MELO3C022573.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022573.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	flocculation protein FLO11-like
Location	chr10 : 16043905 .. 16044713 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCTCACCACAAAAAACTGCAACTTCTTTGAAGGACAAACGCTACAAAGGAATCCCAACAAAACATCCATATAAGAAAATTCGCATGTCTGCTCCGCCTATTGAGGAAGGTCAACACTGTTCAGTACCCATCCCTGTCCATTGCTCACATGTAGGCCAATCTTCTAAACCATTATCTTCTGTTACTGTCAAAAGGGAAGTCCCTGAGTTTTGTCCACCACGCGCATCCCGACCGTCTGCGTCCTCCTCTGTACCAAAACCTAGGGTTTCTGTTGAGACAGTGGTTATAGATTTTGACTCCTTTGACAGTGAAGACAATGTGGTTTTGTCATCCCTTCTCCATTGCAAGGTAGGGTCTCGTTCTGGTCAATCCCCACCAAGGGAAGCATATCCTCTTAAGGAGGATCTGTCTCGGCCTACTGACCAGGTCATTCTTTAGCTGCTCCATCATCACCTCATGCTTCCCCACAAGCTTCTCTTTCAACTGATGAAGACGATGCAAGTAACAAAACTGACGAAGATTATGTACCTAGAACTGAAGAAACAACTGTACTTGAGGACTCTTCGACATCTACTGAGGATCTTAGTGTATCCCATGGTACTCGGATGTCGGAACCTAGGTTAACTAAAGGCCCGGATGAATTCTTCACTCCGATGTCACGTCCTGGGCATGTTGGTTCCTCCTTTAGTCTACGTCGTCTTCCTGTCAGAGGACAACGTGTCGTCTCAACCAAGGCAGGACAAAGGAAGATACCCCCACATGTACCCTCTGTGTCAATTGATGGTGTGTCTTTTCACTCTAAG

mRNA sequence

ATGGCTCCCTCACCACAAAAAACTGCAACTTCTTTGAAGGACAAACGCTACAAAGGAATCCCAACAAAACATCCATATAAGAAAATTCGCATGTCTGCTCCGCCTATTGAGGAAGGTCAACACTGTTCAGTACCCATCCCTGTCCATTGCTCACATGTAGGCCAATCTTCTAAACCATTATCTTCTGTTACTGTCAAAAGGGAAGTCCCTGAGTTTTGTCCACCACGCGCATCCCGACCGTCTGCGTCCTCCTCTGTACCAAAACCTAGGGTTTCTGTTGAGACAGTGGTTATAGATTTTGACTCCTTTGACAGTGAAGACAATGTGGTTTTGTCATCCCTTCTCCATTGCAAGGTAGGGTCTCGTTCTGGTCAATCCCCACCAAGGGAAGCATATCCTCTTAAGGAGGATCTGTCTCGGCCTACTGACCAGGTCATTCTTTAGCTGCTCCATCATCACCTCATGCTTCCCCACAAGCTTCTCTTTCAACTGATGAAGACGATGCAAGTAACAAAACTGACGAAGATTATGTACCTAGAACTGAAGAAACAACTGTACTTGAGGACTCTTCGACATCTACTGAGGATCTTAGTGTATCCCATGGTACTCGGATGTCGGAACCTAGGTTAACTAAAGGCCCGGATGAATTCTTCACTCCGATGTCACGTCCTGGGCATGTTGGTTCCTCCTTTAGTCTACGTCGTCTTCCTGTCAGAGGACAACGTGTCGTCTCAACCAAGGCAGGACAAAGGAAGATACCCCCACATGTACCCTCTGTGTCAATTGATGGTGTGTCTTTTCACTCTAAG

Coding sequence (CDS)

ATGGCTCCCTCACCACAAAAAACTGCAACTTCTTTGAAGGACAAACGCTACAAAGGAATCCCAACAAAACATCCATATAAGAAAATTCGCATGTCTGCTCCGCCTATTGAGGAAGGTCAACACTGTTCAGTACCCATCCCTGTCCATTGCTCACATGTAGGCCAATCTTCTAAACCATTATCTTCTGTTACTGTCAAAAGGGAAGTCCCTGAGTTTTGTCCACCACGCGCATCCCGACCGTCTGCGTCCTCCTCTGTACCAAAACCTAGGGTTTCTGTTGAGACAGTGGTTATAGATTTTGACTCCTTTGACAGTGAAGACAATGTGGTTTTGTCATCCCTTCTCCATTGCAAGGTAGGGTCTCGTTCTGGTCAATCCCCACCAAGGGAAGCATATCCTCTTAAGGAGGATCTGTCTCGGCCTACTGACCAGGTCATTCTTTAG

Protein sequence

MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPLSSVTVKREVPEFCPPRASRPSASSSVPKPRVSVETVVIDFDSFDSEDNVVLSSLLHCKVGSRSGQSPPREAYPLKEDLSRPTDQVIL

Homology

[Close]

BLAST of MELO3C022573.2 vs. NCBI nr
Match: XP_008441642.1 (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 98/148 (66.22%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           MA SP KT TS K KRYKGIPTKHPYKKI  S PP EEGQHC VPIPVHCSH G SS P 
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVPKPRVSVETVVIDFDSFDSEDNVVLSSLLHCKVG 120
           S +TVK+EVPEF PPR S  S SSSVP+PRVS+ETVV+D DS DS+DNVVLS+LLH K  
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRK-S 281

Query: 121 SRSGQSP---PREAYPLKE-DLSRPTDQ 145
           S +  SP   P+ + P  E D S  TD+
Sbjct: 282 SAAPSSPHAFPQASLPTNEDDASDETDE 308

[Close]

BLAST of MELO3C022573.2 vs. NCBI nr
Match: XP_008457140.1 (PREDICTED: flocculation protein FLO11-like [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 75/132 (56.82%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M P+  K+ TS K KRYKGI TKHPYKK+R S   I  G++ +VP P H SHV +S+ P 
Sbjct: 28  MDPTASKSTTSSKGKRYKGISTKHPYKKVRKS---ISSGEYSTVPSPAHSSHVERSANPP 87

Query: 61  SSVTVKREVPEFCPPRASRPSASSSV------PKPRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VTVK EV EF  P+++RPS SSSV      P+PRVSVETVV+DF+S DS+DNV+LS+L
Sbjct: 88  SPVTVKEEVLEFSSPQSARPSVSSSVSKLPSRPEPRVSVETVVLDFNSSDSDDNVILSTL 147

Query: 121 LHCKVGSRSGQS 127
           LH    +RS Q+
Sbjct: 148 LHRTRSTRSNQT 156

[Close]

BLAST of MELO3C022573.2 vs. NCBI nr
Match: XP_008459271.1 (PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 76/142 (53.52%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M P+  K  TS K KRYKGIPTKHPYKK+R S   I  G++ +V  P H S+  +S+ P 
Sbjct: 28  MDPTAPKLITSSKGKRYKGIPTKHPYKKVRKS---ILSGEYSTVSSPAHSSYAERSANPP 87

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVPK------PRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VTVK EV EF  P++  PS SSSVPK      PRVSVETVV+D DS DS+DNV+LS+L
Sbjct: 88  SPVTVKEEVLEFSSPQSVHPSVSSSVPKSLSRPEPRVSVETVVLDSDSSDSDDNVILSTL 147

Query: 121 LHCKVGSRSGQ--SPPR-EAYP 134
           LH    +R+ Q  SP + +A+P
Sbjct: 148 LHRTRSARNNQTTSPAKPQAFP 166

[Close]

BLAST of MELO3C022573.2 vs. NCBI nr
Match: XP_016901851.1 (PREDICTED: uncharacterized protein LOC107991438 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M P+  K+ TS K KRYKGI TKHPYKK+  S P    G++ +V  P H SH   S+ PL
Sbjct: 1   MDPTAPKSTTSSKGKRYKGISTKHPYKKVCKSIP---SGEYNTVSSPEHSSHAEGSTNPL 60

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVP------KPRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VT K EV EF  P+++RPS SSSVP      K RVSVETVV+D DS  S+DNV+LS+L
Sbjct: 61  SPVTAKEEVLEFSSPQSARPSVSSSVPKSSXXXKSRVSVETVVLDSDSSASDDNVILSTL 120

Query: 121 LHCKVGSRSGQS 127
           LH    +RS Q+
Sbjct: 121 LHRTRSARSNQT 129

[Close]

BLAST of MELO3C022573.2 vs. NCBI nr
Match: XP_008463038.1 (PREDICTED: flocculation protein FLO11-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 4.3e-22
Identity = 67/132 (50.76%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M  +  K+ T  K KRYKGIPTKH YKK+R S P    G++ +VP P H S+  +   P 
Sbjct: 1   MDTAAAKSTTFSKGKRYKGIPTKHLYKKVRKSIP---SGENSAVPSPEHSSNAERLENPP 60

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVPK------PRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VTVK EV EF  P+++ PS S S+PK      PRVSVETV++D DS +SEDN+VLS+L
Sbjct: 61  SPVTVKEEVLEFSSPQSALPSVSLSIPKSSSRPEPRVSVETVILDSDSSNSEDNIVLSTL 120

Query: 121 LHCKVGSRSGQS 127
           LH     RS Q+
Sbjct: 121 LHRTRSVRSNQT 129

[Close]

BLAST of MELO3C022573.2 vs. TrEMBL
Match: tr|A0A1S3B3W2|A0A1S3B3W2_CUCME (uncharacterized protein LOC103485722 OS=Cucumis melo OX=3656 GN=LOC103485722 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.4e-42
Identity = 98/148 (66.22%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           MA SP KT TS K KRYKGIPTKHPYKKI  S PP EEGQHC VPIPVHCSH G SS P 
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVPKPRVSVETVVIDFDSFDSEDNVVLSSLLHCKVG 120
           S +TVK+EVPEF PPR S  S SSSVP+PRVS+ETVV+D DS DS+DNVVLS+LLH K  
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRK-S 281

Query: 121 SRSGQSP---PREAYPLKE-DLSRPTDQ 145
           S +  SP   P+ + P  E D S  TD+
Sbjct: 282 SAAPSSPHAFPQASLPTNEDDASDETDE 308

[Close]

BLAST of MELO3C022573.2 vs. TrEMBL
Match: tr|A0A1S3C4X0|A0A1S3C4X0_CUCME (flocculation protein FLO11-like OS=Cucumis melo OX=3656 GN=LOC103496886 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.2e-29
Identity = 75/132 (56.82%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M P+  K+ TS K KRYKGI TKHPYKK+R S   I  G++ +VP P H SHV +S+ P 
Sbjct: 28  MDPTASKSTTSSKGKRYKGISTKHPYKKVRKS---ISSGEYSTVPSPAHSSHVERSANPP 87

Query: 61  SSVTVKREVPEFCPPRASRPSASSSV------PKPRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VTVK EV EF  P+++RPS SSSV      P+PRVSVETVV+DF+S DS+DNV+LS+L
Sbjct: 88  SPVTVKEEVLEFSSPQSARPSVSSSVSKLPSRPEPRVSVETVVLDFNSSDSDDNVILSTL 147

Query: 121 LHCKVGSRSGQS 127
           LH    +RS Q+
Sbjct: 148 LHRTRSTRSNQT 156

[Close]

BLAST of MELO3C022573.2 vs. TrEMBL
Match: tr|A0A1S3C9T5|A0A1S3C9T5_CUCME (uncharacterized protein LOC103498446 OS=Cucumis melo OX=3656 GN=LOC103498446 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.3e-26
Identity = 76/142 (53.52%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M P+  K  TS K KRYKGIPTKHPYKK+R S   I  G++ +V  P H S+  +S+ P 
Sbjct: 28  MDPTAPKLITSSKGKRYKGIPTKHPYKKVRKS---ILSGEYSTVSSPAHSSYAERSANPP 87

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVPK------PRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VTVK EV EF  P++  PS SSSVPK      PRVSVETVV+D DS DS+DNV+LS+L
Sbjct: 88  SPVTVKEEVLEFSSPQSVHPSVSSSVPKSLSRPEPRVSVETVVLDSDSSDSDDNVILSTL 147

Query: 121 LHCKVGSRSGQ--SPPR-EAYP 134
           LH    +R+ Q  SP + +A+P
Sbjct: 148 LHRTRSARNNQTTSPAKPQAFP 166

[Close]

BLAST of MELO3C022573.2 vs. TrEMBL
Match: tr|A0A1S4E0U5|A0A1S4E0U5_CUCME (uncharacterized protein LOC107991438 OS=Cucumis melo OX=3656 GN=LOC107991438 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-24
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M P+  K+ TS K KRYKGI TKHPYKK+  S P    G++ +V  P H SH   S+ PL
Sbjct: 1   MDPTAPKSTTSSKGKRYKGISTKHPYKKVCKSIP---SGEYNTVSSPEHSSHAEGSTNPL 60

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVP------KPRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VT K EV EF  P+++RPS SSSVP      K RVSVETVV+D DS  S+DNV+LS+L
Sbjct: 61  SPVTAKEEVLEFSSPQSARPSVSSSVPKSSXXXKSRVSVETVVLDSDSSASDDNVILSTL 120

Query: 121 LHCKVGSRSGQS 127
           LH    +RS Q+
Sbjct: 121 LHRTRSARSNQT 129

[Close]

BLAST of MELO3C022573.2 vs. TrEMBL
Match: tr|A0A1S3CIA4|A0A1S3CIA4_CUCME (flocculation protein FLO11-like OS=Cucumis melo OX=3656 GN=LOC103501277 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.9e-22
Identity = 67/132 (50.76%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 1   MAPSPQKTATSLKDKRYKGIPTKHPYKKIRMSAPPIEEGQHCSVPIPVHCSHVGQSSKPL 60
           M  +  K+ T  K KRYKGIPTKH YKK+R S P    G++ +VP P H S+  +   P 
Sbjct: 1   MDTAAAKSTTFSKGKRYKGIPTKHLYKKVRKSIP---SGENSAVPSPEHSSNAERLENPP 60

Query: 61  SSVTVKREVPEFCPPRASRPSASSSVPK------PRVSVETVVIDFDSFDSEDNVVLSSL 120
           S VTVK EV EF  P+++ PS S S+PK      PRVSVETV++D DS +SEDN+VLS+L
Sbjct: 61  SPVTVKEEVLEFSSPQSALPSVSLSIPKSSSRPEPRVSVETVILDSDSSNSEDNIVLSTL 120

Query: 121 LHCKVGSRSGQS 127
           LH     RS Q+
Sbjct: 121 LHRTRSVRSNQT 129

The following BLAST results are available for this feature:

BLAST of MELO3C022573.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441642.1	1.4e-41	66.22	PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo]	[more]
XP_008457140.1	1.4e-28	56.82	PREDICTED: flocculation protein FLO11-like [Cucumis melo]	[more]
XP_008459271.1	1.1e-25	53.52	PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo]	[more]
XP_016901851.1	4.6e-24	53.79	PREDICTED: uncharacterized protein LOC107991438 [Cucumis melo]	[more]
XP_008463038.1	4.3e-22	50.76	PREDICTED: flocculation protein FLO11-like [Cucumis melo]	[more]

BLAST of MELO3C022573.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C022573.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C022573.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B3W2\|A0A1S3B3W2_CUCME	9.4e-42	66.22	uncharacterized protein LOC103485722 OS=Cucumis melo OX=3656 GN=LOC103485722 PE=...	[more]
tr\|A0A1S3C4X0\|A0A1S3C4X0_CUCME	9.2e-29	56.82	flocculation protein FLO11-like OS=Cucumis melo OX=3656 GN=LOC103496886 PE=4 SV=...	[more]
tr\|A0A1S3C9T5\|A0A1S3C9T5_CUCME	7.3e-26	53.52	uncharacterized protein LOC103498446 OS=Cucumis melo OX=3656 GN=LOC103498446 PE=...	[more]
tr\|A0A1S4E0U5\|A0A1S4E0U5_CUCME	3.1e-24	53.79	uncharacterized protein LOC107991438 OS=Cucumis melo OX=3656 GN=LOC107991438 PE=...	[more]
tr\|A0A1S3CIA4\|A0A1S3CIA4_CUCME	2.9e-22	50.76	flocculation protein FLO11-like OS=Cucumis melo OX=3656 GN=LOC103501277 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022573.2.1	MELO3C022573.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..147

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022573.2	Cucumber (Gy14) v2	cgybmedB311
MELO3C022573.2	Cucumber (Gy14) v1	cgymedB459
MELO3C022573.2	Cucurbita maxima (Rimu)	cmamedB734
MELO3C022573.2	Cucurbita moschata (Rifu)	cmomedB729
MELO3C022573.2	Cucurbita pepo (Zucchini)	cpemedB430
MELO3C022573.2	Wild cucumber (PI 183967)	cpimedB365
MELO3C022573.2	Cucumber (Chinese Long) v2	cumedB360
MELO3C022573.2	Bottle gourd (USVL1VR-Ls)	lsimedB088
MELO3C022573.2	Watermelon (Charleston Gray)	medwcgB044
MELO3C022573.2	Watermelon (97103) v1	medwmB077
MELO3C022573.2	Silver-seed gourd	carmedB0669
MELO3C022573.2	Cucumber (Chinese Long) v3	cucmedB363
MELO3C022573.2	Watermelon (97103) v2	medwmbB044