRKKPWCDHCKKPWHTKGTCWKIHGKPQNFKKKNGSD 289

The following BLAST results are available for this feature:

BLAST of MELO3C022713.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462481.1	1.3e-43	57.40	PREDICTED: uncharacterized protein LOC103500824 [Cucumis melo]	[more]
XP_010651194.1	2.9e-14	42.11	PREDICTED: uncharacterized protein LOC104879574 isoform X2 [Vitis vinifera]	[more]
XP_019076066.1	2.9e-14	42.11	PREDICTED: uncharacterized protein LOC104879574 isoform X1 [Vitis vinifera]	[more]
XP_024441641.1	6.5e-14	40.35	uncharacterized protein LOC112324187 [Populus trichocarpa]	[more]
XP_024038874.1	1.4e-13	38.52	uncharacterized protein LOC112097724 [Citrus clementina]	[more]

BLAST of MELO3C022713.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C022713.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C022713.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CH25\|A0A1S3CH25_CUCME	8.9e-44	57.40	uncharacterized protein LOC103500824 OS=Cucumis melo OX=3656 GN=LOC103500824 PE=...	[more]
tr\|A0A1U8QBC0\|A0A1U8QBC0_NELNU	1.3e-13	39.67	uncharacterized protein LOC109115911 OS=Nelumbo nucifera OX=4432 GN=LOC109115911...	[more]
tr\|A5BAZ3\|A5BAZ3_VITVI	2.8e-13	36.03	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004170 PE=4 SV=1	[more]
tr\|A0A1Q3CGZ4\|A0A1Q3CGZ4_CEPFO	3.6e-13	37.50	UBN2_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_2...	[more]
tr\|A5AYJ3\|A5AYJ3_VITVI	4.8e-13	38.46	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041073 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022713.2.1	MELO3C022713.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..138
None	No IPR available	PANTHER	PTHR34222:SF2	SUBFAMILY NOT NAMED	coord: 5..110
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 5..110

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022713.2	Cucumber (Chinese Long) v3	cucmedB199
MELO3C022713.2	Watermelon (97103) v2	medwmbB334
MELO3C022713.2	Wax gourd	medwgoB408
MELO3C022713.2	Cucumber (Gy14) v2	cgybmedB174
MELO3C022713.2	Cucumber (Gy14) v1	cgymedB249
MELO3C022713.2	Cucurbita maxima (Rimu)	cmamedB652
MELO3C022713.2	Cucurbita moschata (Rifu)	cmomedB640
MELO3C022713.2	Cucurbita pepo (Zucchini)	cpemedB819
MELO3C022713.2	Wild cucumber (PI 183967)	cpimedB194
MELO3C022713.2	Cucumber (Chinese Long) v2	cumedB194
MELO3C022713.2	Bottle gourd (USVL1VR-Ls)	lsimedB367
MELO3C022713.2	Watermelon (Charleston Gray)	medwcgB339
MELO3C022713.2	Watermelon (97103) v1	medwmB362
MELO3C022713.2	Silver-seed gourd	carmedB0787