MELO3C022482 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022482
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	SWIb domain-containing protein
Location	chr11 : 30986686 .. 30988847 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAAAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAATCGAAAGCCGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGGTTAACTTTATTTCTCTTTTGTTCTAACCGATATGGCTATTTTTTAAGTATCGCTTTTCTACTTCCTTCTTTGCTGCAATCTCTTCGTTTGCTTTGTTATTTTAACTTAGCCTAGAACTTGAGGATTTGGGTGTTGTGTTCATTCGTAGTGTATCAAATGTTAGTTCTCTGTGAGCCGAATCTCTCTTTCAGACCTCAGTTGCTCAACTGAAGGTCTCTGGAATGGATGTTCTGAATTTGAAAACTAGGTTAAAGTATAGGTGGTGAACCCTACTATTCTTGAATCAAATAATCTATATACCTGTTCGCAAGTTTCGGTGAATGCATTCATTCAGCAGTGTCGTTTAAAGGATTTTGCTACTGTGTGACGTTTTCTTTTCACATGGATTCGGGTTTGAGCTCTGCTTTGAAAAAGTTAGCTGCTACATAGAGCTGGGAGGGAGAAATTAGAATTTAACGTAGTATTGATTTCTTTTTTGGGAATTTGGAAGATTTTGCTGATTGATACACATGTATATAACATTTTGATGTGCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAATACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCGCCATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGAACCTTTTTCAGAATTCGTAGTTTTTTCTAGTCCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGACAGAAGTTTTTCCTATTTCATATATACATAGATACATTTTGGAGAAGTAATGATCGTTGTGGACTTAAAAATTGATATTCGTTGAGGTAAATGCAATTTATTGGTAGGTTGAATGTGGTAATTGTAATTATTAATGTTAACTTAGCTCAATAATTTCATTTCTACAATCAGTTGAAAAGATGGTAAATGTAATTTAACGTTAACGTGTAAATGTAATTTATTACTTGAATACTTAAAATTTCAATTATGTGCAAGATCTTGAAGAAAATTATGTTTCTAAGTTGATATGCCAAGTAACGCCAGAAATTCAAACGTACACAACAACACTCGAAATAATAATAATTATCTAAGTGAACCAATCCTAAAAGCAAGTTTATACTTTCTAAATTTGTTTTCGAGATTATAATTGAAGAATTCATAATTTTTAGCATTAGCCTTAGATCATCATAAACAAAGGTATGCTAGAAAGAACACACTCTCTTAGATGTTATTATTATTATAATTACCATATATAGTTGAGTTAGCTTTCAAGCTTAGTAGCCAAAAACGTACATGGCAATTTAGCATGGATGAAAGGAATTTTAAAAAAAAATTAAATATTACTAATTTGAGAGTGACTATGAGGGTAACAAGATTTAATGGAGAAGATGATAAACCCATTGATCAAGAATAGCAGGGGAACCATACCAGGGTCTCAATTCATCATCAGATCCAACAGGGGAATGATAGACTCCATCGAAGCTAATGTTGATAGCTCCCTCCAAATGAGC

mRNA sequence

ACCAAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAAAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAATCGAAAGCCGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAATACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCGCCATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGAACCTTTTTCAGAATTCGTAGTTTTTTCTAGTCCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGACAGAAGTTTTTCCTATTTCATATATACATAGATACATTTTGGAGAAGTAATGATCGTTGTGGACTTAAAAATTGATATTCGTTGAGGTAAATGCAATTTATTGGTAGGTTGAATGTGGTAATTGTAATTATTAATGTTAACTTAGCTCAATAATTTCATTTCTACAATCAGTTGAAAAGATGGTAAATGTAATTTAACGTTAACGTGTAAATGTAATTTATTACTTGAATACTTAAAATTTCAATTATGTGCAAGATCTTGAAGAAAATTATGTTTCTAAGTTGATATGCCAAGTAACGCCAGAAATTCAAACGTACACAACAACACTCGAAATAATAATAATTATCTAAGTGAACCAATCCTAAAAGCAAGTTTATACTTTCTAAATTTGTTTTCGAGATTATAATTGAAGAATTCATAATTTTTAGCATTAGCCTTAGATCATCATAAACAAAGGTATGCTAGAAAGAACACACTCTCTTAGATGTTATTATTATTATAATTACCATATATAGTTGAGTTAGCTTTCAAGCTTAGTAGCCAAAAACGTACATGGCAATTTAGCATGGATGAAAGGAATTTTAAAAAAAAATTAAATATTACTAATTTGAGAGTGACTATGAGGGTAACAAGATTTAATGGAGAAGATGATAAACCCATTGATCAAGAATAGCAGGGGAACCATACCAGGGTCTCAATTCATCATCAGATCCAACAGGGGAATGATAGACTCCATCGAAGCTAATGTTGATAGCTCCCTCCAAATGAGC

Coding sequence (CDS)

ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAATCGAAAGCCGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAA

Protein sequence

MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG*

Homology

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BLAST of MELO3C022482 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 37  SKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIW 96
           S  K K  S + S +K K      +NS    ++ + +S  L  FLG  E+ R   +K IW
Sbjct: 92  STRKRKGKSESKSKRKKKKNDSPDSNSIS--VRKVLLSAPLQKFLGSEELPRTQVVKMIW 151

Query: 97  SYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPH 142
            YIK ++LQN  D+R+I CD K++ IFG  +K+ M  ++K L+ H
Sbjct: 152 QYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

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BLAST of MELO3C022482 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-11
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 50  GQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 109
           G++     + Q  ++  + K +K+SP LA FLG  ++SR   +K++W YIK ++LQ+  D
Sbjct: 100 GEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPND 159

Query: 110 KRQINCDAKLKAIFGGREKVGMLEISKFLS 140
           KR I CD KLK++F   + + M  ++K+L+
Sbjct: 160 KRTILCDDKLKSVF-EVDTLHMFTMNKYLT 188

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BLAST of MELO3C022482 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10
Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 10  RFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMK 69
           RF R  + LL   +  T A   T  ++   +        S  K     K++   S   + 
Sbjct: 63  RFERSLEDLLK--ENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPIS 122

Query: 70  SLKV--SPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGRE 129
           + KV  S +LA  LG+ E++R + ++++W+YIK +NLQN  +K++I CD KL+ I G  +
Sbjct: 123 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--K 182

Query: 130 KVGMLEISKFLSPHFVK 145
              M E+ K L+ H  +
Sbjct: 183 STNMFEMHKILASHMTE 195

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BLAST of MELO3C022482 vs. TrEMBL
Match: A0A0A0KCY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-60
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 1


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 147
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

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BLAST of MELO3C022482 vs. TrEMBL
Match: A0A0A0L3V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-30
Identity = 76/157 (48.41%), Postives = 100/157 (63.69%), Query Frame = 1


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKP----------PSAAVSG 60
           M+SG +NG R FR C+ LL   K +    ++ P   + SKL+P          PS+  +G
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  QKSKAAPK--RQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQT 120
             +   PK  ++ +   GI+K  +VSP L+ FLG SE SR+DA+ QIWSYIKL+NLQN  
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 DKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           +KR+I CD KLKAIF GREKVG LEI K L+ HFVK+
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of MELO3C022482 vs. TrEMBL
Match: M5XE20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012921mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-27
Identity = 74/148 (50.00%), Postives = 91/148 (61.49%), Query Frame = 1


Query: 6   SNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNS-- 65
           SN  R FRGC+ L+    P   + S+  A  S SK    +      K KA PK   +S  
Sbjct: 4   SNVFRVFRGCRALM---APARSSSSTAGAAVSASKAATAAEPKPKAKPKAKPKAAADSTK 63

Query: 66  ------SGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDA 125
                 S GIMK   +SP L  FLG SE SRA+A+KQIW++IKL+NLQN  +KR+I+CD 
Sbjct: 64  PKIPNRSLGIMKPTPISPALGSFLGASESSRAEAVKQIWAHIKLHNLQNPANKREIHCDD 123

Query: 126 KLKAIFGGREKVGMLEISKFLSPHFVKS 146
           KLKAIF G+EKVG LEI K LS HFVK+
Sbjct: 124 KLKAIFEGKEKVGFLEIGKLLSRHFVKT 148

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BLAST of MELO3C022482 vs. TrEMBL
Match: A0A087H6P0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G029600 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 6   SNGTRFFRGCKTLL-DSLKPTTQAY-----SSTPAVSSKSKLKPPSAAVSGQKSKAAPKR 65
           S   R FRGC++LL  + KP T +      +   A  SK+K KP   +VS       P +
Sbjct: 3   SVAARVFRGCRSLLAPASKPITSSSVVSGATKKSAAKSKTKAKPKQRSVS-------PAK 62

Query: 66  QTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKL 125
           +T+ S GI K   VSP LA FLG  E +R DA+K+IW+Y+K ++LQN  +KR+I CD KL
Sbjct: 63  RTSRSAGIFKMTPVSPVLAQFLGTGETNRTDAVKEIWTYVKSHDLQNPANKREIFCDEKL 122

Query: 126 KAIFGGREKVGMLEISKFLSPHFVKS 146
           K IF G++KVG+LEI+K L+PHFVK+
Sbjct: 123 KLIFDGKDKVGLLEITKLLAPHFVKT 141

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BLAST of MELO3C022482 vs. TrEMBL
Match: R0HPC4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10014811mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.4e-25
Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 1


Query: 12  FRGCKTLLDSLKPTTQA--YSST-------------PAVSSKSKLKPPSAAVSGQKSKAA 71
           FRGC++LL      T +  YSS              PA  +K+K KP   A S   +K  
Sbjct: 10  FRGCRSLLAPASKATSSVLYSSRGVSNAVTAGSTKKPAAKTKTKAKPKPKAKSDSLAKKT 69

Query: 72  PKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCD 131
           P+     S GI K   VSP LA FLG  E +R DAIK+IW+YIK ++LQN  DKR+I CD
Sbjct: 70  PR-----STGIFKVTPVSPVLAQFLGTGETTRTDAIKEIWTYIKSHDLQNPADKREIFCD 129

Query: 132 AKLKAIFGGREKVGMLEISKFLSPHFVKS 146
             LK IF G++KVG LE+SK LSPHFVK+
Sbjct: 130 ETLKLIFEGKDKVGFLEVSKLLSPHFVKT 153

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BLAST of MELO3C022482 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-28
Identity = 71/137 (51.82%), Postives = 87/137 (63.50%), Query Frame = 1


Query: 12  FRGCKTLLDSLKPTTQAYSSTPAVSSKSK--LKPPSAAVSGQKSKA-APKRQTNSSGGIM 71
           FRG ++LL    P ++A SS  +  S  K   KP + A    K+K+ +P ++T  S GI 
Sbjct: 9   FRGARSLL---APASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIF 68

Query: 72  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 131
           K   VSP LA FLG  E SR DAIK IW+YIK ++LQN  DKR+I CD  LK IF G++K
Sbjct: 69  KVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDK 128

Query: 132 VGMLEISKFLSPHFVKS 146
           VG LEISK LSPHFVK+
Sbjct: 129 VGFLEISKLLSPHFVKT 142

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BLAST of MELO3C022482 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-22
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 52  KSKAAPKRQTNSSG-GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDK 111
           K+ ++   +T   G GI+K + VS  LA F+G++E+SR  A+K+IW YIKLNNLQN  +K
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 112 RQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           R+I CD +LK IF G++ VG LEISK LS HF KS
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of MELO3C022482 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 53  SKAAPKRQTNSSG---GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 112
           SKAA       +G   GI K+  VS  LA F G+ E++R  A+K++W Y+KL+NLQN  +
Sbjct: 16  SKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPAN 75

Query: 113 KRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           K++I+CD KLK IF G++KVG+ EI K LSPHF KS
Sbjct: 76  KKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of MELO3C022482 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1


Query: 9   TRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIM 68
           T  FR   T L SL+     ++S PA    +KL+   A  S  +S            GIM
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPA----AKLRLVRAVTSATESSEPTATNKRVPRGIM 75

Query: 69  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 128
           K   VSP +   +   EI+R  A+K+IW+YIK ++LQ+  +KR+I CD KLK IF GR++
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 129 VGMLEISKFLSPHFV 144
           VG LEI+K + PHF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

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BLAST of MELO3C022482 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-17
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 1


Query: 22  LKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFL 81
           L P++   S     + +      SAA +        K  T    GIMK   VS  +   +
Sbjct: 25  LSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTK--TREPRGIMKPRPVSQAMQDVV 84

Query: 82  GQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPH 141
           G  EI R  A+K+IW+YIK ++LQ+  +KR I CD KLK IF G+E+VG LEI+K + PH
Sbjct: 85  GVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPH 144

Query: 142 FV 144
           F+
Sbjct: 145 FL 144

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BLAST of MELO3C022482 vs. NCBI nr
Match: gi|659120238|ref|XP_008460088.1| (PREDICTED: protein TRI1-like [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 147
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of MELO3C022482 vs. NCBI nr
Match: gi|449473955|ref|XP_004154030.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 2.1e-60
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 1


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 147
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of MELO3C022482 vs. NCBI nr
Match: gi|449432287|ref|XP_004133931.1| (PREDICTED: upstream activation factor subunit spp27-like [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-30
Identity = 76/157 (48.41%), Postives = 100/157 (63.69%), Query Frame = 1


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKP----------PSAAVSG 60
           M+SG +NG R FR C+ LL   K +    ++ P   + SKL+P          PS+  +G
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  QKSKAAPK--RQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQT 120
             +   PK  ++ +   GI+K  +VSP L+ FLG SE SR+DA+ QIWSYIKL+NLQN  
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 DKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           +KR+I CD KLKAIF GREKVG LEI K L+ HFVK+
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

[Close]

BLAST of MELO3C022482 vs. NCBI nr
Match: gi|659075536|ref|XP_008438197.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 4.2e-29
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 1


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLK---------PPSAAVSGQ 60
           M+SG +NG R FR C+TLL   K +    ++ P   + +K K         P S A +G 
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  KSKAAPK--RQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 120
            +   PK  + T+   GI+K  +VSP L+ FLG SE SR DA+ QIWSYIKL+NLQN  +
Sbjct: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120

Query: 121 KRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           KR+I CD KLKAIF GREKV  LEI K L+ HFVK+
Sbjct: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

[Close]

BLAST of MELO3C022482 vs. NCBI nr
Match: gi|698484782|ref|XP_009789183.1| (PREDICTED: upstream activation factor subunit spp27-like [Nicotiana sylvestris])

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 1


Query: 12  FRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSG---GIM 71
           FRGC+ LL++ K TT++    P  +S S  K  +AA + + S +A K+  + S    G++
Sbjct: 9   FRGCRFLLEAAKATTRS----PKAASSSASKNKAAATTSKSSTSAGKQGRSPSARPTGLL 68

Query: 72  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 131
           K   VSPTL  FLG SE SR DA+K+IW YIKL+NLQ+  +KR+INCD KLK IFGG++K
Sbjct: 69  KVTPVSPTLHSFLGVSETSRGDAVKKIWDYIKLHNLQDPMNKREINCDHKLKTIFGGKDK 128

Query: 132 VGMLEISKFLSPHFVK 145
           VG LEISK LS HFVK
Sbjct: 129 VGFLEISKLLSAHFVK 140

The following BLAST results are available for this feature:

BLAST of MELO3C022482 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRI1_YEAST	8.7e-11	37.14	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]
UAF30_SCHPO	8.7e-11	36.67	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
UAF30_YEAST	3.3e-10	30.66	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of MELO3C022482 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY9_CUCSA	1.4e-60	82.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078570 PE=4 SV=1	[more]
A0A0A0L3V0_CUCSA	3.4e-30	48.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126840 PE=4 SV=1	[more]
M5XE20_PRUPE	7.9e-27	50.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012921mg PE=4 SV=1	[more]
A0A087H6P0_ARAAL	1.8e-26	47.26	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G029600 PE=4 SV=1	[more]
R0HPC4_9BRAS	4.4e-25	47.65	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10014811mg PE=4 SV=1	[more]

BLAST of MELO3C022482 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03590.1	3.8e-28	51.82	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.8e-22	53.68	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	1.5e-21	51.04	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	2.4e-19	40.74	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	3.9e-17	39.34	SWIB/MDM2 domain superfamily protein	[more]

BLAST of MELO3C022482 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120238\|ref\|XP_008460088.1\|	1.5e-74	100.00	PREDICTED: protein TRI1-like [Cucumis melo]	[more]
gi\|449473955\|ref\|XP_004154030.1\|	2.1e-60	82.88	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis sativus]	[more]
gi\|449432287\|ref\|XP_004133931.1\|	4.9e-30	48.41	PREDICTED: upstream activation factor subunit spp27-like [Cucumis sativus]	[more]
gi\|659075536\|ref\|XP_008438197.1\|	4.2e-29	48.72	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]	[more]
gi\|698484782\|ref\|XP_009789183.1\|	1.6e-28	52.94	PREDICTED: upstream activation factor subunit spp27-like [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54479	melon EST collection version 4.0	transcribed_cluster
MU63508	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022482T1	MELO3C022482T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU63508	MU63508	transcribed_cluster
MU54479	MU54479	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 60..144 score: 1.2
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 70..142 score: 9.7
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 64..144 score: 8.28
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..146 score: 2.2
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 65..145 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022482	Csa6G078570	Cucumber (Chinese Long) v2	cumeB442
MELO3C022482	Csa3G126840	Cucumber (Chinese Long) v2	cumeB182
MELO3C022482	Cla006979	Watermelon (97103) v1	mewmB140
MELO3C022482	Cla021328	Watermelon (97103) v1	mewmB098
MELO3C022482	ClCG05G002470	Watermelon (Charleston Gray)	mewcgB122
MELO3C022482	ClCG06G000610	Watermelon (Charleston Gray)	mewcgB124
MELO3C022482	Cla97C06G109840	Watermelon (97103) v2	mewmbB127
MELO3C022482	Cla97C05G082970	Watermelon (97103) v2	mewmbB125
MELO3C022482	Bhi12G002266	Wax gourd	mewgoB095
MELO3C022482	Bhi01G000050	Wax gourd	mewgoB106
MELO3C022482	CSPI03G09760	Wild cucumber (PI 183967)	cpimeB177
MELO3C022482	CSPI06G06060	Wild cucumber (PI 183967)	cpimeB433
MELO3C022482	Cucsa.257440	Cucumber (Gy14) v1	cgymeB429
MELO3C022482	Cucsa.362570	Cucumber (Gy14) v1	cgymeB586
MELO3C022482	CmaCh06G011500	Cucurbita maxima (Rimu)	cmameB748
MELO3C022482	CmaCh14G019650	Cucurbita maxima (Rimu)	cmameB213
MELO3C022482	CmoCh08G009570	Cucurbita moschata (Rifu)	cmomeB802
MELO3C022482	CmoCh06G011790	Cucurbita moschata (Rifu)	cmomeB740
MELO3C022482	CmoCh14G020250	Cucurbita moschata (Rifu)	cmomeB199
MELO3C022482	Lsi05G019370	Bottle gourd (USVL1VR-Ls)	lsimeB343
MELO3C022482	Lsi09G018840	Bottle gourd (USVL1VR-Ls)	lsimeB017
MELO3C022482	Cp4.1LG08g01970	Cucurbita pepo (Zucchini)	cpemeB791
MELO3C022482	Cp4.1LG17g02950	Cucurbita pepo (Zucchini)	cpemeB286
MELO3C022482	Cp4.1LG03g17270	Cucurbita pepo (Zucchini)	cpemeB552
MELO3C022482	CsGy6G006050	Cucumber (Gy14) v2	cgybmeB379
MELO3C022482	CsGy3G009850	Cucumber (Gy14) v2	cgybmeB152
MELO3C022482	Carg14851	Silver-seed gourd	carmeB0621
MELO3C022482	Carg06367	Silver-seed gourd	carmeB0938
MELO3C022482	CsaV3_3G009900	Cucumber (Chinese Long) v3	cucmeB179
MELO3C022482	CsaV3_6G006380	Cucumber (Chinese Long) v3	cucmeB444

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C022482	MELO3C006211	Melon (DHL92) v3.5.1	memeB054

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022482	Cucurbita maxima (Rimu)	cmameB316
MELO3C022482	Cucurbita maxima (Rimu)	cmameB818
MELO3C022482	Cucurbita moschata (Rifu)	cmomeB309
MELO3C022482	Cucurbita pepo (Zucchini)	cpemeB115
MELO3C022482	Cucurbita pepo (Zucchini)	cpemeB290
MELO3C022482	Silver-seed gourd	carmeB0231
MELO3C022482	Silver-seed gourd	carmeB1043
MELO3C022482	Silver-seed gourd	carmeB1044