MELO3C021754 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021754
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified
Location	chr12 : 16642415 .. 16642918 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACGACGGCGAAGGAAAGATCGGAGATGAGTGAACGTATGACGGAATCGACGATACACGATTCGACAAGCAAGAAGATGAAAGAAACAAAAGGTTTATCGAGCAAAGCTAGCGAAAGTGAGAGGCGTGAAAGAAAAACAGAATCAGACAACGGAAACAATGAGCGCAACAAATTCAAAAAAGTGGAAATGTTGATCTTCAATGAAGAGGATCCCGATTCATGGCTATTTGACGCAGACAGATATTTCCAAATCCATAAACTTAATGATTCTGAAAAAATGATAGTAGTAATGATAAGCTTCGAAGGATCGACACTAAACTGGTATAGATCCCAAGAAGAACATGAGAAGTTTACTGATTGGACGAATATGAAGAAAAGATTATTGATCCAATTCCAATCAATTCGGGAAGGATCAATATGTGGCCGATTCTTAAGGAACAAGCAAGAATCTACAGTAGAGGAATATCAGAACTTATTCGATAAGCTTGTAGCTCCTTAA

mRNA sequence

ATGGAGACGACGGCGAAGGAAAGATCGGAGATGAGTGAACGTATGACGGAATCGACGATACACGATTCGACAAGCAAGAAGATGAAAGAAACAAAAGGTTTATCGAGCAAAGCTAGCGAAAGTGAGAGGCGTGAAAGAAAAACAGAATCAGACAACGGAAACAATGAGCGCAACAAATTCAAAAAAGTGGAAATGTTGATCTTCAATGAAGAGGATCCCGATTCATGGCTATTTGACGCAGACAGATATTTCCAAATCCATAAACTTAATGATTCTGAAAAAATGATAGTAGTAATGATAAGCTTCGAAGGATCGACACTAAACTGGTATAGATCCCAAGAAGAACATGAGAAGTTTACTGATTGGACGAATATGAAGAAAAGATTATTGATCCAATTCCAATCAATTCGGGAAGGATCAATATGTGGCCGATTCTTAAGGAACAAGCAAGAATCTACAGTAGAGGAATATCAGAACTTATTCGATAAGCTTGTAGCTCCTTAA

Coding sequence (CDS)

ATGGAGACGACGGCGAAGGAAAGATCGGAGATGAGTGAACGTATGACGGAATCGACGATACACGATTCGACAAGCAAGAAGATGAAAGAAACAAAAGGTTTATCGAGCAAAGCTAGCGAAAGTGAGAGGCGTGAAAGAAAAACAGAATCAGACAACGGAAACAATGAGCGCAACAAATTCAAAAAAGTGGAAATGTTGATCTTCAATGAAGAGGATCCCGATTCATGGCTATTTGACGCAGACAGATATTTCCAAATCCATAAACTTAATGATTCTGAAAAAATGATAGTAGTAATGATAAGCTTCGAAGGATCGACACTAAACTGGTATAGATCCCAAGAAGAACATGAGAAGTTTACTGATTGGACGAATATGAAGAAAAGATTATTGATCCAATTCCAATCAATTCGGGAAGGATCAATATGTGGCCGATTCTTAAGGAACAAGCAAGAATCTACAGTAGAGGAATATCAGAACTTATTCGATAAGCTTGTAGCTCCTTAA

Protein sequence

METTAKERSEMSERMTESTIHDSTSKKMKETKGLSSKASESERRERKTESDNGNNERNKFKKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQEEHEKFTDWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP*

Homology

[Close]

BLAST of MELO3C021754 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-21
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1


Query: 23  STSKKMKETKGLSSKASESERRERKTESDNGNNERNKFKKVEMLIFNEEDPDSWLFDADR 82
           ST K+   T+ L     E E     +       +R KFKK+EM +FN EDPD W++ A+ 
Sbjct: 61  STGKRKIRTEDLVDGDEEGETS--LSLEPGAGQDRIKFKKLEMPVFNGEDPDGWIYKAEY 120

Query: 83  YFQIHKLNDSEKMIVVMISFEGSTLNWYRSQEEHEKFTDWTNMKKRLLIQFQSIREGSIC 142
           YFQ+H LN+ EK+ + ++S EG  L W+R  E  ++F  W  +K+R+  +F +   G+ C
Sbjct: 121 YFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRSWKELKERMYNRFCNREYGTGC 180

Query: 143 GRFLRNKQESTVEEYQNLFDKLVAP 168
            RFL  K E +V EY   F++L  P
Sbjct: 181 ARFLAIKHEGSVGEYLQRFEELSTP 203

[Close]

BLAST of MELO3C021754 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 53  GNNERNKFKKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRS 112
           GN E    ++VEM +F  E+PD W+F ADRYF  + L + EK++   +S +G  L+WY+ 
Sbjct: 763 GNGEWRGSRRVEMPVFTGENPDGWIFRADRYFATYGLTEEEKLVAAAMSLDGDALSWYQW 822

Query: 113 QEEHEKFTDWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
            +  E F  W N+K+RLL++F+  +EGS+C +FL  +Q+ TV  Y   F+ L  P
Sbjct: 823 TDSREVFGSWENLKRRLLLRFRLTQEGSLCEQFLAVRQQGTVAAYWREFEILETP 877

[Close]

BLAST of MELO3C021754 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-18
Identity = 51/152 (33.55%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 20  IHDSTSKKMKETKGLSSKASESERRERKTESDNG----NNERNKFKKVEMLIFNEEDPDS 79
           +++   ++MKE      K+ ES+   R+TE+  G    +++R+K+KK+E+ +FN E+P++
Sbjct: 12  MNEKEIREMKEMMLNLLKSMESDGG-RETETTPGFTVGSSDRSKYKKLEIPVFNGENPET 71

Query: 80  WLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQEEHEKFTDWTNMKKRLLIQFQS 139
           W++ A+ YF I++L D EK+ V ++SF    +NW+R     +K   W ++K+R+   F+S
Sbjct: 72  WIYRAEHYFDINELVDEEKVKVAVVSFGPDEVNWFRWSNNRKKVKTWEDLKRRMFEHFKS 131

Query: 140 IREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
             EGS+  R +R KQ+    +Y   F +  AP
Sbjct: 132 PGEGSLGARLIRIKQDGCYSDYLKKFLEYSAP 162

[Close]

BLAST of MELO3C021754 vs. TrEMBL
Match: W9QTX5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013924 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.5e-17
Identity = 41/107 (38.32%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 61  KKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQEEHEKFT 120
           ++VEM +F+ E+PD W   A+RYF ++K+ + EK+ V ++S EG  L W++ ++      
Sbjct: 865 RRVEMPVFDGENPDGWSIRAERYFAMNKMTEREKLDVAVVSLEGEALAWFQWEDGRSPIR 924

Query: 121 DWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
            W  +K  LL +F+ ++EGS+C +FL  +QE+TV +Y+  F+ L AP
Sbjct: 925 SWMVLKLMLLERFRPMQEGSLCEKFLSLRQETTVRDYRRQFEILAAP 971

[Close]

BLAST of MELO3C021754 vs. TrEMBL
Match: G9FIF5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 47/174 (27.01%), Postives = 87/174 (50.00%), Query Frame = 1


Query: 1   METTAKERSEMSERMTESTIHDSTSKKMKETKGLSSKASESERRERKTESDNGNNERN-- 60
           +E T K+  E   ++ E     + S++    +G   +  + E RE     D    E    
Sbjct: 13  LEKTTKKIGEDMAKLAERIDSSAESRREASERGSPDERRDWEEREGFVRGDGDGYEGGFR 72

Query: 61  -----KFKKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQ 120
                K K++++ IF   +PD W+   +RYF  ++L   E++   +++ +G  L W++ +
Sbjct: 73  GGGGWKAKRLDLPIFTGTNPDGWILRTERYFGFYRLAAEEQLEAAVVALDGEALLWFQWE 132

Query: 121 EEHEKFTDWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
             H   T W  MK  LL QF+    GS+  +++ + QE +V+EY++ F +L+AP
Sbjct: 133 HRHRPITGWPEMKAMLLRQFRDTALGSLQEQWMNHHQEGSVKEYKSRFIELMAP 186

[Close]

BLAST of MELO3C021754 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.9e-49
Identity = 103/167 (61.68%), Postives = 124/167 (74.25%), Query Frame = 1


Query: 1   METTAKERSEMSERMTESTIHDSTSKKMKETKGLSSKASESERRERKTESDNGNNERNKF 60
           ME  AKERS   ERM ES   +S + K K  K  SS+  E E   +K E D  +N+R+KF
Sbjct: 59  MEMNAKERSMAGERMNESDTQNSPTVKSKNDKASSSRDVE-EINTKKNEPDENSNDRSKF 118

Query: 61  KKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQEEHEKFT 120
           KKVEM +F  EDP+SWLF A+RYFQIHKL +SEKM+V  I F+G  LNWYR+QEE EKF 
Sbjct: 119 KKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTICFDGPALNWYRAQEEREKFV 178

Query: 121 DWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
            WTN+K+RLLI+FQS REG+  GRFLR +QE+TVEEY+NLFDKLVAP
Sbjct: 179 SWTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRNLFDKLVAP 224

[Close]

BLAST of MELO3C021754 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 4.2e-49
Identity = 99/173 (57.23%), Postives = 132/173 (76.30%), Query Frame = 1


Query: 1   METTAKERSEMSERMTESTIHDSTSKKMKETKGLSSKASESERR------ERKTESDNGN 60
           +ET++KERS MS + TE T+ +    K KE+   SS+  ES+R       ER+ +SD+  
Sbjct: 59  IETSSKERSMMSGQATEPTVKEFEKAKGKESDASSSRMIESDRNFRADGSERRNDSDDSF 118

Query: 61  NERNKFKKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQE 120
            +RNKFKK+EM IF  EDPDSWLF A+RYFQIH+L +SEK++V  +SF+G  LNWYRSQE
Sbjct: 119 PDRNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEKLLVSTVSFDGPALNWYRSQE 178

Query: 121 EHEKFTDWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
           E +KFT W+NMK+RLL++F+S ++G++ G+FLR KQESTVEEY NLFDK+VAP
Sbjct: 179 ERDKFTSWSNMKERLLVRFRSNKDGTLSGQFLRIKQESTVEEYINLFDKMVAP 231

[Close]

BLAST of MELO3C021754 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 4.2e-49
Identity = 101/173 (58.38%), Postives = 129/173 (74.57%), Query Frame = 1


Query: 1   METTAKERSEMSERMTESTIHDSTSKKMKETKGLSSKASES------ERRERKTESDNGN 60
           +ET +KERS MS   TES   +    K KE    SSKA +S      +R +R+ + D+G 
Sbjct: 59  IETNSKERSTMSRLETESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDRRIDGDDGV 118

Query: 61  NERNKFKKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYRSQE 120
           ++RNKFKK+EM +F  EDPDSWLF A+RYFQIHKL DSEKM+V  ISF+G  LNW+RSQE
Sbjct: 119 SDRNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEKMLVSTISFDGPALNWFRSQE 178

Query: 121 EHEKFTDWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
           E +KFT W+NMK+RLLI+F+S ++G++ G+FLR KQE TVEEY NLFDK+VAP
Sbjct: 179 ERDKFTSWSNMKERLLIRFRSNKDGTLSGQFLRIKQEGTVEEYINLFDKMVAP 231

[Close]

BLAST of MELO3C021754 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 73/176 (41.48%), Postives = 114/176 (64.77%), Query Frame = 1


Query: 1   METTAKERSEMSERMTESTIHDSTSKKMKETKGLSSKASESERRERKTESDNGNN----- 60
           M     ++ ++  +  E  I D++S   K T+G +S     +    +   D+  N     
Sbjct: 36  MNAQINKQQQVILKYIEGIIRDNSSAG-KTTEGSTSHTKSGDTILSEVVDDSKTNTRHED 95

Query: 61  ----ERNKFKKVEMLIFNEEDPDSWLFDADRYFQIHKLNDSEKMIVVMISFEGSTLNWYR 120
               +R+KFKKVEM +FN  +PD WLF ADR+F+IH     EK+ VV+ISF+GS L+WYR
Sbjct: 96  INPMDRSKFKKVEMPVFNGTNPDPWLFRADRFFKIH-----EKLTVVVISFDGSALDWYR 155

Query: 121 SQEEHEKFTDWTNMKKRLLIQFQSIREGSICGRFLRNKQESTVEEYQNLFDKLVAP 168
           S +E E F +W ++K+R+L++F++I++G++ G+F   KQE+TVEEY+N+FDKL+AP
Sbjct: 156 SNDELEAFKNWDDLKQRILVRFRTIQDGTLGGKFFSIKQETTVEEYRNIFDKLLAP 205

[Close]

BLAST of MELO3C021754 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 109.4 bits (272), Expect = 6.3e-21
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1


Query: 23  STSKKMKETKGLSSKASESERRERKTESDNGNNERNKFKKVEMLIFNEEDPDSWLFDADR 82
           ST K+   T+ L     E E     +       +R KFKK+EM +FN EDPD W++ A+ 
Sbjct: 61  STGKRKIRTEDLVDGDEEGETS--LSLEPGAGQDRIKFKKLEMPVFNGEDPDGWIYKAEY 120

Query: 83  YFQIHKLNDSEKMIVVMISFEGSTLNWYRSQEEHEKFTDWTNMKKRLLIQFQSIREGSIC 142
           YFQ+H LN+ EK+ + ++S EG  L W+R  E  ++F  W  +K+R+  +F +   G+ C
Sbjct: 121 YFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRSWKELKERMYNRFCNREYGTGC 180

Query: 143 GRFLRNKQESTVEEYQNLFDKLVAP 168
            RFL  K E +V EY   F++L  P
Sbjct: 181 ARFLAIKHEGSVGEYLQRFEELSTP 203

The following BLAST results are available for this feature:

BLAST of MELO3C021754 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC35_CUCME	4.4e-21	37.93	Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5B2I6_VITVI	2.8e-20	40.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]
E5GCI2_CUCME	7.7e-18	33.55	Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9QTX5_9ROSA	8.5e-17	38.32	Uncharacterized protein OS=Morus notabilis GN=L484_013924 PE=4 SV=1	[more]
G9FIF5_BETVU	3.6e-15	27.01	Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1	[more]

BLAST of MELO3C021754 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134102\|ref\|XP_008467029.1\|	1.9e-49	61.68	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	4.2e-49	57.23	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	4.2e-49	58.38	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659118578\|ref\|XP_008459193.1\|	1.1e-30	41.48	PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo]	[more]
gi\|307136196\|gb\|ADN34034.1\|	6.3e-21	37.93	gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021754T1	MELO3C021754T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 98..165 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021754	Watermelon (97103) v2	mewmbB141
MELO3C021754	Wax gourd	mewgoB164
MELO3C021754	Cucumber (Gy14) v1	cgymeB033
MELO3C021754	Cucurbita maxima (Rimu)	cmameB192
MELO3C021754	Cucurbita maxima (Rimu)	cmameB364
MELO3C021754	Cucurbita moschata (Rifu)	cmomeB179
MELO3C021754	Cucurbita moschata (Rifu)	cmomeB357
MELO3C021754	Wild cucumber (PI 183967)	cpimeB013
MELO3C021754	Cucumber (Chinese Long) v2	cumeB017
MELO3C021754	Watermelon (Charleston Gray)	mewcgB140
MELO3C021754	Watermelon (97103) v1	mewmB156
MELO3C021754	Cucurbita pepo (Zucchini)	cpemeB027
MELO3C021754	Cucurbita pepo (Zucchini)	cpemeB477
MELO3C021754	Bottle gourd (USVL1VR-Ls)	lsimeB180
MELO3C021754	Cucumber (Gy14) v2	cgybmeB012
MELO3C021754	Silver-seed gourd	carmeB0119
MELO3C021754	Cucumber (Chinese Long) v3	cucmeB012