MELO3C022028 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022028
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor, putative
Location	chr9 : 1750700 .. 1751091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGTGACTCCCCAGACGCCGTCGTTTCATAGTTAAAACGTCGCCGTTTTCATAGTTCTCTCTCTCTCTC

mRNA sequence

ATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGTGACTCCCCAGACGCCGTCGTTTCATAGTTAAAACGTCGCCGTTTTCATAGTTCTCTCTCTCTCTC

Coding sequence (CDS)

ATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGTGACTCCCCAGACGCCGTCGTTTCATAG

Protein sequence

MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS*

Homology

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BLAST of MELO3C022028 vs. TrEMBL
Match: A0A103YHA6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 9   PNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAA 68
           P  L+N+  R++ R  + S+ R  R H+       S    S VS KLEAL++LIP Q   
Sbjct: 5   PRRLKNFAPRKSLRGSSGSQHRRCRSHHKNSTITTS----SSVSDKLEALKNLIPAQEVD 64

Query: 69  GHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDS 112
           G   P  AD+LF++TADYI++L+TQV +LQKLVDF+GS+ S S
Sbjct: 65  G-AAPSSADQLFQETADYILLLRTQVSVLQKLVDFYGSSSSSS 102

[Close]

BLAST of MELO3C022028 vs. TrEMBL
Match: B9IK68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12850g PE=4 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1


Query: 19  RTKRSLTHSRRRFHRRHNAG-CRP------GDSTLGCSEVSTKLEALQSLIPPQSAAGHG 78
           ++K SL  + RR  RR +AG C+       G  T  CS+VS KLEAL++LIP  +   +G
Sbjct: 7   KSKISLKKTARRRRRRPHAGACKARRGICNGGLTSSCSKVSDKLEALKNLIP--ATCHNG 66

Query: 79  QPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
           +  + D+LFK+TADYI++L+TQVV+LQ LV+F+GS+
Sbjct: 67  EIVKPDQLFKETADYILLLRTQVVLLQGLVEFYGSS 100

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BLAST of MELO3C022028 vs. TrEMBL
Match: B9SJE1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-11
Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 19  RTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQADE 78
           R +R L H RRR  ++         ST   S+VS KLEAL++LIP    A +G+  +AD+
Sbjct: 28  RRRRRLIHVRRRLCKKAQRS-----STCSSSKVSHKLEALKNLIP----ANNGEIVKADQ 87

Query: 79  LFKDTADYIVVLKTQVVILQKLVDFFGSAC--SDSPDAVV 117
           LF++TADYIV+L+TQV +LQ+L+ F+GS+   +D+ +AV+
Sbjct: 88  LFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAVI 118

[Close]

BLAST of MELO3C022028 vs. TrEMBL
Match: W9QIE0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.4e-11
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 1


Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAG------CRPGDSTLGCSEVSTK 60
           M S T       R  RRRR   SL   RRR   R          C  G  T  CS+VS K
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSL---RRRPRSRDCCAAVSRRRCDNGGRT--CSKVSDK 60

Query: 61  LEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDS 112
           LEAL++LIP Q     G+  +AD+LF+ TADYIV+L+ +VVILQKL++F+GS+ S++
Sbjct: 61  LEALKNLIPAQE----GEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESEN 108

[Close]

BLAST of MELO3C022028 vs. TrEMBL
Match: F6H405_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-11
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 11  PLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGH 70
           P+   RRRR++R       R  R   +    GDS+   S+VS KLEAL+SL+P      H
Sbjct: 5   PIAKMRRRRSRRPNARLCCRVRRGSRSFGNGGDSS---SKVSDKLEALRSLVPV-----H 64

Query: 71  GQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGS 107
               QAD+LF++TADYIV+L+ QVVILQ+L+ F+GS
Sbjct: 65  NGDIQADQLFQETADYIVLLRKQVVILQRLIQFYGS 92

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BLAST of MELO3C022028 vs. TAIR10
Match: AT3G29370.1 (AT3G29370.1 unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-10
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 18  RRTKRSLTHSRRRFH----RRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQP 77
           R  K   T  RRR +     R    C    S+ G   V  KL AL+SL+PP    G G  
Sbjct: 2   RTLKTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGGG-- 61

Query: 78  RQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVV 117
            + +ELF++TA+YIV L+TQVV+L+KL++ + ++     D V+
Sbjct: 62  -ETEELFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVVL 101

[Close]

BLAST of MELO3C022028 vs. TAIR10
Match: AT5G39240.1 (AT5G39240.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-08
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 45  TLGCSEVSTKLEALQSLIPPQSAAGHGQPR-----------QADELFKDTADYIVVLKTQ 104
           T G  + S KL+AL+SL+PP S       +           + ++LF++TADYIV L+ Q
Sbjct: 24  TSGGEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVGETEQLFQETADYIVRLRGQ 83

Query: 105 VVILQKLVDFFGSA 108
           VV+LQKL++ +GS+
Sbjct: 84  VVVLQKLIEIYGSS 97

[Close]

BLAST of MELO3C022028 vs. NCBI nr
Match: gi|747101312|ref|XP_011098783.1| (PREDICTED: transcription factor UPBEAT1-like [Sesamum indicum])

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 1


Query: 25  THSRRRFHRRHNAGCRPGDSTLG---CSEVSTKLEALQSLIPPQSAAGHGQPRQADELFK 84
           T  RR   R  N+  RP ++ +G    S VS KLEAL+SLIP Q A       +A++LFK
Sbjct: 11  TALRRLRRRSSNSKRRPAEACIGGGAASSVSEKLEALRSLIPSQDAE-----IKAEQLFK 70

Query: 85  DTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 118
           +TADYIV+LKTQV++LQKLVDF+G+    +PDAV+S
Sbjct: 71  ETADYIVLLKTQVLVLQKLVDFYGAQPQHNPDAVIS 101

[Close]

BLAST of MELO3C022028 vs. NCBI nr
Match: gi|976925159|gb|KVI09071.1| (hypothetical protein Ccrd_012550 [Cynara cardunculus var. scolymus])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 9   PNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAA 68
           P  L+N+  R++ R  + S+ R  R H+       S    S VS KLEAL++LIP Q   
Sbjct: 5   PRRLKNFAPRKSLRGSSGSQHRRCRSHHKNSTITTS----SSVSDKLEALKNLIPAQEVD 64

Query: 69  GHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDS 112
           G   P  AD+LF++TADYI++L+TQV +LQKLVDF+GS+ S S
Sbjct: 65  G-AAPSSADQLFQETADYILLLRTQVSVLQKLVDFYGSSSSSS 102

[Close]

BLAST of MELO3C022028 vs. NCBI nr
Match: gi|747077465|ref|XP_011085853.1| (PREDICTED: uncharacterized protein LOC105167731 [Sesamum indicum])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 18  RRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQAD 77
           RR +R  ++S RR  + H +  R G    G   VS KLEAL+SLIP + A       + D
Sbjct: 15  RRLRRKSSYSSRRLSKLHESRHRVG----GGPSVSDKLEALKSLIPSEKAE-----LKPD 74

Query: 78  ELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAV 116
           +LF++TADYIV+LKTQV +LQKL+DF+GS   ++P+AV
Sbjct: 75  QLFQETADYIVLLKTQVFVLQKLIDFYGSQPQENPNAV 103

[Close]

BLAST of MELO3C022028 vs. NCBI nr
Match: gi|694379551|ref|XP_009365960.1| (PREDICTED: uncharacterized protein LOC103955783 [Pyrus x bretschneideri])

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-12
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 2   SSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRP---GDSTLGCSE-VSTKLEA 61
           S+  N L   L   RRRR     T  RR   RR  A  R    GD    CS+ VS KLE 
Sbjct: 3   SAPANYLKAALAGRRRRRN----TSRRRLMSRRCRAPVRSFNSGDRKRRCSKAVSAKLEM 62

Query: 62  LQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAV 116
           L+SL+ P      G+  +ADELF++TADYIV+L+TQVVILQ+LV+F+GS+  ++  AV
Sbjct: 63  LKSLVNPTHV---GKSLKADELFQETADYIVLLRTQVVILQRLVEFYGSSEKENVAAV 113

[Close]

BLAST of MELO3C022028 vs. NCBI nr
Match: gi|566213009|ref|XP_002324106.2| (hypothetical protein POPTR_0017s12850g [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1


Query: 19  RTKRSLTHSRRRFHRRHNAG-CRP------GDSTLGCSEVSTKLEALQSLIPPQSAAGHG 78
           ++K SL  + RR  RR +AG C+       G  T  CS+VS KLEAL++LIP  +   +G
Sbjct: 7   KSKISLKKTARRRRRRPHAGACKARRGICNGGLTSSCSKVSDKLEALKNLIP--ATCHNG 66

Query: 79  QPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
           +  + D+LFK+TADYI++L+TQVV+LQ LV+F+GS+
Sbjct: 67  EIVKPDQLFKETADYILLLRTQVVLLQGLVEFYGSS 100

The following BLAST results are available for this feature:

BLAST of MELO3C022028 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103YHA6_CYNCS	4.0e-13	46.60	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 ...	[more]
B9IK68_POPTR	1.3e-11	47.92	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12850g PE=4 SV=2	[more]
B9SJE1_RICCO	2.2e-11	45.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1	[more]
W9QIE0_9ROSA	6.4e-11	45.30	Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1	[more]
F6H405_VITVI	8.4e-11	46.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=...	[more]

BLAST of MELO3C022028 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29370.1	4.8e-10	37.86	unknown protein	[more]
AT5G39240.1	4.5e-08	40.54	unknown protein	[more]

BLAST of MELO3C022028 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|747101312\|ref\|XP_011098783.1\|	4.0e-14	52.08	PREDICTED: transcription factor UPBEAT1-like [Sesamum indicum]	[more]
gi\|976925159\|gb\|KVI09071.1\|	5.7e-13	46.60	hypothetical protein Ccrd_012550 [Cynara cardunculus var. scolymus]	[more]
gi\|747077465\|ref\|XP_011085853.1\|	5.7e-13	47.96	PREDICTED: uncharacterized protein LOC105167731 [Sesamum indicum]	[more]
gi\|694379551\|ref\|XP_009365960.1\|	8.3e-12	46.61	PREDICTED: uncharacterized protein LOC103955783 [Pyrus x bretschneideri]	[more]
gi\|566213009\|ref\|XP_002324106.2\|	1.8e-11	47.92	hypothetical protein POPTR_0017s12850g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022028T1	MELO3C022028T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 17..106 score: 8.7
None	No IPR available	PANTHER	PTHR33124:SF9	SUBFAMILY NOT NAMED	coord: 17..106 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022028	ClCG11G004700	Watermelon (Charleston Gray)	mewcgB009
MELO3C022028	Bhi06G000283	Wax gourd	mewgoB022
MELO3C022028	Cucsa.157910	Cucumber (Gy14) v1	cgymeB265
MELO3C022028	CmoCh15G002510	Cucurbita moschata (Rifu)	cmomeB239
MELO3C022028	Lsi03G001640	Bottle gourd (USVL1VR-Ls)	lsimeB233
MELO3C022028	CsGy5G028760	Cucumber (Gy14) v2	cgybmeB299
MELO3C022028	Carg02224	Silver-seed gourd	carmeB0260

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022028	Bottle gourd (USVL1VR-Ls)	lsimeB165
MELO3C022028	Silver-seed gourd	carmeB0018
MELO3C022028	Cucumber (Chinese Long) v3	cucmeB001
MELO3C022028	Cucumber (Chinese Long) v3	cucmeB358
MELO3C022028	Watermelon (97103) v2	mewmbB016
MELO3C022028	Watermelon (97103) v2	mewmbB022
MELO3C022028	Wax gourd	mewgoB045
MELO3C022028	Wax gourd	mewgoB046
MELO3C022028	Melon (DHL92) v3.5.1	memeB005
MELO3C022028	Melon (DHL92) v3.5.1	memeB011
MELO3C022028	Cucumber (Gy14) v1	cgymeB152
MELO3C022028	Cucurbita maxima (Rimu)	cmameB251
MELO3C022028	Cucurbita maxima (Rimu)	cmameB384
MELO3C022028	Cucurbita maxima (Rimu)	cmameB634
MELO3C022028	Cucurbita moschata (Rifu)	cmomeB624
MELO3C022028	Wild cucumber (PI 183967)	cpimeB001
MELO3C022028	Wild cucumber (PI 183967)	cpimeB349
MELO3C022028	Cucumber (Chinese Long) v2	cumeB006
MELO3C022028	Cucumber (Chinese Long) v2	cumeB358
MELO3C022028	Cucumber (Chinese Long) v2	cumeB366
MELO3C022028	Watermelon (Charleston Gray)	mewcgB025
MELO3C022028	Watermelon (97103) v1	mewmB036
MELO3C022028	Watermelon (97103) v1	mewmB038
MELO3C022028	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C022028	Cucurbita pepo (Zucchini)	cpemeB358