MELO3C021696 (gene) Melon (DHL92) v3.5.1

NameMELO3C021696
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr12 : 15713402 .. 15713554 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG

mRNA sequence

ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG

Coding sequence (CDS)

ATGACATATTGCGATGACGTTGACGACGTGGACGAGGGGGACTCCGCGTACGCGACGACCACCACTTCAGAAGACATCCAATACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCAACGAACTAACTGAATCGATGTTCACAGATTGGTAG

Protein sequence

MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW*
BLAST of MELO3C021696 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.8e-17
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MTYC+DV+D DEGDS YATTT SEDIQYIE TNEWSQWR++L  SMFTDW
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDW 332

BLAST of MELO3C021696 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MTYCDDVDDVDEGD AYATTTT E+I YIEMTNEWSQWR++L ESMFTDW
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDW 191

BLAST of MELO3C021696 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-16
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MTYC+DV+D DEGDS YATTT SEDIQYIE TNEWSQWR++L  SMFTDW
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDW 332

BLAST of MELO3C021696 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTD 50
           MT CDD+DDVDEG+SAY  T   EDI+YIE TNEWSQW ++L E++F +
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

BLAST of MELO3C021696 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 30/50 (60.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MT  +D+ D++E DSAYATTTT ++IQYIE TNEW+QW++EL+++MF +W
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEW 156

BLAST of MELO3C021696 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query: 1   MTYCDDVDDVDEGDSAYATTTTSEDIQYIEMTNEWSQWRNELTESMFTDW 51
           MT  D  D++DE DS +ATT  ++DI YIE +NEWSQWR++L E MFTDW
Sbjct: 150 MTNFDIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDDLAEEMFTDW 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME9.8e-1780.00Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|3.4e-1886.00PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|1.4e-1680.00retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659126170|ref|XP_008463047.1|1.2e-1063.27PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|2.0e-1060.00PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|1.8e-0860.00PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021696T1MELO3C021696T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None