MELO3C021712 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021712
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative nuclease HARBI1
Locationchr12 : 15977728 .. 15977877 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGA

mRNA sequence

ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGA

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGA

Protein sequence

MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE*
Homology
[Close]
BLAST of MELO3C021712 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-19
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE 50
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTD 331

[Close]
BLAST of MELO3C021712 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-07
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFT 49
           MT  D  D+ DE DST+ATT A++DI YIET+NEWSQWRD+LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]
BLAST of MELO3C021712 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.9 bits (250), Expect = 6.6e-19
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE 50
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTD 331

[Close]
BLAST of MELO3C021712 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-15
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE 50
           MTYCDDVDD DEGD  YATTT  E+I YIE TNEWSQWRD LAESMFT+
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTD 190

[Close]
BLAST of MELO3C021712 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 7.8e-12
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE 50
           MT CDD+DD DEG+S Y  T A EDI+YIETTNEWSQW D LAE++F E
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

[Close]
BLAST of MELO3C021712 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-10
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE 50
           +TY +++DDED+GDST+ATT+  +DI YIE +NEW++WRD LA SMFTE
Sbjct: 241 ITYINELDDEDDGDSTHATTSG-DDITYIEPSNEWTEWRDALASSMFTE 288

[Close]
BLAST of MELO3C021712 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-09
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 

Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTE 50
           MT  D  D+ DE DST+ATT A++DI YIET+NEWSQWRDDLAE MFT+
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTD 197

The following BLAST results are available for this feature:
BLAST of MELO3C021712 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME4.6e-1991.84Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME1.8e-0764.58Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C021712 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|6.6e-1991.84retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|7.6e-1579.59PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659126170|ref|XP_008463047.1|7.8e-1269.39PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659086609|ref|XP_008444024.1|7.3e-1063.27PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|2.8e-0969.39PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021712T1MELO3C021712T1mRNA