MELO3C022542 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022542
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative Myb family transcription factor
Locationchr10 : 14441924 .. 14442256 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTAATAGTTGTGGAAGAAATGGAAGTGTAAGACAATACATTAGATCCAAAGTCCCAAGATTAAGATGGACTCCTGATCTTCATCATTCCTTTGTTCTTGCCATTGAAAGACTCGGTGGCCATCAAAGTATGCCCTTTTTTTCTTTCTTTTTTTCGTTCTTTTTTTTCTTTTTTTTTTTTATTAAGATAAGATTTATGTTTCTTATTTTTATTTTTTTGGAATTGTTAGAGGCAACCCCTAAGCTTGTTCTACAGCTCATGGATGTGAAAGGACTCACCATTTCACACGTAAAGAGCCATCTTCAGGTCTTCTTTTTTTTCTTTTAA

mRNA sequence

ATGAGTAGTAATAGTTGTGGAAGAAATGGAAGTGTAAGACAATACATTAGATCCAAAGTCCCAAGATTAAGATGGACTCCTGATCTTCATCATTCCTTTGTTCTTGCCATTGAAAGACTCGGTGGCCATCAAAAGGCAACCCCTAAGCTTGTTCTACAGCTCATGGATGTGAAAGGACTCACCATTTCACACGTAAAGAGCCATCTTCAGGTCTTCTTTTTTTTCTTTTAA

Coding sequence (CDS)

ATGAGTAGTAATAGTTGTGGAAGAAATGGAAGTGTAAGACAATACATTAGATCCAAAGTCCCAAGATTAAGATGGACTCCTGATCTTCATCATTCCTTTGTTCTTGCCATTGAAAGACTCGGTGGCCATCAAAAGGCAACCCCTAAGCTTGTTCTACAGCTCATGGATGTGAAAGGACTCACCATTTCACACGTAAAGAGCCATCTTCAGGTCTTCTTTTTTTTCTTTTAA

Protein sequence

MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQVFFFFF*
Homology
[Close]
BLAST of MELO3C022542 vs. Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 7.5e-22
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 

Query: 6  CGRN-----GSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 65
          CGR+     G VR Y+RS VPRLRWTP+LH SFV A++ LGG  KATPKLVL++MDVKGL
Sbjct: 4  CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query: 66 TISHVKSHLQVF 73
          TISHVKSHLQ++
Sbjct: 64 TISHVKSHLQMY 75

[Close]
BLAST of MELO3C022542 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 19  KVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQVF 73
           + PR+RWT  LH  FV A+E LGGH++ATPK VL+LMDVK LT++HVKSHLQ++
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 271

[Close]
BLAST of MELO3C022542 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 19  KVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQVF 73
           + PR+RWT  LH  FV A+E LGGH++ATPK VL+LMDVK LT++HVKSHLQ++
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 376

[Close]
BLAST of MELO3C022542 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 19  KVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQVF 73
           + PR+RWT  LH  FV A+E LGGH++ATPK VL+LMDVK LT++HVKSHLQ++
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]
BLAST of MELO3C022542 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.6e-14
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 2   SSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLT 61
           SS+  G   S+R       PR+RWT  LH  FV A++ LGGH++ATPK VL+LM+VK LT
Sbjct: 93  SSSMVGLKRSIR------APRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLT 152

Query: 62  ISHVKSHLQVF 73
           ++HVKSHLQ++
Sbjct: 153 LAHVKSHLQMY 157

[Close]
BLAST of MELO3C022542 vs. TrEMBL
Match: A0A0A0KSV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G276460 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60
          MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL
Sbjct: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60

Query: 61 TISHVKSHLQVF 73
          TISHVKSHLQ++
Sbjct: 61 TISHVKSHLQMY 72

[Close]
BLAST of MELO3C022542 vs. TrEMBL
Match: W9R1B9_9ROSA (Putative Myb family transcription factor OS=Morus notabilis GN=L484_022912 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-28
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 3  SNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTI 62
          +NSCGRNG+VRQYIRSKVPRLRWTP+LHH FV AIERLGGH+KATPKLVLQLMDVKGLTI
Sbjct: 2  TNSCGRNGAVRQYIRSKVPRLRWTPELHHCFVHAIERLGGHKKATPKLVLQLMDVKGLTI 61

Query: 63 SHVKSHLQVF 73
          SHVKSHLQ++
Sbjct: 62 SHVKSHLQMY 71

[Close]
BLAST of MELO3C022542 vs. TrEMBL
Match: A0A103XCP5_CYNCS (Homeodomain-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024191 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.1e-27
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 5  SCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISH 64
          SCGRNG+VRQYIRSKVPRLRWTPDLHHSFV AI+RLGG +KATPKLVLQ+MDV+GLTISH
Sbjct: 3  SCGRNGAVRQYIRSKVPRLRWTPDLHHSFVHAIDRLGGPEKATPKLVLQMMDVRGLTISH 62

Query: 65 VKSHLQVF 73
          VKSHLQ++
Sbjct: 63 VKSHLQMY 70

[Close]
BLAST of MELO3C022542 vs. TrEMBL
Match: A0A068UA23_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020426001 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.3e-27
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1 

Query: 5  SCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISH 64
          SCGRNG VRQYIRSKVPRLRWTPDLHH FV AIERLGG +KATPKLVLQ+MDV+GLTISH
Sbjct: 3  SCGRNGGVRQYIRSKVPRLRWTPDLHHCFVHAIERLGGQEKATPKLVLQMMDVRGLTISH 62

Query: 65 VKSHLQVF 73
          VKSHLQ++
Sbjct: 63 VKSHLQMY 70

[Close]
BLAST of MELO3C022542 vs. TrEMBL
Match: V4U401_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100054661mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 1 

Query: 5  SCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISH 64
          SCGR+G+VRQYIRSKVPRLRWTP+LH  FV AI+RLGGHQKATPKLVLQLMDVKGLTISH
Sbjct: 3  SCGRSGAVRQYIRSKVPRLRWTPELHRCFVHAIDRLGGHQKATPKLVLQLMDVKGLTISH 62

Query: 65 VKSHLQVF 73
          VKSHLQ++
Sbjct: 63 VKSHLQMY 70

[Close]
BLAST of MELO3C022542 vs. TAIR10
Match: AT1G14600.1 (AT1G14600.1 Homeodomain-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 4.2e-23
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 

Query: 6  CGRN-----GSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 65
          CGR+     G VR Y+RS VPRLRWTP+LH SFV A++ LGG  KATPKLVL++MDVKGL
Sbjct: 4  CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query: 66 TISHVKSHLQVF 73
          TISHVKSHLQ++
Sbjct: 64 TISHVKSHLQMY 75

[Close]
BLAST of MELO3C022542 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-22
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 1 

Query: 5  SCGRNGS----------VRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQL 64
          S GRNG+          VR Y+RS VPRLRWTPDLH  FV A+E LGG  +ATPKLVL++
Sbjct: 4  SSGRNGNGSFNGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKM 63

Query: 65 MDVKGLTISHVKSHLQVF 73
          MDVKGLTISHVKSHLQ++
Sbjct: 64 MDVKGLTISHVKSHLQMY 81

[Close]
BLAST of MELO3C022542 vs. TAIR10
Match: AT2G38300.1 (AT2G38300.1 myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-22
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1   MSSNSC----GRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMD 60
           +SSNS      +   VR Y+RSKVPRLRWTPDLH  FV A+ERLGG ++ATPKLV Q+M+
Sbjct: 31  VSSNSTVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMN 90

Query: 61  VKGLTISHVKSHLQVF 73
           +KGL+I+HVKSHLQ++
Sbjct: 91  IKGLSIAHVKSHLQMY 106

[Close]
BLAST of MELO3C022542 vs. TAIR10
Match: AT2G42660.1 (AT2G42660.1 Homeodomain-like superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 1 

Query: 11  SVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQ 70
           +VRQYIRS +PRLRWTPDLH SFV A++RLGG  +ATPKLVL++M++KGL+I+HVKSHLQ
Sbjct: 41  NVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ 100

Query: 71  VF 73
           ++
Sbjct: 101 MY 102

[Close]
BLAST of MELO3C022542 vs. TAIR10
Match: AT2G40260.1 (AT2G40260.1 Homeodomain-like superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-21
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 10  GSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHL 69
           GSVR Y RSK PRLRWTP+LH  F+ A+ERLGG  +ATPKLVLQLM+VKGL+I+HVKSHL
Sbjct: 72  GSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHL 131

Query: 70  QVF 73
           Q++
Sbjct: 132 QMY 134

[Close]
BLAST of MELO3C022542 vs. NCBI nr
Match: gi|778701853|ref|XP_011655099.1| (PREDICTED: putative Myb family transcription factor At1g14600 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60
          MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL
Sbjct: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60

Query: 61 TISHVKSHLQVF 73
          TISHVKSHLQ++
Sbjct: 61 TISHVKSHLQMY 72

[Close]
BLAST of MELO3C022542 vs. NCBI nr
Match: gi|659120467|ref|XP_008460208.1| (PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60
          MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL
Sbjct: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60

Query: 61 TISHVKSHLQVF 73
          TISHVKSHLQ++
Sbjct: 61 TISHVKSHLQMY 72

[Close]
BLAST of MELO3C022542 vs. NCBI nr
Match: gi|659120469|ref|XP_008460209.1| (PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60
          MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL
Sbjct: 1  MSSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGL 60

Query: 61 TISHVKSHLQVF 73
          TISHVKSHLQ++
Sbjct: 61 TISHVKSHLQMY 72

[Close]
BLAST of MELO3C022542 vs. NCBI nr
Match: gi|703087736|ref|XP_010093351.1| (Putative Myb family transcription factor [Morus notabilis])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 3  SNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTI 62
          +NSCGRNG+VRQYIRSKVPRLRWTP+LHH FV AIERLGGH+KATPKLVLQLMDVKGLTI
Sbjct: 2  TNSCGRNGAVRQYIRSKVPRLRWTPELHHCFVHAIERLGGHKKATPKLVLQLMDVKGLTI 61

Query: 63 SHVKSHLQVF 73
          SHVKSHLQ++
Sbjct: 62 SHVKSHLQMY 71

[Close]
BLAST of MELO3C022542 vs. NCBI nr
Match: gi|470123566|ref|XP_004297794.1| (PREDICTED: putative Myb family transcription factor At1g14600 [Fragaria vesca subsp. vesca])

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-28
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 2  SSNSCGRNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLT 61
          +S+SCGRNG+VR YIRSKVPRLRWTP+LHH FV AIERLGGH+KATPKLVLQ+MDVKGLT
Sbjct: 3  TSSSCGRNGAVRPYIRSKVPRLRWTPELHHCFVQAIERLGGHKKATPKLVLQIMDVKGLT 62

Query: 62 ISHVKSHLQVF 73
          ISHVKSHLQ+F
Sbjct: 63 ISHVKSHLQMF 73

The following BLAST results are available for this feature:
BLAST of MELO3C022542 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYBF_ARATH7.5e-2269.44Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At... [more]
KAN1_ARATH1.2e-1464.81Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1[more]
ROLL9_ORYSJ1.5e-1464.81Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV... [more]
KAN2_ARATH1.5e-1464.81Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1[more]
KAN4_ARATH7.6e-1453.52Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1[more]
BLAST of MELO3C022542 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSV1_CUCSA1.1e-3297.22Uncharacterized protein OS=Cucumis sativus GN=Csa_5G276460 PE=4 SV=1[more]
W9R1B9_9ROSA1.3e-2888.57Putative Myb family transcription factor OS=Morus notabilis GN=L484_022912 PE=4 ... [more]
A0A103XCP5_CYNCS7.1e-2786.76Homeodomain-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024191 PE=4... [more]
A0A068UA23_COFCA9.3e-2786.76Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020426001 PE=4 SV=1[more]
V4U401_9ROSI2.1e-2686.76Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100054661mg PE... [more]
BLAST of MELO3C022542 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14600.14.2e-2369.44 Homeodomain-like superfamily protein[more]
AT2G02060.12.1e-2265.38 Homeodomain-like superfamily protein[more]
AT2G38300.18.0e-2263.16 myb-like HTH transcriptional regulator family protein[more]
AT2G42660.11.8e-2170.97 Homeodomain-like superfamily protein[more]
AT2G40260.12.3e-2173.02 Homeodomain-like superfamily protein[more]
BLAST of MELO3C022542 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778701853|ref|XP_011655099.1|1.6e-3297.22PREDICTED: putative Myb family transcription factor At1g14600 [Cucumis sativus][more]
gi|659120467|ref|XP_008460208.1|1.6e-3297.22PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 [Cucumi... [more]
gi|659120469|ref|XP_008460209.1|1.6e-3297.22PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 [Cucumi... [more]
gi|703087736|ref|XP_010093351.1|1.9e-2888.57Putative Myb family transcription factor [Morus notabilis][more]
gi|470123566|ref|XP_004297794.1|7.0e-2885.92PREDICTED: putative Myb family transcription factor At1g14600 [Fragaria vesca su... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR006447Myb_dom_plants
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022542T1MELO3C022542T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 22..71
score: 2.
IPR006447Myb domain, plantsTIGRFAMsTIGR01557TIGR01557coord: 21..73
score: 4.3
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 17..72
score: 3.4
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 19..74
score: 3.23
NoneNo IPR availablePANTHERPTHR31314FAMILY NOT NAMEDcoord: 5..72
score: 7.1
NoneNo IPR availablePANTHERPTHR31314:SF13SUBFAMILY NOT NAMEDcoord: 5..72
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022542Csa5G276460Cucumber (Chinese Long) v2cumeB344
MELO3C022542Cla016935Watermelon (97103) v1mewmB078
MELO3C022542ClCG11G000650Watermelon (Charleston Gray)mewcgB044
MELO3C022542Cla97C11G206970Watermelon (97103) v2mewmbB048
MELO3C022542Cucsa.277160Cucumber (Gy14) v1cgymeB463
MELO3C022542Lsi11G000450Bottle gourd (USVL1VR-Ls)lsimeB083
MELO3C022542CsGy5G009220Cucumber (Gy14) v2cgybmeB312
MELO3C022542CsaV3_5G012310Cucumber (Chinese Long) v3cucmeB372
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022542Wild cucumber (PI 183967)cpimeB372