MELO3C022687 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022687
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	chr4 : 19813237 .. 19814248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAACCAAATCAGGGACAAGGTCGTAGTGAAAATTTATTTAACAACCAACATGGTGGTCACTGCTCAAGAAATCAAGGAAGAGGCAGAAGTTGGTTTAGGCCCATTTGTCAAGTTTGCACAAAAATTGGTCACACTGCAAATGTCTGCTACAATCAGTTCCATAAGAATTTTGTTTCTAACTTGGGCTCTAATAAAAGAAATAGTGGAAACAATCCTCGCTACAACAATGGCAAAGCTCAAGTAGCCTTGGTGACAGCCAACAGTAACAATCCATTTATTTCTATTAGTGACAATGGCATTGATCCAAACTGGTATACGGACGGCGGAGCAACCAACCATGTGACATCCGAGTACAATAATCTCATGAATCTTGTTGAATACGAAGGTAAGGAATTGGTAACAGTAGGTTGATGGTAGTCAATTTAAAATATCATCGATTAATAATTTAATTCTCTCTAATCGTTCACAAATGTTAAATTTGCATAATGTTCTATATGTTCCTGATATAGCTAAAAGTCAAGTTAGCATATCTAATGTAAATCCGATATTTTTCTTGGATTCTTTGTTATTGTCATGTACTATAGAAACTTGAATTTAAGTTGTTGAAGAAAAATGACAAAGCTTTTGGTTCAGGTTGTGTTAATCATTTTGGAATTTGTTTTATATAAAGAAAAGAAAGGAAAAAGAAAAAGAAGATGAAATTTTGTTTATTATTATTTATATATTTAGGATTAAATAGAAAAAAGGAAAAAAAGATTTTTTTTTAATTGGGATTTAAGTAAAAGGAGGAAAATAAGGAATTCACACTTTTCTCATTCGGTGCATTTTCTTTCAACCTTGTTCTCCATCGCCCGTTTTTCTTCTTCCATTTTTCATCTCTTTTTGTTTATCAACTTCAGAGCTTGTTGAAGGAGGGTTTAGCAAGATTGGAAGCAAAGATTCGACAGTTTGGAGGTTGAAGAAGATAGGAAACCAAAAGCTCAAGTTATTTCTCTTGACAGATTGA

mRNA sequence

ATGAACCAACCAAATCAGGGACAAGGTCGTAGTGAAAATTTATTTAACAACCAACATGGTGGTCACTGCTCAAGAAATCAAGGAAGAGGCAGAAGTTGGTTTAGGCCCATTTGTCAAGTTTGCACAAAAATTGGTCACACTGCAAATGTCTGCTACAATCAGTTCCATAAGAATTTTGTTTCTAACTTGGGCTCTAATAAAAGAAATAGTGGAAACAATCCTCGCTACAACAATGGCAAAGCTCAAGTAGCCTTGGTGACAGCCAACAGTAACAATCCATTTATTTCTATTAGTGACAATGGCATTGATCCAAACTGGTATACGGACGGCGGAGCAACCAACCATGTGACATCCGAGTACAATAATCTCATGAATCTTGTTGAATACGAAGAGCTTGTTGAAGGAGGGTTTAGCAAGATTGGAAGCAAAGATTCGACAGTTTGGAGGTTGAAGAAGATAGGAAACCAAAAGCTCAAGTTATTTCTCTTGACAGATTGA

Coding sequence (CDS)

ATGAACCAACCAAATCAGGGACAAGGTCGTAGTGAAAATTTATTTAACAACCAACATGGTGGTCACTGCTCAAGAAATCAAGGAAGAGGCAGAAGTTGGTTTAGGCCCATTTGTCAAGTTTGCACAAAAATTGGTCACACTGCAAATGTCTGCTACAATCAGTTCCATAAGAATTTTGTTTCTAACTTGGGCTCTAATAAAAGAAATAGTGGAAACAATCCTCGCTACAACAATGGCAAAGCTCAAGTAGCCTTGGTGACAGCCAACAGTAACAATCCATTTATTTCTATTAGTGACAATGGCATTGATCCAAACTGGTATACGGACGGCGGAGCAACCAACCATGTGACATCCGAGTACAATAATCTCATGAATCTTGTTGAATACGAAGAGCTTGTTGAAGGAGGGTTTAGCAAGATTGGAAGCAAAGATTCGACAGTTTGGAGGTTGAAGAAGATAGGAAACCAAAAGCTCAAGTTATTTCTCTTGACAGATTGA

Protein sequence

MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD*

Homology

[Close]

BLAST of MELO3C022687 vs. TrEMBL
Match: A0A151U7R7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008029 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 1


Query: 5   NQGQGRSENLFNNQHGGHCSRNQGRGR-SWFRPICQVCTKIGHTANVCYNQFHKNFVSNL 64
           N+G  R  N F    GG     +GRGR S  +P CQVC KIGH A  C+ +F K+++   
Sbjct: 148 NRGSWRGNN-FRGTRGG-----RGRGRLSRDKPTCQVCEKIGHIAVQCFYRFDKSYMGQS 207

Query: 65  GSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGI-DPNWYTDGGATNHVTSEYNN 124
             +K+   N        A +A       +P  + S N I DP WY D GA+NHVT + N 
Sbjct: 208 SDDKQEKHN--------AFIA-------SPNFNASSNSIRDPEWYFDSGASNHVTHDPNQ 254

Query: 125 LMNLVEYE 131
              + E++
Sbjct: 268 FQEISEHD 254

[Close]

BLAST of MELO3C022687 vs. TrEMBL
Match: A0A151SEF4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024838 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1


Query: 5   NQGQGRSENLFNNQHGGHCSRNQGRGRS------WFRPICQVCTKIGHTANVCYNQFHKN 64
           NQG+G + N     HG    R +GRGRS        +  CQVC KIGH A  C++++ + 
Sbjct: 103 NQGRGSNNN---GTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 162

Query: 65  FVS---NLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNH 124
           +     N  +N  N GN  +        A++  + N  +        D  WY D GATNH
Sbjct: 163 YTEPNLNHNTNVYNPGNQQQMQ------AMIAGSQNMVY--------DDQWYPDSGATNH 219

Query: 125 VTSEYNNLMNLVEY 130
           +TS+ NNL +  +Y
Sbjct: 223 LTSDLNNLGSKTDY 219

[Close]

BLAST of MELO3C022687 vs. TrEMBL
Match: A0A151U9E7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_020152 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1


Query: 5   NQGQGRSENLFNNQHGGHCSRNQGRGRS------WFRPICQVCTKIGHTANVCYNQFHKN 64
           NQG+G + N     HG    R +GRGRS        +  CQVC KIGH A  C++++ + 
Sbjct: 237 NQGRGSNNN---GTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 296

Query: 65  FVS---NLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNH 124
           +     N  +N  N GN  +        A++  + N  +        D  WY D GATNH
Sbjct: 297 YTEPNLNHNTNVYNPGNQQQMQ------AMIAGSQNMVY--------DDQWYPDSGATNH 353

Query: 125 VTSEYNNLMNLVEY 130
           +TS+ NNL +  +Y
Sbjct: 357 LTSDLNNLGSKTDY 353

[Close]

BLAST of MELO3C022687 vs. TrEMBL
Match: A5AG09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002117 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 44/139 (31.65%), Postives = 62/139 (44.60%), Query Frame = 1


Query: 4   PNQGQGRSENLFNNQHGGHCSRNQGRGRSWF-----------RPICQVCTKIGHTANVCY 63
           PN G+G       +   G    N G  RSW            +P+CQVC KIGH+A+ CY
Sbjct: 237 PNFGRGNFSPRGRDGFQGRGGFNNGGWRSWNTWNNNATANAEKPVCQVCMKIGHSADRCY 296

Query: 64  NQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISIS--DNGIDPNWYTDG 123
            ++  +F           G  P +     Q  +   N  N  + ++  +N  D NWY D 
Sbjct: 297 YRYDPSF-----QGPHTPGFTPSFQKSP-QTQIQGGNKPNMQVLMATPENICDTNWYPDS 356

Query: 124 GATNHVTSEYNNLMNLVEY 130
           GA+NHVT+  NNL+    Y
Sbjct: 357 GASNHVTTNANNLVEHTPY 369

[Close]

BLAST of MELO3C022687 vs. TrEMBL
Match: A5BFR8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012106 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 1


Query: 6   QGQGRSENLFNNQHGGHCSRNQGRGRSWF----RPICQVCTKIGHTANVCYNQFHKNFVS 65
           QG   + N +  +  G   RN   GR       +P CQ+C K GHTA +CY++F  +F  
Sbjct: 253 QGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDISFQG 312

Query: 66  NLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYN 125
              +   +S NN   NN  A VA           S S+N  D +WY D GA++H+T    
Sbjct: 313 G-QTTISHSLNNGNQNNIPAMVA-----------SASNNPADESWYLDSGASHHLTQNLG 372

Query: 126 NLMNLVEY---EELVEG-----GFSKIGSKD----STVWRLKKI 154
           NL +   Y   +++  G       S IGSK     +  +RLKK+
Sbjct: 373 NLTSTSPYTGTDKVTIGNGKHLSISNIGSKQLHSHTHSFRLKKV 404

[Close]

BLAST of MELO3C022687 vs. NCBI nr
Match: gi|1012364125|gb|KYP75308.1| (hypothetical protein KK1_008029 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 1


Query: 5   NQGQGRSENLFNNQHGGHCSRNQGRGR-SWFRPICQVCTKIGHTANVCYNQFHKNFVSNL 64
           N+G  R  N F    GG     +GRGR S  +P CQVC KIGH A  C+ +F K+++   
Sbjct: 148 NRGSWRGNN-FRGTRGG-----RGRGRLSRDKPTCQVCEKIGHIAVQCFYRFDKSYMGQS 207

Query: 65  GSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGI-DPNWYTDGGATNHVTSEYNN 124
             +K+   N        A +A       +P  + S N I DP WY D GA+NHVT + N 
Sbjct: 208 SDDKQEKHN--------AFIA-------SPNFNASSNSIRDPEWYFDSGASNHVTHDPNQ 254

Query: 125 LMNLVEYE 131
              + E++
Sbjct: 268 FQEISEHD 254

[Close]

BLAST of MELO3C022687 vs. NCBI nr
Match: gi|659071665|ref|XP_008461310.1| (PREDICTED: uncharacterized protein LOC103499934 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1


Query: 11  SENLFNNQHGGHCSRNQGRGRS-------WFRPICQVCTKIGHTANVCYNQFHKNFVSNL 70
           S+N ++N H  +   ++G GRS         +P CQ+CTK+GH+A+ C+ ++     SN 
Sbjct: 47  SQNNYHNNHSYNQRGDRGNGRSNRGGRGNLNKPQCQICTKLGHSADRCFFRYTPR--SNS 106

Query: 71  GSNKRNSGNNPRYN-NGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYNN 130
                NS N    N N   Q++   A+         D  ID NWY D GATNH+T   +N
Sbjct: 107 SGYSPNSHNTSYTNMNNHPQMSATVAS--------PDLNIDSNWYPDSGATNHLTYSLSN 163

[Close]

BLAST of MELO3C022687 vs. NCBI nr
Match: gi|1012342015|gb|KYP53212.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1


Query: 5   NQGQGRSENLFNNQHGGHCSRNQGRGRS------WFRPICQVCTKIGHTANVCYNQFHKN 64
           NQG+G + N     HG    R +GRGRS        +  CQVC KIGH A  C++++ + 
Sbjct: 103 NQGRGSNNN---GTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 162

Query: 65  FVS---NLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNH 124
           +     N  +N  N GN  +        A++  + N  +        D  WY D GATNH
Sbjct: 163 YTEPNLNHNTNVYNPGNQQQMQ------AMIAGSQNMVY--------DDQWYPDSGATNH 219

Query: 125 VTSEYNNLMNLVEY 130
           +TS+ NNL +  +Y
Sbjct: 223 LTSDLNNLGSKTDY 219

[Close]

BLAST of MELO3C022687 vs. NCBI nr
Match: gi|1012364758|gb|KYP75940.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1


Query: 5   NQGQGRSENLFNNQHGGHCSRNQGRGRS------WFRPICQVCTKIGHTANVCYNQFHKN 64
           NQG+G + N     HG    R +GRGRS        +  CQVC KIGH A  C++++ + 
Sbjct: 237 NQGRGSNNN---GTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 296

Query: 65  FVS---NLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNH 124
           +     N  +N  N GN  +        A++  + N  +        D  WY D GATNH
Sbjct: 297 YTEPNLNHNTNVYNPGNQQQMQ------AMIAGSQNMVY--------DDQWYPDSGATNH 353

Query: 125 VTSEYNNLMNLVEY 130
           +TS+ NNL +  +Y
Sbjct: 357 LTSDLNNLGSKTDY 353

[Close]

BLAST of MELO3C022687 vs. NCBI nr
Match: gi|147765746|emb|CAN60188.1| (hypothetical protein VITISV_002117 [Vitis vinifera])

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 44/139 (31.65%), Postives = 62/139 (44.60%), Query Frame = 1


Query: 4   PNQGQGRSENLFNNQHGGHCSRNQGRGRSWF-----------RPICQVCTKIGHTANVCY 63
           PN G+G       +   G    N G  RSW            +P+CQVC KIGH+A+ CY
Sbjct: 237 PNFGRGNFSPRGRDGFQGRGGFNNGGWRSWNTWNNNATANAEKPVCQVCMKIGHSADRCY 296

Query: 64  NQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISIS--DNGIDPNWYTDG 123
            ++  +F           G  P +     Q  +   N  N  + ++  +N  D NWY D 
Sbjct: 297 YRYDPSF-----QGPHTPGFTPSFQKSP-QTQIQGGNKPNMQVLMATPENICDTNWYPDS 356

Query: 124 GATNHVTSEYNNLMNLVEY 130
           GA+NHVT+  NNL+    Y
Sbjct: 357 GASNHVTTNANNLVEHTPY 369

The following BLAST results are available for this feature:

BLAST of MELO3C022687 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151U7R7_CAJCA	2.9e-09	35.94	Uncharacterized protein OS=Cajanus cajan GN=KK1_008029 PE=4 SV=1	[more]
A0A151SEF4_CAJCA	3.8e-09	33.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151U9E7_CAJCA	3.8e-09	33.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A5AG09_VITVI	4.9e-09	31.65	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002117 PE=4 SV=1	[more]
A5BFR8_VITVI	1.1e-08	32.32	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012106 PE=4 SV=1	[more]

BLAST of MELO3C022687 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012364125\|gb\|KYP75308.1\|	4.2e-09	35.94	hypothetical protein KK1_008029 [Cajanus cajan]	[more]
gi\|659071665\|ref\|XP_008461310.1\|	4.2e-09	34.65	PREDICTED: uncharacterized protein LOC103499934 [Cucumis melo]	[more]
gi\|1012342015\|gb\|KYP53212.1\|	5.4e-09	33.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012364758\|gb\|KYP75940.1\|	5.4e-09	33.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|147765746\|emb\|CAN60188.1\|	7.1e-09	31.65	hypothetical protein VITISV_002117 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022687T1	MELO3C022687T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022687	Silver-seed gourd	carmeB0123
MELO3C022687	Silver-seed gourd	carmeB0207
MELO3C022687	Silver-seed gourd	carmeB0606
MELO3C022687	Silver-seed gourd	carmeB0763
MELO3C022687	Cucumber (Chinese Long) v3	cucmeB208
MELO3C022687	Cucumber (Chinese Long) v3	cucmeB573
MELO3C022687	Watermelon (97103) v2	mewmbB350
MELO3C022687	Watermelon (97103) v2	mewmbB360
MELO3C022687	Wax gourd	mewgoB398
MELO3C022687	Wax gourd	mewgoB438
MELO3C022687	Melon (DHL92) v3.5.1	memeB087
MELO3C022687	Cucumber (Gy14) v1	cgymeB252
MELO3C022687	Cucumber (Gy14) v1	cgymeB583
MELO3C022687	Cucurbita maxima (Rimu)	cmameB227
MELO3C022687	Cucurbita maxima (Rimu)	cmameB334
MELO3C022687	Cucurbita maxima (Rimu)	cmameB420
MELO3C022687	Cucurbita maxima (Rimu)	cmameB841
MELO3C022687	Cucurbita moschata (Rifu)	cmomeB211
MELO3C022687	Cucurbita moschata (Rifu)	cmomeB327
MELO3C022687	Cucurbita moschata (Rifu)	cmomeB410
MELO3C022687	Cucurbita moschata (Rifu)	cmomeB825
MELO3C022687	Wild cucumber (PI 183967)	cpimeB202
MELO3C022687	Wild cucumber (PI 183967)	cpimeB562
MELO3C022687	Cucumber (Chinese Long) v2	cumeB209
MELO3C022687	Cucumber (Chinese Long) v2	cumeB555
MELO3C022687	Watermelon (Charleston Gray)	mewcgB308
MELO3C022687	Watermelon (Charleston Gray)	mewcgB347
MELO3C022687	Watermelon (97103) v1	mewmB338
MELO3C022687	Watermelon (97103) v1	mewmB358
MELO3C022687	Cucurbita pepo (Zucchini)	cpemeB134
MELO3C022687	Cucurbita pepo (Zucchini)	cpemeB307
MELO3C022687	Cucurbita pepo (Zucchini)	cpemeB524
MELO3C022687	Cucurbita pepo (Zucchini)	cpemeB568
MELO3C022687	Bottle gourd (USVL1VR-Ls)	lsimeB217
MELO3C022687	Bottle gourd (USVL1VR-Ls)	lsimeB438
MELO3C022687	Cucumber (Gy14) v2	cgybmeB174
MELO3C022687	Cucumber (Gy14) v2	cgybmeB491