MELO3C021718.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021718.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Ankyrin repeat family protein, putative
Location	chr12 : 16076715 .. 16077104 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAAGAGGAATGGAAGAAGAAAGTGAAGGAAGAATTAAAAGACAAGACGAAGAGTGTGTTTCCGATGACAGCGAACAGGGATACGACGTTGCATTTGGCAGTGTACAACGGAGAAGAGGAGCCAACAAGAGCATTGCTCAAAGGGATTTCGGAAATGGACGAAGCGTTTTGGAGGAACAGTGTAGGAAACACACAAGCTGCAACTGTAGGGAATCTGACTGCAGTTAAGCTGTTAGTTGAGTACAAGAAAGAAGATCTGGTGGCGGAGAATATTTATGGAGAAACTCCTCTGTTTAGAGCACCAAGATGTGGACATGTTGAGATTGTTAGTTATATTTTAGAAAATTGTGAAGATTTCTTCTCTCGATGGTCAAGGCCGCATTGA

mRNA sequence

ATGATAAAAGAGGAATGGAAGAAGAAAGTGAAGGAAGAATTAAAAGACAAGACGAAGAGTGTGTTTCCGATGACAGCGAACAGGGATACGACGTTGCATTTGGCAGTGTACAACGGAGAAGAGGAGCCAACAAGAGCATTGCTCAAAGGGATTTCGGAAATGGACGAAGCGTTTTGGAGGAACAGTGTAGGAAACACACAAGCTGCAACTGTAGGGAATCTGACTGCAGTTAAGCTGTTAGTTGAGTACAAGAAAGAAGATCTGGTGGCGGAGAATATTTATGGAGAAACTCCTCTGTTTAGAGCACCAAGATGTGGACATGTTGAGATTGTTAGTTATATTTTAGAAAATTGTGAAGATTTCTTCTCTCGATGGTCAAGGCCGCATTGA

Coding sequence (CDS)

ATGATAAAAGAGGAATGGAAGAAGAAAGTGAAGGAAGAATTAAAAGACAAGACGAAGAGTGTGTTTCCGATGACAGCGAACAGGGATACGACGTTGCATTTGGCAGTGTACAACGGAGAAGAGGAGCCAACAAGAGCATTGCTCAAAGGGATTTCGGAAATGGACGAAGCGTTTTGGAGGAACAGTGTAGGAAACACACAAGCTGCAACTGTAGGGAATCTGACTGCAGTTAAGCTGTTAGTTGAGTACAAGAAAGAAGATCTGGTGGCGGAGAATATTTATGGAGAAACTCCTCTGTTTAGAGCACCAAGATGTGGACATGTTGAGATTGTTAGTTATATTTTAGAAAATTGTGAAGATTTCTTCTCTCGATGGTCAAGGCCGCATTGA

Protein sequence

MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWRNSVGNTQAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILENCEDFFSRWSRPH

Homology

[Close]

BLAST of MELO3C021718.2 vs. NCBI nr
Match: XP_022142589.1 (uncharacterized protein LOC111012667, partial [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 2   IKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWRN 61
           IK +WK   +E L  K K +FPMT   DT +HLAVY+ +EEPT++LL   SE++  FW N
Sbjct: 15  IKGKWKNLPQEILIHKAKIMFPMTTGGDTAMHLAVYSRKEEPTKSLLAATSEVEREFWTN 74

Query: 62  SVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILENC 121
           S GNT   +AA VGNL AVKLLVEYKKEDL+A+NIYGETPLFRA R GH+ IV YILE+C
Sbjct: 75  SAGNTPLHEAAAVGNLAAVKLLVEYKKEDLLAQNIYGETPLFRAVRFGHLHIVEYILEDC 134

Query: 122 EDFFSR 125
           ED+FSR
Sbjct: 135 EDYFSR 140

[Close]

BLAST of MELO3C021718.2 vs. NCBI nr
Match: XP_022142681.1 (uncharacterized protein LOC111012737, partial [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 6.9e-32
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWR 60
           +IKEEW K + +EL DKT+ VFPMT + DT LHLAVY+GEEEPTRALL  +SE+DE FW+
Sbjct: 46  VIKEEW-KNLNQELIDKTRIVFPMTTSGDTALHLAVYSGEEEPTRALLATMSEIDEEFWK 105

Query: 61  NSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILEN 120
           N  GNT   +AA VGNL AVKLLVEY K DL+A NIY               IV Y LE+
Sbjct: 106 NRAGNTPLHEAAAVGNLAAVKLLVEYNKTDLLAMNIYXXXXXXXXXXXXXXHIVEYFLED 165

Query: 121 CEDFFSR 125
           CEDFFSR
Sbjct: 166 CEDFFSR 171

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BLAST of MELO3C021718.2 vs. NCBI nr
Match: KGN66841.1 (hypothetical protein Csa_1G700680 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 9.0e-32
Identity = 81/130 (62.31%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWR 60
           +IKEEW KKVKEELKD+TK VFPMTA+RDT LHLAVY+G EEP R LL GI EMDEAFWR
Sbjct: 14  VIKEEW-KKVKEELKDETKIVFPMTASRDTALHLAVYSGGEEPLRTLLVGIFEMDEAFWR 73

Query: 61  NSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILEN 120
           NS GNT   +AATVGNL AVKLLVEYKKED                             +
Sbjct: 74  NSAGNTPLHEAATVGNLAAVKLLVEYKKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 133

Query: 121 CEDFFSRWSR 128
           CEDFFSR SR
Sbjct: 134 CEDFFSRCSR 142

[Close]

BLAST of MELO3C021718.2 vs. NCBI nr
Match: XP_011648561.1 (PREDICTED: uncharacterized protein LOC101203890 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 9.0e-32
Identity = 81/130 (62.31%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWR 60
           +IKEEW KKVKEELKD+TK VFPMTA+RDT LHLAVY+G EEP R LL GI EMDEAFWR
Sbjct: 14  VIKEEW-KKVKEELKDETKIVFPMTASRDTALHLAVYSGGEEPLRTLLVGIFEMDEAFWR 73

Query: 61  NSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILEN 120
           NS GNT   +AATVGNL AVKLLVEYKKED                             +
Sbjct: 74  NSAGNTPLHEAATVGNLAAVKLLVEYKKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 133

Query: 121 CEDFFSRWSR 128
           CEDFFSR SR
Sbjct: 134 CEDFFSRCSR 142

[Close]

BLAST of MELO3C021718.2 vs. NCBI nr
Match: KGN66835.1 (hypothetical protein Csa_1G700130 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 80/130 (61.54%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWR 60
           +IKE+W KKVKEELKD+TK VFPMTA+RDT LHLAVY+G EEP R LL GI EMDEAFWR
Sbjct: 14  VIKEKW-KKVKEELKDETKIVFPMTASRDTVLHLAVYSGGEEPLRTLLVGIFEMDEAFWR 73

Query: 61  NSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILEN 120
           NS GNT   +AATVGNL AVKLLVEYKKED                             +
Sbjct: 74  NSAGNTPLHEAATVGNLAAVKLLVEYKKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 133

Query: 121 CEDFFSRWSR 128
           CEDFFSR SR
Sbjct: 134 CEDFFSRCSR 142

[Close]

BLAST of MELO3C021718.2 vs. TrEMBL
Match: tr|A0A0A0M3P4|A0A0A0M3P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700680 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.0e-32
Identity = 81/130 (62.31%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWR 60
           +IKEEW KKVKEELKD+TK VFPMTA+RDT LHLAVY+G EEP R LL GI EMDEAFWR
Sbjct: 14  VIKEEW-KKVKEELKDETKIVFPMTASRDTALHLAVYSGGEEPLRTLLVGIFEMDEAFWR 73

Query: 61  NSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILEN 120
           NS GNT   +AATVGNL AVKLLVEYKKED                             +
Sbjct: 74  NSAGNTPLHEAATVGNLAAVKLLVEYKKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 133

Query: 121 CEDFFSRWSR 128
           CEDFFSR SR
Sbjct: 134 CEDFFSRCSR 142

[Close]

BLAST of MELO3C021718.2 vs. TrEMBL
Match: tr|A0A0A0LY86|A0A0A0LY86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700130 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 80/130 (61.54%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGISEMDEAFWR 60
           +IKE+W KKVKEELKD+TK VFPMTA+RDT LHLAVY+G EEP R LL GI EMDEAFWR
Sbjct: 14  VIKEKW-KKVKEELKDETKIVFPMTASRDTVLHLAVYSGGEEPLRTLLVGIFEMDEAFWR 73

Query: 61  NSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSYILEN 120
           NS GNT   +AATVGNL AVKLLVEYKKED                             +
Sbjct: 74  NSAGNTPLHEAATVGNLAAVKLLVEYKKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 133

Query: 121 CEDFFSRWSR 128
           CEDFFSR SR
Sbjct: 134 CEDFFSRCSR 142

[Close]

BLAST of MELO3C021718.2 vs. TrEMBL
Match: tr|A0A0A0LY91|A0A0A0LY91_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700670 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 60/150 (40.00%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 1   MIKEEWKKKVKEELK-DKTKSV--FPMTANRDTTLHLAVYNGEEEPTRALL----KGISE 60
           MIKE+WKK  +E  K D+ +S   FPMT  +DT  HLA Y+G EEPTR LL    K  SE
Sbjct: 12  MIKEQWKKAAEEFTKEDELRSTLKFPMTTQKDTAWHLAAYSGGEEPTRTLLLLATKFESE 71

Query: 61  MD-------EAFWRNSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAP 120
            D       E FW+N  GNT   +AAT+GNL AVKLLVE                     
Sbjct: 72  EDIEEEETEEVFWKNKEGNTPLHEAATIGNLAAVKLLVEXXXXXXXXXXXXXXXXXXXXX 131

Query: 121 RCGHVEIVSYILENCEDFFSR----WSRPH 130
                       +NCED ++R    W+  H
Sbjct: 132 XXXXXXXXXXXXDNCEDLYTRSPFNWTAGH 161

[Close]

BLAST of MELO3C021718.2 vs. TrEMBL
Match: tr|A0A2K1YED9|A0A2K1YED9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_011G018100v3 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 53/131 (40.46%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 2   IKEEWKKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALL---KGISEMDEAF 61
           +K +WK+ +    +   K   P+T + DT LHLAV +  E+P + LL   KG S + EAF
Sbjct: 1   MKGDWKRMIDYCQEHFEKIRCPVTPSNDTVLHLAVISKTEQPLKVLLEIMKGRS-LPEAF 60

Query: 62  W--RNSVGNT---QAATVGNLTAVKLLVEYKKEDLVAENIYGETPLFRAPRCGHVEIVSY 121
              +N  GNT   +A   GN  AV LLVE   + L  +NIYGETPLF A       IV +
Sbjct: 61  LKRKNKFGNTALHEATIYGNYEAVMLLVERCADLLKEKNIYGETPLFTAAGFAETGIVEF 120

[Close]

BLAST of MELO3C021718.2 vs. TrEMBL
Match: tr|B9ICL8|B9ICL8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G119400v3 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 3   KEEW-KKKVKEELKDKTKSVFPMTANRDTTLHLAVYNGEEEPTRALLKGIS----EMDEA 62
           K +W   K   +  D    + P+T  +DT  HLAVY+ ++EP ++LL+ +S      +  
Sbjct: 17  KGDWDSMKTAYKGTDDKYMMSPITVLKDTAFHLAVYSKKDEPLQSLLRIVSGNSIPGNPC 76

Query: 63  FWRNSVGNT---QAATVGNLTAVKLLVEYKKED---------LVAENIYGETPLFRAPRC 116
             +N+ GNT   +A   GN+ AV+LL+++  ++         L  +N  GETPL+RA  C
Sbjct: 77  TLQNAYGNTVLHEAVFTGNMKAVELLLQFTPKEQCEYDPSKQLETKNELGETPLYRAASC 136

The following BLAST results are available for this feature:

BLAST of MELO3C021718.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142589.1	3.5e-36	63.49	uncharacterized protein LOC111012667, partial [Momordica charantia]	[more]
XP_022142681.1	6.9e-32	60.63	uncharacterized protein LOC111012737, partial [Momordica charantia]	[more]
KGN66841.1	9.0e-32	62.31	hypothetical protein Csa_1G700680 [Cucumis sativus]	[more]
XP_011648561.1	9.0e-32	62.31	PREDICTED: uncharacterized protein LOC101203890 [Cucumis sativus]	[more]
KGN66835.1	2.6e-31	61.54	hypothetical protein Csa_1G700130 [Cucumis sativus]	[more]

BLAST of MELO3C021718.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C021718.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C021718.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3P4\|A0A0A0M3P4_CUCSA	6.0e-32	62.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700680 PE=4 SV=1	[more]
tr\|A0A0A0LY86\|A0A0A0LY86_CUCSA	1.7e-31	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700130 PE=4 SV=1	[more]
tr\|A0A0A0LY91\|A0A0A0LY91_CUCSA	3.3e-14	40.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700670 PE=4 SV=1	[more]
tr\|A0A2K1YED9\|A0A2K1YED9_POPTR	1.4e-09	40.46	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_011G0...	[more]
tr\|B9ICL8\|B9ICL8_POPTR	2.7e-08	33.85	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G119400v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036770	Ankyrin_rpt-contain_sf
IPR020683	Ankyrin_rpt-contain_dom
IPR002110	Ankyrin_rpt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021718.2.1	MELO3C021718.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 94..123 e-value: 5.2 score: 16.0 coord: 27..56 e-value: 35.0 score: 13.3
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 32..117 e-value: 2.7E-8 score: 34.2
IPR020683	Ankyrin repeat-containing domain	PROSITE	PS50297	ANK_REP_REGION	coord: 27..117 score: 13.31
IPR020683	Ankyrin repeat-containing domain	CDD	cd00204	ANK	coord: 27..124 e-value: 1.59126E-13 score: 61.6306
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	G3DSA:1.25.40.20		coord: 2..120 e-value: 1.5E-15 score: 59.0
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	SSF48403	Ankyrin repeat	coord: 21..116
None	No IPR available	PANTHER	PTHR24177	FAMILY NOT NAMED	coord: 3..120
None	No IPR available	PANTHER	PTHR24177:SF71	SUBFAMILY NOT NAMED	coord: 3..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C021718.2	Csa1G700130	Cucumber (Chinese Long) v2	cumedB012
MELO3C021718.2	CSPI01G34090	Wild cucumber (PI 183967)	cpimedB022
MELO3C021718.2	Cucsa.332570	Cucumber (Gy14) v1	cgymedB544
MELO3C021718.2	CmoCh18G005510	Cucurbita moschata (Rifu)	cmomedB409
MELO3C021718.2	Lsi02G010740	Bottle gourd (USVL1VR-Ls)	lsimedB190
MELO3C021718.2	Cla97C01G009940	Watermelon (97103) v2	medwmbB131
MELO3C021718.2	Bhi08G000701	Wax gourd	medwgoB167
MELO3C021718.2	CsaV3_1G046040	Cucumber (Chinese Long) v3	cucmedB011

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021718.2	Cucumber (Gy14) v2	cgybmedB011
MELO3C021718.2	Cucurbita maxima (Rimu)	cmamedB213
MELO3C021718.2	Cucurbita maxima (Rimu)	cmamedB423
MELO3C021718.2	Watermelon (97103) v1	medwmB160
MELO3C021718.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C021718.2	Cucurbita pepo (Zucchini)	cpemedB562
MELO3C021718.2	Cucurbita pepo (Zucchini)	cpemedB585
MELO3C021718.2	Wild cucumber (PI 183967)	cpimedB013
MELO3C021718.2	Watermelon (Charleston Gray)	medwcgB132
MELO3C021718.2	Watermelon (97103) v1	medwmB151
MELO3C021718.2	Silver-seed gourd	carmedB0120
MELO3C021718.2	Silver-seed gourd	carmedB0236