MELO3C021834 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021834
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionACT11D09.5
Locationchr11 : 6734977 .. 6735693 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGGACACCTTTTTCTGAGAGGATAGATGGGTGGGGGAGTGCTCCCTTTCTTTTGTTTATTCGCATTTGTATAATCTTTCCTCGTCCAAAAACTATACTATCTCAGAGCTGCTGTTGGTGAGGTCTAAGAATTTTGAGTCTTTCTCGTTTGGATTTCATCATAACTTGACCAATAGGGAAATGACAGATGTGACCTCTCTTCTTTCCTTACTCAAGGGGGGTTCACTGTTAGAGTGGGGAGGAGAGATGCACATGTTTGGATTCCTAATCCTAGTAGGGGATTTTCTTGTGATTCTTTGTTTTGGTTGTTGGATCCCACTCCCCCTTCGATCTTTGATGTGGTTATGAGGACTAAGGTTCTGAAGAAAGTTAGGTTTTTGTATTTGGCCGGTCTTGCTTGGCCGGGTTAACACTGTCGATAAGTTTGTTAGGAGGACTTCGCTTGTTAGGCCTTCTTGTTGTTTGCTCTGTCGAATGGTGGAAGACGATCTTGATCACCTTTTCTGGGATTGCCATTTTGCGAGGGTGGTGCTCTTTTCTTCATGAGTTCAGGTTTAGCTTTGCCTGCTCGAGGAGTGTTAGAGTGACGATTAAGGAGTTCCTTCTCCATCCACATTTTAGTGATGAGGGTGGCTTTTTATGGCGTTCTGCAGTGTATGCCATTATTTGTGATATTCTGGGCGAGAGGAATGATAAGGTGTTTATGGGGTAA

mRNA sequence

ATGGGAAATGACAGATGTGACCTCTCTTCTTTCCTTACTCAAGGGGGGTTCACTGTTAGAGTGGGGAGGAGAGATGCACATGTTTGGATTCCTAATCCTAGTAGGGGATTTTCTTGTGATTCTTTGTTTTGGTTGTTGGATCCCACTCCCCCTTCGATCTTTGATGTGGTTATGAGGACTAAGGTTCTGAAGAAAGTTAGGTTTTTGTATTTGGCCGGTCTTGCTTGGCCGGGCCTTCTTGTTGTTTGCTCTGTCGAATGGTGGAAGACGATCTTGATCACCTTTTCTGGGATTGCCATTTTGCGAGGGTGGTGCTCTTTTCTTCATGAGTTCAGGTTTAGCTTTGCCTGCTCGAGGAGTGTTAGAGTGACGATTAAGGAGTTCCTTCTCCATCCACATTTTAGTGATGAGGGTGGCTTTTTATGGCGTTCTGCAGTGTATGCCATTATTTGTGATATTCTGGGCGAGAGGAATGATAAGGTGTTTATGGGGTAA

Coding sequence (CDS)

ATGGGAAATGACAGATGTGACCTCTCTTCTTTCCTTACTCAAGGGGGGTTCACTGTTAGAGTGGGGAGGAGAGATGCACATGTTTGGATTCCTAATCCTAGTAGGGGATTTTCTTGTGATTCTTTGTTTTGGTTGTTGGATCCCACTCCCCCTTCGATCTTTGATGTGGTTATGAGGACTAAGGTTCTGAAGAAAGTTAGGTTTTTGTATTTGGCCGGTCTTGCTTGGCCGGGCCTTCTTGTTGTTTGCTCTGTCGAATGGTGGAAGACGATCTTGATCACCTTTTCTGGGATTGCCATTTTGCGAGGGTGGTGCTCTTTTCTTCATGAGTTCAGGTTTAGCTTTGCCTGCTCGAGGAGTGTTAGAGTGACGATTAAGGAGTTCCTTCTCCATCCACATTTTAGTGATGAGGGTGGCTTTTTATGGCGTTCTGCAGTGTATGCCATTATTTGTGATATTCTGGGCGAGAGGAATGATAAGGTGTTTATGGGGTAA

Protein sequence

MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRTKVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRSVRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG*
Homology
[Close]
BLAST of MELO3C021834 vs. TrEMBL
Match: Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 4.2e-93
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

Query: 1   MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRT 60
           MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRT
Sbjct: 78  MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRT 137

Query: 61  KVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRS 120
           KVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRS
Sbjct: 138 KVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRS 197

Query: 121 VRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG 165
           VRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG
Sbjct: 198 VRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG 241

[Close]
BLAST of MELO3C021834 vs. NCBI nr
Match: gi|46095228|gb|AAS80151.1| (ACT11D09.5 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 6.0e-93
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

Query: 1   MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRT 60
           MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRT
Sbjct: 78  MGNDRCDLSSFLTQGGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLLDPTPPSIFDVVMRT 137

Query: 61  KVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRS 120
           KVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRS
Sbjct: 138 KVLKKVRFLYLAGLAWPGLLVVCSVEWWKTILITFSGIAILRGWCSFLHEFRFSFACSRS 197

Query: 121 VRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG 165
           VRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG
Sbjct: 198 VRVTIKEFLLHPHFSDEGGFLWRSAVYAIICDILGERNDKVFMG 241

The following BLAST results are available for this feature:
BLAST of MELO3C021834 vs. TrEMBL
Match NameE-valueIdentityDescription
Q6E437_CUCME4.2e-93100.00ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1[more]
BLAST of MELO3C021834 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|46095228|gb|AAS80151.1|6.0e-93100.00ACT11D09.5 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU48978melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021834T1MELO3C021834T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU48978MU48978transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021834Cucurbita maxima (Rimu)cmameB493
MELO3C021834Cucurbita maxima (Rimu)cmameB534
MELO3C021834Cucurbita moschata (Rifu)cmomeB483
MELO3C021834Cucurbita moschata (Rifu)cmomeB524
MELO3C021834Wild cucumber (PI 183967)cpimeB096
MELO3C021834Cucumber (Chinese Long) v2cumeB086
MELO3C021834Watermelon (Charleston Gray)mewcgB076
MELO3C021834Watermelon (97103) v1mewmB087
MELO3C021834Cucurbita pepo (Zucchini)cpemeB672
MELO3C021834Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C021834Cucumber (Gy14) v2cgybmeB083
MELO3C021834Silver-seed gourdcarmeB0429
MELO3C021834Silver-seed gourdcarmeB1022
MELO3C021834Cucumber (Chinese Long) v3cucmeB103
MELO3C021834Watermelon (97103) v2mewmbB130
MELO3C021834Wax gourdmewgoB126
MELO3C021834Cucumber (Gy14) v1cgymeB524