MELO3C022544 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022544
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RAF proto-oncogene serine/threonine-protein kinase
Location	chr10 : 14457428 .. 14457664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGCTTCGCTAAGTTAAGTGAGAGAGTTAAGGATATGGCAGCAAAGAACAAGGCCACCGAAAAACAAGAAGTAGACTGCCTTGAGGTTGTGGCGAAAGAATTCACAGAAGAAATTGAGAATATGAGTCTATTAGAGACAAGGCTATCGCCTGAAGAACCTAAACTAAGAGAAGCCGCCCAACCTAAGAAAATCGAAAGCAAGTCTGGGACATCAAGACCTAGGGATGCCTAG

mRNA sequence

ATGGGGAGCTTCGCTAAGTTAAGTGAGAGAGTTAAGGATATGGCAGCAAAGAACAAGGCCACCGAAAAACAAGAAGTAGACTGCCTTGAGGTTGTGGCGAAAGAATTCACAGAAGAAATTGAGAATATGAGTCTATTAGAGACAAGGCTATCGCCTGAAGAACCTAAACTAAGAGAAGCCGCCCAACCTAAGAAAATCGAAAGCAAGTCTGGGACATCAAGACCTAGGGATGCCTAG

Coding sequence (CDS)

ATGGGGAGCTTCGCTAAGTTAAGTGAGAGAGTTAAGGATATGGCAGCAAAGAACAAGGCCACCGAAAAACAAGAAGTAGACTGCCTTGAGGTTGTGGCGAAAGAATTCACAGAAGAAATTGAGAATATGAGTCTATTAGAGACAAGGCTATCGCCTGAAGAACCTAAACTAAGAGAAGCCGCCCAACCTAAGAAAATCGAAAGCAAGTCTGGGACATCAAGACCTAGGGATGCCTAG

Protein sequence

MGSFAKLSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKIESKSGTSRPRDA*

Homology

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BLAST of MELO3C022544 vs. NCBI nr
Match: gi|659102436|ref|XP_008452128.1| (PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-11
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 5   AKLSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPK 64
           AK  ++V+ +  KN+ATE Q+V+CLEVVA EF EE+ N+S L+ RLSPE   LR     K
Sbjct: 60  AKFDDQVEGLEMKNEATENQKVNCLEVVAAEFQEEVPNISPLKPRLSPEASGLRAIKTKK 119

Query: 65  KIESKSGTSRPRDA 79
             ++K GTS+P+DA
Sbjct: 120 TKKTKPGTSKPKDA 133

The following BLAST results are available for this feature:

BLAST of MELO3C022544 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102436\|ref\|XP_008452128.1\|	4.7e-11	51.35	PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022544T1	MELO3C022544T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..24 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022544	Cucumber (Gy14) v1	cgymeB463
MELO3C022544	Wild cucumber (PI 183967)	cpimeB372
MELO3C022544	Cucumber (Chinese Long) v2	cumeB344
MELO3C022544	Watermelon (Charleston Gray)	mewcgB044
MELO3C022544	Watermelon (97103) v1	mewmB078
MELO3C022544	Bottle gourd (USVL1VR-Ls)	lsimeB083
MELO3C022544	Cucumber (Gy14) v2	cgybmeB312
MELO3C022544	Cucumber (Chinese Long) v3	cucmeB372
MELO3C022544	Watermelon (97103) v2	mewmbB048