MELO3C021967 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021967
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified, expressed
Location	chr9 : 2463878 .. 2464204 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTGTGCTGCCTGTTCAAAAATGGCGACCATATCTATTGGATAAGCCTTTTGTGGTGTGTACAAATCAGAAAAGTTTGAAGTTTCTTCTTGACCAACGAGCTATCGGGGGAGAATATCAGAGATGGATCGCTAAACTATTGGAGTATGATTTTGTGATTGAATACAAGAAGGGATTGGAAAACAAAGCGGCTGATGCCTTATCTAGATTACCACCAGTATTTGAATTGGGCCTCATAAGTGTTGTGGGTGGGCTAAATCCTTCGGTTTTCATTGACAAGTACCTGGAAATGAATCTCTTAAGAGTATTCGGTTATCCTTGA

mRNA sequence

ATGGCAATTGTGCTGCCTGTTCAAAAATGGCGACCATATCTATTGGATAAGCCTTTTGTGGTGTGTACAAATCAGAAAAGTTTGAAGTTTCTTCTTGACCAACGAGCTATCGGGGGAGAATATCAGAGATGGATCGCTAAACTATTGGAGTATGATTTTGTGATTGAATACAAGAAGGGATTGGAAAACAAAGCGGCTGATGCCTTATCTAGATTACCACCAGTATTTGAATTGGGCCTCATAAGTGTTGTGGGTGGGCTAAATCCTTCGGTTTTCATTGACAAGTACCTGGAAATGAATCTCTTAAGAGTATTCGGTTATCCTTGA

Coding sequence (CDS)

ATGGCAATTGTGCTGCCTGTTCAAAAATGGCGACCATATCTATTGGATAAGCCTTTTGTGGTGTGTACAAATCAGAAAAGTTTGAAGTTTCTTCTTGACCAACGAGCTATCGGGGGAGAATATCAGAGATGGATCGCTAAACTATTGGAGTATGATTTTGTGATTGAATACAAGAAGGGATTGGAAAACAAAGCGGCTGATGCCTTATCTAGATTACCACCAGTATTTGAATTGGGCCTCATAAGTGTTGTGGGTGGGCTAAATCCTTCGGTTTTCATTGACAAGTACCTGGAAATGAATCTCTTAAGAGTATTCGGTTATCCTTGA

Protein sequence

MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKGLENKAADALSRLPPVFELGLISVVGGLNPSVFIDKYLEMNLLRVFGYP*

Homology

[Close]

BLAST of MELO3C021967 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-09
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           +AIV   + +R YLL + F++ ++ + L++L + +  G + +RW  +L EY F I+Y KG
Sbjct: 552 LAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKG 611

Query: 61  LENKAADALSRL 73
            EN  ADALSR+
Sbjct: 612 KENSVADALSRI 623

[Close]

BLAST of MELO3C021967 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-07
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           +AIV   + +R YLL + F + ++ + L +L   +    +  RW  KL E+DF I+Y KG
Sbjct: 553 LAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKG 612

Query: 61  LENKAADALSRL 73
            EN  ADALSR+
Sbjct: 613 KENCVADALSRI 624

[Close]

BLAST of MELO3C021967 vs. TrEMBL
Match: A0A087H8D5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G106900 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1    MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
            MAIV  +QKWR YLL + FVV T+QKSLKFLL+QR I  EYQ+W+ K+L +DF I+YK G
Sbjct: 906  MAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQRQINMEYQKWLTKILGFDFNIQYKSG 965

Query: 61   LENKAADALSR---LPPVFELGLISVVGGLNPSVFIDKYLEMNLLR 104
            LENKAADALSR   +P +F L + + +   + S  +DK L++  ++
Sbjct: 966  LENKAADALSRRDAIPQLFALSIPAAIQLEDISSEVDKDLKLQKIK 1011

[Close]

BLAST of MELO3C021967 vs. TrEMBL
Match: A0A087H2U0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           MAIVL +Q+WR YLL + F+V T+QKSLKFLL+QR +  EYQ+W+ K+L +DF I YK G
Sbjct: 801 MAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPG 860

Query: 61  LENKAADALSRLPPVFELGLISVVGGLNPSVF---IDKYLEMNLLR 104
           LENKAADALSR   V +L  +S+ G +   +    +DK +E++ ++
Sbjct: 861 LENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDKDMELSKIK 906

[Close]

BLAST of MELO3C021967 vs. TrEMBL
Match: A0A087H2T8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           MAIVL +Q+WR YLL + F+V T+QKSLKFLL+QR +  EYQ+W+ K+L +DF I YK G
Sbjct: 426 MAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPG 485

Query: 61  LENKAADALSRLPPVFELGLISVVGGLNPSVF---IDKYLEMNLLR 104
           LENKAADALSR   V +L  +S+ G +   +    +DK +E++ ++
Sbjct: 486 LENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDKDMELSKIK 531

[Close]

BLAST of MELO3C021967 vs. TrEMBL
Match: A0A087H2T9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           MAIVL +Q+WR YLL + F+V T+QKSLKFLL+QR +  EYQ+W+ K+L +DF I YK G
Sbjct: 168 MAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPG 227

Query: 61  LENKAADALSRLPPVFELGLISVVGGLNPSVF---IDKYLEMNLLR 104
           LENKAADALSR   V +L  +S+ G +   +    +DK +E++ ++
Sbjct: 228 LENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDKDMELSKIK 273

[Close]

BLAST of MELO3C021967 vs. TrEMBL
Match: A0A087G3S6_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.0e-20
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 1    MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
            MAIV  +QKWR YLL + FVV T+QKSLKFLL+QR I  EYQ+W+ KLL +DF I+YK G
Sbjct: 981  MAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINMEYQKWLTKLLGFDFEIQYKPG 1040

Query: 61   LENKAADALSRLPPVFELGLISV 84
            LENKAADALSR     +L  +S+
Sbjct: 1041 LENKAADALSRKDMALQLCALSI 1063

[Close]

BLAST of MELO3C021967 vs. NCBI nr
Match: gi|923614274|ref|XP_013745228.1| (PREDICTED: uncharacterized protein LOC106447810 [Brassica napus])

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-21
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1    MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
            MAIV  +QKWR YLL + FVV T+QKSLKFLL+QR I  EYQRW+ K+L +DF I YK G
Sbjct: 983  MAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINMEYQRWLTKILGFDFDIHYKPG 1042

Query: 61   LENKAADALSRLPPVFELGLISV 84
            LENKAADALSR  PV EL  +SV
Sbjct: 1043 LENKAADALSRKSPVTELFAVSV 1065

[Close]

BLAST of MELO3C021967 vs. NCBI nr
Match: gi|674245622|gb|KFK38387.1| (hypothetical protein AALP_AA3G106900 [Arabis alpina])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1    MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
            MAIV  +QKWR YLL + FVV T+QKSLKFLL+QR I  EYQ+W+ K+L +DF I+YK G
Sbjct: 906  MAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQRQINMEYQKWLTKILGFDFNIQYKSG 965

Query: 61   LENKAADALSR---LPPVFELGLISVVGGLNPSVFIDKYLEMNLLR 104
            LENKAADALSR   +P +F L + + +   + S  +DK L++  ++
Sbjct: 966  LENKAADALSRRDAIPQLFALSIPAAIQLEDISSEVDKDLKLQKIK 1011

[Close]

BLAST of MELO3C021967 vs. NCBI nr
Match: gi|674243675|gb|KFK36440.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           MAIVL +Q+WR YLL + F+V T+QKSLKFLL+QR +  EYQ+W+ K+L +DF I YK G
Sbjct: 426 MAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPG 485

Query: 61  LENKAADALSRLPPVFELGLISVVGGLNPSVF---IDKYLEMNLLR 104
           LENKAADALSR   V +L  +S+ G +   +    +DK +E++ ++
Sbjct: 486 LENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDKDMELSKIK 531

[Close]

BLAST of MELO3C021967 vs. NCBI nr
Match: gi|674243676|gb|KFK36441.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           MAIVL +Q+WR YLL + F+V T+QKSLKFLL+QR +  EYQ+W+ K+L +DF I YK G
Sbjct: 168 MAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPG 227

Query: 61  LENKAADALSRLPPVFELGLISVVGGLNPSVF---IDKYLEMNLLR 104
           LENKAADALSR   V +L  +S+ G +   +    +DK +E++ ++
Sbjct: 228 LENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDKDMELSKIK 273

[Close]

BLAST of MELO3C021967 vs. NCBI nr
Match: gi|674243677|gb|KFK36442.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 1   MAIVLPVQKWRPYLLDKPFVVCTNQKSLKFLLDQRAIGGEYQRWIAKLLEYDFVIEYKKG 60
           MAIVL +Q+WR YLL + F+V T+QKSLKFLL+QR +  EYQ+W+ K+L +DF I YK G
Sbjct: 801 MAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPG 860

Query: 61  LENKAADALSRLPPVFELGLISVVGGLNPSVF---IDKYLEMNLLR 104
           LENKAADALSR   V +L  +S+ G +   +    +DK +E++ ++
Sbjct: 861 LENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDKDMELSKIK 906

The following BLAST results are available for this feature:

BLAST of MELO3C021967 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	7.9e-09	40.28	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL3_DROME	5.7e-07	40.28	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of MELO3C021967 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087H8D5_ARAAL	1.1e-20	52.83	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G106900 PE=4 SV=1	[more]
A0A087H2U0_ARAAL	1.8e-20	50.94	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087H2T8_ARAAL	1.8e-20	50.94	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087H2T9_ARAAL	1.8e-20	50.94	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087G3S6_ARAAL	7.0e-20	62.65	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4...	[more]

BLAST of MELO3C021967 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923614274\|ref\|XP_013745228.1\|	2.4e-21	67.47	PREDICTED: uncharacterized protein LOC106447810 [Brassica napus]	[more]
gi\|674245622\|gb\|KFK38387.1\|	1.5e-20	52.83	hypothetical protein AALP_AA3G106900 [Arabis alpina]	[more]
gi\|674243675\|gb\|KFK36440.1\|	2.6e-20	50.94	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]
gi\|674243676\|gb\|KFK36441.1\|	2.6e-20	50.94	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]
gi\|674243677\|gb\|KFK36442.1\|	2.6e-20	50.94	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU62821	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021967T1	MELO3C021967T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU62821	MU62821	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..74 score: 2.5
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..74 score: 2.5
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 1..58 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021967	Silver-seed gourd	carmeB0260
MELO3C021967	Silver-seed gourd	carmeB0682
MELO3C021967	Wax gourd	mewgoB022
MELO3C021967	Cucumber (Chinese Long) v3	cucmeB000
MELO3C021967	Cucumber (Chinese Long) v3	cucmeB167
MELO3C021967	Cucumber (Chinese Long) v3	cucmeB358
MELO3C021967	Watermelon (97103) v2	mewmbB011
MELO3C021967	Watermelon (97103) v2	mewmbB014
MELO3C021967	Watermelon (97103) v2	mewmbB026
MELO3C021967	Watermelon (97103) v2	mewmbB038
MELO3C021967	Wax gourd	mewgoB046
MELO3C021967	Melon (DHL92) v3.5.1	memeB005
MELO3C021967	Melon (DHL92) v3.5.1	memeB012
MELO3C021967	Melon (DHL92) v3.5.1	memeB014
MELO3C021967	Cucumber (Gy14) v1	cgymeB114
MELO3C021967	Cucumber (Gy14) v1	cgymeB265
MELO3C021967	Cucumber (Gy14) v1	cgymeB472
MELO3C021967	Cucumber (Gy14) v1	cgymeB550
MELO3C021967	Cucurbita maxima (Rimu)	cmameB251
MELO3C021967	Cucurbita maxima (Rimu)	cmameB634
MELO3C021967	Cucurbita moschata (Rifu)	cmomeB239
MELO3C021967	Cucurbita moschata (Rifu)	cmomeB624
MELO3C021967	Cucurbita moschata (Rifu)	cmomeB630
MELO3C021967	Wild cucumber (PI 183967)	cpimeB000
MELO3C021967	Wild cucumber (PI 183967)	cpimeB165
MELO3C021967	Wild cucumber (PI 183967)	cpimeB349
MELO3C021967	Wild cucumber (PI 183967)	cpimeB354
MELO3C021967	Cucumber (Chinese Long) v2	cumeB005
MELO3C021967	Cucumber (Chinese Long) v2	cumeB174
MELO3C021967	Cucumber (Chinese Long) v2	cumeB358
MELO3C021967	Watermelon (Charleston Gray)	mewcgB002
MELO3C021967	Watermelon (Charleston Gray)	mewcgB007
MELO3C021967	Watermelon (Charleston Gray)	mewcgB029
MELO3C021967	Watermelon (97103) v1	mewmB003
MELO3C021967	Watermelon (97103) v1	mewmB008
MELO3C021967	Watermelon (97103) v1	mewmB021
MELO3C021967	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C021967	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C021967	Cucurbita pepo (Zucchini)	cpemeB467
MELO3C021967	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C021967	Bottle gourd (USVL1VR-Ls)	lsimeB163
MELO3C021967	Cucumber (Gy14) v2	cgybmeB001
MELO3C021967	Cucumber (Gy14) v2	cgybmeB299