MELO3C021868 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021868
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMajor capsid protein L1
Locationchr11 : 6065829 .. 6066278 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

mRNA sequence

ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

Coding sequence (CDS)

ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

Protein sequence

MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMMIPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGEHNEYLYYEVPAAVLEQSDEQQQQKNQEEI*
Homology
[Close]
BLAST of MELO3C021868 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 1 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFG TYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKN 146
           HNEYLYY+VPAAV EQSDEQQQQ+N
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQEN 221

[Close]
BLAST of MELO3C021868 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 3.0e-67
Identity = 131/164 (79.88%), Postives = 140/164 (85.37%), Query Frame = 1 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFG TYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYYEVP---------------AAVLEQSDEQQQQKNQEEI 150
           HNEYLYY+VP               AAV EQSDEQQQQ+N EEI
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 240


HSP 2 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1 

Query: 28  DQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMMIPTFGTTYYDSGVGQSSDFGRVYYNSE 87
           DQLEEVDQ+VEEV PVT T  QS+H YVS VMM+PTFGTTYYD GVGQSSDF   YYNSE
Sbjct: 169 DQLEEVDQNVEEVAPVTQT--QSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSE 228

Query: 88  AGRSSTDFGQQ 99
           AG SS++FGQQ
Sbjct: 229 AGSSSSNFGQQ 237

[Close]
BLAST of MELO3C021868 vs. NCBI nr
Match: gi|659123450|ref|XP_008461670.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVP 42
           MENIHYMYNV IVPALVQRRRPLVQE +QLEEV QHVEEVP
Sbjct: 189 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 229

[Close]
BLAST of MELO3C021868 vs. NCBI nr
Match: gi|659123452|ref|XP_008461671.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVP 42
           MENIHYMYNV IVPALVQRRRPLVQE +QLEEV QHVEEVP
Sbjct: 182 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 222

The following BLAST results are available for this feature:
BLAST of MELO3C021868 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|1.2e-6888.28PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|659069376|ref|XP_008449513.1|3.0e-6779.88PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|659123450|ref|XP_008461670.1|8.9e-1190.24PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo][more]
gi|659123452|ref|XP_008461671.1|8.9e-1190.24PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021868T1MELO3C021868T1mRNA