MELO3C021675.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C021675.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPlasma membrane ATPase 4
Locationchr12 : 15424395 .. 15425099 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTGACTCAAGAATACATCCATTTGTATAATAATATTACGAGACTTTACATCACTCGACCAGGAGAAGCCGTGGGTCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTGTTTTACAATTTACAGAGATCAAACAACACAAGACTTCGTGATGTCGTAGATTATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAAGTACATGGAGGAGATACACAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGAGACGTTGAACTTGATGAAGTTGAACTTGATGAAGTTTACAATAATGTGGAATAAGTGCCTCCTATGACACAAACATAGAGCCAAACTGGTTATGGTAGTCCGATGACGGTGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCAGTACAGGATATTATGATGCAGGGGTCGGTCCATCGTCTTTATATATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACCAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTTGA

mRNA sequence

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTGACTCAAGAATACATCCATTTGTATAATAATATTACGAGACTTTACATCACTCGACCAGGAGAAGCCGTGGGTCATCTGAGATCAAACAACACAAGACTTCGTGATGTCGTAGATTATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAAGTACATGGAGGAGATACACAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGAGACGTTGAACTTGATGAAGTTGAACTTGATGAAGTTTACAATAATGTGGAATAAGTGCCTCCTATGACACAAACATAGAGCCAAACTGGTTATGGTAGTCCGATGACGGTGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCAGTACAGGATATTATGATGCAGGGGTCGGTCCATCGTCTTTATATATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACCAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTTGA

Coding sequence (CDS)

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTGACTCAAGAATACATCCATTTGTATAATAATATTACGAGACTTTACATCACTCGACCAGGAGAAGCCGTGGGTCATCTGAGATCAAACAACACAAGACTTCGTGATGTCGTAGATTATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAAGTACATGGAGGAGATACACAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGAGACGTTGA

Protein sequence

MAIGVSIQQFDMDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDICNNNEKYMEEIHNMYDLPIVPPPVHRRR
Homology
[Close]
BLAST of MELO3C021675.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0 

Query: 2  AIGVSIQQFDMDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDIC 61
          A G  I+QFDMDVTQEYIH Y NI++LYIT+PG A+ HLRSNNTRLR++ D PQQVL+IC
Sbjct: 11 ATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNIC 70

Query: 62 NNNEKYMEEIHNMYDLPIVPPPVHRRR 89
          N+NE+YME IH MYD+PIVP PV RRR
Sbjct: 71 NDNEQYMENIHYMYDVPIVPAPVQRRR 97

[Close]
BLAST of MELO3C021675.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 8.6e-26
Identity = 57/77 (74.03%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 12 MDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDICNNNEKYMEEI 71
          MDVTQEYIH Y NI++LYIT+PG A+ HLRSNNTRLR++ D PQQVL+ICN+NE+YME I
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 72 HNMYDLPIVPPPVHRRR 89
          H MYD+PIVP PV RRR
Sbjct: 61 HYMYDVPIVPAPVQRRR 77

[Close]
BLAST of MELO3C021675.2 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.6e-17
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 2   AIGVSIQQFDMDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDIC 61
           A G  I+QFDMDVTQEYI+ Y NI++LYIT+PG A+ HLRSNN RLR+V D PQQVL+IC
Sbjct: 102 ATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNIC 161

Query: 62  NNNE 66
           N+NE
Sbjct: 162 NDNE 165

[Close]
BLAST of MELO3C021675.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 41  RSNNTRLRDVVDYPQQVLDICNNNEKYMEEIHNMYDLPIVPPPVHRRR 89
           RS N RL++V D PQQVL+ICN+NE+YME IH MY++ IVP  V RRR
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRR 209

[Close]
BLAST of MELO3C021675.2 vs. NCBI nr
Match: XP_008461671.1 (PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 41  RSNNTRLRDVVDYPQQVLDICNNNEKYMEEIHNMYDLPIVPPPVHRRR 89
           RS N RL++V D PQQVL+ICN+NE+YME IH MY++ IVP  V RRR
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRR 202

[Close]
BLAST of MELO3C021675.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0 

Query: 2  AIGVSIQQFDMDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDIC 61
          A G  I+QFDMDVTQEYIH Y NI++LYIT+PG A+ HLRSNNTRLR++ D PQQVL+IC
Sbjct: 11 ATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNIC 70

Query: 62 NNNEKYMEEIHNMYDLPIVPPPVHRRR 89
          N+NE+YME IH MYD+PIVP PV RRR
Sbjct: 71 NDNEQYMENIHYMYDVPIVPAPVQRRR 97

[Close]
BLAST of MELO3C021675.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.7e-26
Identity = 57/77 (74.03%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 12 MDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDICNNNEKYMEEI 71
          MDVTQEYIH Y NI++LYIT+PG A+ HLRSNNTRLR++ D PQQVL+ICN+NE+YME I
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 72 HNMYDLPIVPPPVHRRR 89
          H MYD+PIVP PV RRR
Sbjct: 61 HYMYDVPIVPAPVQRRR 77

[Close]
BLAST of MELO3C021675.2 vs. TrEMBL
Match: tr|A0A1S3CIU3|A0A1S3CIU3_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 2   AIGVSIQQFDMDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDIC 61
           A G  I+QFDMDVTQEYI+ Y NI++LYIT+PG A+ HLRSNN RLR+V D PQQVL+IC
Sbjct: 102 ATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNIC 161

Query: 62  NNNE 66
           N+NE
Sbjct: 162 NDNE 165

[Close]
BLAST of MELO3C021675.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 41  RSNNTRLRDVVDYPQQVLDICNNNEKYMEEIHNMYDLPIVPPPVHRRR 89
           RS N RL++V D PQQVL+ICN+NE+YME IH MY++ IVP  V RRR
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRR 202

[Close]
BLAST of MELO3C021675.2 vs. TrEMBL
Match: tr|A0A1S3CF42|A0A1S3CF42_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 41  RSNNTRLRDVVDYPQQVLDICNNNEKYMEEIHNMYDLPIVPPPVHRRR 89
           RS N RL++V D PQQVL+ICN+NE+YME IH MY++ IVP  V RRR
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRR 209

The following BLAST results are available for this feature:
BLAST of MELO3C021675.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.13.7e-2972.41PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.18.6e-2674.03PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008463092.15.6e-1770.31PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
XP_008461670.11.8e-0764.58PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo][more]
XP_008461671.11.8e-0764.58PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo][more]
BLAST of MELO3C021675.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C021675.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C021675.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME2.5e-2972.41mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME5.7e-2674.03GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3CIU3|A0A1S3CIU3_CUCME3.7e-1770.31serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A1S3CF98|A0A1S3CF98_CUCME1.2e-0764.58CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
tr|A0A1S3CF42|A0A1S3CF42_CUCME1.2e-0764.58CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:0015992 proton transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021675.2.1MELO3C021675.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021675.2Cucurbita pepo (Zucchini)cpemedB562
MELO3C021675.2Bottle gourd (USVL1VR-Ls)lsimedB186
MELO3C021675.2Cucumber (Chinese Long) v3cucmedB025