MELO3C021575 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021575
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit alpha
Locationchr9 : 4004164 .. 4006137 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTGTAATTCTTTCTACTTCTCCGAGTATAATGACAGATCAAGAAGCTCGACTACAGGGAACCAACGGTGAAATATTTTGTTATATATGTTAATCTTTATGATATTCAAATTATACACATAACATCCCTATTTGTAAAAAAAGAGAAGAAAGAAAAAAAAGAAAAGAGTGGTTTCATAGTTTATAATATCACTCCCCTTTCATTAATTGAGACTTTGAAAGGTGTTTCGTTTGGAATGATAGAGCAGAAAAGGATTTCTGAAGGTTGCATTACTGAACCACTTACCAATTATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAGTTCTAGATTACGTTTTAGGAAGGATTCGACATAGTTTGATTCATATAATAAGTAATAGAGAGTTAAAATTTTAGCAAGTTGTTACGATTCAACAAAGACTCGAAAACATATAATTTATAGACTACAAAACAAAGATTCGAATGATTAGGTGAAGTAGTTTTTTCATGTGCAATATTCTTTTTTTTGTAGGGAGATACAATTTGAAATAGAACATTTCAAGAAACTGATTTTCTTCCAATAAGTAGATTTGGAATTCGGATAAAAAAAAAGAATCAAAAATATGAAAATAAGGGCTTCCATTAGGAGAATTTGTGAAAAATGTCACCTGATCTTTAGTCAGAGACGAATTATGGTAAGTTGTTCCAATCTGAGACATGAATAAAGACAAGGATAATCTTTAAAAAGGAAAAAAAAAAGGAGGACAGGACCCTAAAGGCCACCCACAATATACACATAAAAAGAAATGAAAGGATCCATTTTGACATAGAAATGGATATATCCATATATCTCTGACTTAGATTTATGAGATGAGAAAATATGGCAAAACCCATACCAAGAATCGGTTCATGTAGAAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTATTACAGATGTAATGGGTCAATCAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACTGCAACAGGAAATGCTATTCAGGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATGCAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGTAACCCTTATGCCACATAATGGCTGTAGTCCCCTTAAAAAATGATGTGTGTCAAAATCAACGTTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTTATAAAAATATTACTATGGTTTGAGAGAAAATCAAAGTATCGACTCGGACACTAAAGTGGAAATGTGTTGAATCAAGAGCAGATAGTAAGTATCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGCTGGGGATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGATGGAACATGTATCATATGTGCAAAATTTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAATACATGAAATTTGAATGAATTTGAAAGAAATTGTATTGAGAAATAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATACGTAGCTGCTCAAGACATCATCTTACCACCTTTGGTGGAAATCGTTGATAATACACAACATATAGCTAACCTAATGGAACCAATGAATTTTTGTATTGAATTCAAGATTGAGAGGAATCATGGATATCATATACAAACGTCAAAGAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

mRNA sequence

ATGGGGATTGTAATTCTTTCTACTTCTCCGAGTATAATGACAGATCAAGAAGCTCGACTACAGGGAACCAACGATGTAATGGGTCAATCAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACTGCAACAGGAAATGCTATTCAGGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATGCAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGGTCCTAGATACGTAGCTGCTCAAGACATCATCTTACCACCTTTGGTGGAAATCGTTGATAATACACAACATATAGCTAACCTAATGGAACCAATGAATTTTTGTATTGAATTCAAGATTGAGAGGAATCATGGATATCATATACAAACGTCAAAGAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

Coding sequence (CDS)

ATGGGGATTGTAATTCTTTCTACTTCTCCGAGTATAATGACAGATCAAGAAGCTCGACTACAGGGAACCAACGATGTAATGGGTCAATCAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACTGCAACAGGAAATGCTATTCAGGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATGCAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGGTCCTAGATACGTAGCTGCTCAAGACATCATCTTACCACCTTTGGTGGAAATCGTTGATAATACACAACATATAGCTAACCTAATGGAACCAATGAATTTTTGTATTGAATTCAAGATTGAGAGGAATCATGGATATCATATACAAACGTCAAAGAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

Protein sequence

MGIVILSTSPSIMTDQEARLQGTNDVMGQSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS*
Homology
[Close]
BLAST of MELO3C021575 vs. Swiss-Prot
Match: RPOA_CUCSA (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.7e-48
Identity = 110/196 (56.12%), Postives = 124/196 (63.27%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQ-RMQRAEVM 79
           ++G  D +G    +++     GTC  +      P    T  G  IQ  V +  M   E++
Sbjct: 38  MKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVG--IQESVHEILMNLKEIV 97

Query: 80  IKGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPM 139
           ++    G RDA++               GP  V AQDIILPP VEIVDNTQHIANLMEP+
Sbjct: 98  LRSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLMEPI 157

Query: 140 NFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEI 199
           N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHSY+NGNEKQ  LFLEI
Sbjct: 158 NLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 217

Query: 200 WTNGSFTPKEALHETS 210
           WTNGS TPKEALHE S
Sbjct: 218 WTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. Swiss-Prot
Match: RPOA_SOYBN (DNA-directed RNA polymerase subunit alpha OS=Glycine max GN=rpoA PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-44
Identity = 86/108 (79.63%), Postives = 90/108 (83.33%), Query Frame = 1 

Query: 102 GPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYP 161
           GP YV AQDIILPP VEIVDNTQHIAN+ EP+N CIE KIERN GY I+T KNFQD SYP
Sbjct: 112 GPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYP 171

Query: 162 MDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           +DA FM VRNVNHSIHSY+NGNEKQ  LFLEIWTNGS TPKEAL+E S
Sbjct: 172 IDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS 219

[Close]
BLAST of MELO3C021575 vs. Swiss-Prot
Match: RPOA_MORIN (DNA-directed RNA polymerase subunit alpha OS=Morus indica GN=rpoA PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.3e-43
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 102 GPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYP 161
           GP YV AQDIILPP VEIVDNTQHIANL EP+  CIE +IERN GY I+T  NFQ+ SYP
Sbjct: 112 GPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYP 171

Query: 162 MDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           +DA+FM VRN NHSIHSY+NGNE Q  LFLEIWTNGS TPKEALHE S
Sbjct: 172 IDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. Swiss-Prot
Match: RPOA_ATRBE (DNA-directed RNA polymerase subunit alpha OS=Atropa belladonna GN=rpoA PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42
Identity = 83/108 (76.85%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 102 GPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYP 161
           GP YV AQDIILPP VEIVDNTQHIA+L EP++FCI  +IERN GY I+T +NFQD SYP
Sbjct: 112 GPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYP 171

Query: 162 MDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           +DA+FM VRN NHSIHSY NGNEKQ  LFLEIWTNGS TPKEALHE S
Sbjct: 172 IDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. Swiss-Prot
Match: RPOA_EUCGG (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus GN=rpoA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.1e-42
Identity = 83/108 (76.85%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 102 GPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYP 161
           GP  V AQDIILP  VEIVDNTQ+IANL EP+N CI  +IERN GYHI+T KNFQD SYP
Sbjct: 112 GPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYP 171

Query: 162 MDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           +DA+FM VRN NHSIHSY NGNEKQ  LFLEIWTNGS TPKEALHE S
Sbjct: 172 IDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. TrEMBL
Match: A0A0D2N195_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G205100 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 112/192 (58.33%), Postives = 133/192 (69.27%), Query Frame = 1 

Query: 25  DVMGQSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQR------MQRAEVMIKGL 84
           D+ G+ ISWSSAGTCGFKGTRRGTPFAAQT T ++IQ VVDQ       M   +++++G 
Sbjct: 45  DLRGRVISWSSAGTCGFKGTRRGTPFAAQTTTEDSIQAVVDQESVHKILMNLKQIVLRGN 104

Query: 85  GLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCI 144
             G R+A + A             GP YV AQDIILPP VE VDNTQH+ANL +P++ CI
Sbjct: 105 FFGTRNAFICA------------KGPGYVTAQDIILPPFVETVDNTQHVANLTKPIDLCI 164

Query: 145 EFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNG 204
             +IERN GY  +  KNF D SYP+D +FM +RNVNHSIH Y N NEK+  LFLEIWTNG
Sbjct: 165 GLQIERNRGYDTKMPKNFHDRSYPIDVVFMPIRNVNHSIHFYGNDNEKEEILFLEIWTNG 224

Query: 205 SFTPKEALHETS 210
           S T KEALHE S
Sbjct: 225 SLTLKEALHEAS 224

[Close]
BLAST of MELO3C021575 vs. TrEMBL
Match: W8E706_9ROSI (DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix GN=rpoA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.4e-46
Identity = 110/196 (56.12%), Postives = 126/196 (64.29%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQ-RMQRAEVM 79
           ++G  D +G    +++     GTC  +      P    T  G  IQ  V +  M   E++
Sbjct: 38  MKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVG--IQESVHEILMNLKEIV 97

Query: 80  IKGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPM 139
           ++    G RDA++               GP  V AQDIILPP VEIVDNTQHIANLMEP+
Sbjct: 98  LRSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLMEPI 157

Query: 140 NFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEI 199
           N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHSY+NGNEKQ  LFLEI
Sbjct: 158 NLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 217

Query: 200 WTNGSFTPKEALHETS 210
           WTNGS TPKEALHE S
Sbjct: 218 WTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. TrEMBL
Match: G3ETS9_CUCME (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. melo GN=rpoA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.4e-46
Identity = 110/196 (56.12%), Postives = 126/196 (64.29%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQ-RMQRAEVM 79
           ++G  D +G    +++     GTC  +      P    T  G  IQ  V +  M   E++
Sbjct: 38  MKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVG--IQESVHEILMNLKEIV 97

Query: 80  IKGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPM 139
           ++    G RDA++               GP  V AQDIILPP VEIVDNTQHIANL EP+
Sbjct: 98  LRSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI 157

Query: 140 NFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEI 199
           NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHSY+NGNEKQ  LFLEI
Sbjct: 158 NFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 217

Query: 200 WTNGSFTPKEALHETS 210
           WTNGS TPKEALHE S
Sbjct: 218 WTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. TrEMBL
Match: A0A0Q3LWX6_BRADI (Uncharacterized protein (Fragment) OS=Brachypodium distachyon GN=BRADI_3g27306 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-45
Identity = 105/217 (48.39%), Postives = 132/217 (60.83%), Query Frame = 1 

Query: 28  GQSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQRMQRAEVMIKGLGLGRDATLR 87
           G+ + WSSAGTCGFK +R+ +P+A Q    +AI  V    +QRAEVM+KG G GRDA LR
Sbjct: 33  GRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIHTV---GLQRAEVMVKGAGSGRDAALR 92

Query: 88  AIWTSG---------ILFSFIRD--------------------------GPRYVAAQDII 147
           AI  S          IL   I+                           GP+ + AQDII
Sbjct: 93  AIARSDSKRLYYGRFILSPLIKGQADTVEGTCITRAKFGSVPHEYSTIAGPKCITAQDII 152

Query: 148 LPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNV 207
           LPP +E++D  Q IANL EP++FCI+ +I+R+ GY  +  KN+QD SYP+D + M VRNV
Sbjct: 153 LPPSIEVIDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDVVSMPVRNV 212

Query: 208 NHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           N+SI S  NGNEK   LFLEIWTNGS TPKEAL+E S
Sbjct: 213 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEAS 246

[Close]
BLAST of MELO3C021575 vs. TrEMBL
Match: X2F861_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 104/195 (53.33%), Postives = 122/195 (62.56%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQRMQRAEVMI 79
           ++G  D +G    +++     GTC  +      P    T  G   + V +  M   E+++
Sbjct: 38  MKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHXYSTIVGXQ-ESVHEIXMNLKEIVL 97

Query: 80  KGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMN 139
           +    G RDA++               GP  V AQDIILPP VEIVDNTQHIANL EP+N
Sbjct: 98  RSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN 157

Query: 140 FCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIW 199
            CIE KIERN GY IQT  NFQDASYP+DAIFM VRN NHSIHSY+NGNEKQ  LFLEIW
Sbjct: 158 LCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEXLFLEIW 217

Query: 200 TNGSFTPKEALHETS 210
           TNGS TPKEALHE S
Sbjct: 218 TNGSXTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. TAIR10
Match: ATCG00740.1 (ATCG00740.1 RNA polymerase subunit alpha)

HSP 1 Score: 167.9 bits (424), Expect = 6.5e-42
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 102 GPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYP 161
           GP Y+ A+DIILPP VEI+DNTQHIA L EP++ CIE KIERN GY ++ S NF+D SYP
Sbjct: 112 GPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP 171

Query: 162 MDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           +DA+FM V N NHSIHSY NGNEKQ  LFLEIWTNGS TPKEALH+ S
Sbjct: 172 IDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 219

[Close]
BLAST of MELO3C021575 vs. TAIR10
Match: ATCG00750.1 (ATCG00750.1 ribosomal protein S11)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 62/77 (80.52%), Postives = 64/77 (83.12%), Query Frame = 1 

Query: 25  DVMGQSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQRMQRAEVMIKGLGLGRDA 84
           DV G+ ISWSSAGTCGF+GTRRGTPFAAQTA GNAI+ VVDQ MQRAEV IKG GLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDA 104

Query: 85  TLRAIWTSGILFSFIRD 102
            LRAI  SGIL SF+RD
Sbjct: 105 ALRAIRRSGILLSFVRD 121

[Close]
BLAST of MELO3C021575 vs. NCBI nr
Match: gi|763758371|gb|KJB25702.1| (hypothetical protein B456_004G205100 [Gossypium raimondii])

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 112/192 (58.33%), Postives = 133/192 (69.27%), Query Frame = 1 

Query: 25  DVMGQSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQR------MQRAEVMIKGL 84
           D+ G+ ISWSSAGTCGFKGTRRGTPFAAQT T ++IQ VVDQ       M   +++++G 
Sbjct: 45  DLRGRVISWSSAGTCGFKGTRRGTPFAAQTTTEDSIQAVVDQESVHKILMNLKQIVLRGN 104

Query: 85  GLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCI 144
             G R+A + A             GP YV AQDIILPP VE VDNTQH+ANL +P++ CI
Sbjct: 105 FFGTRNAFICA------------KGPGYVTAQDIILPPFVETVDNTQHVANLTKPIDLCI 164

Query: 145 EFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNG 204
             +IERN GY  +  KNF D SYP+D +FM +RNVNHSIH Y N NEK+  LFLEIWTNG
Sbjct: 165 GLQIERNRGYDTKMPKNFHDRSYPIDVVFMPIRNVNHSIHFYGNDNEKEEILFLEIWTNG 224

Query: 205 SFTPKEALHETS 210
           S T KEALHE S
Sbjct: 225 SLTLKEALHEAS 224

[Close]
BLAST of MELO3C021575 vs. NCBI nr
Match: gi|68164836|ref|YP_247632.1| (RNA polymerase alpha subunit [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 9.2e-46
Identity = 110/196 (56.12%), Postives = 126/196 (64.29%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQ-RMQRAEVM 79
           ++G  D +G    +++     GTC  +      P    T  G  IQ  V +  M   E++
Sbjct: 38  MKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVG--IQESVHEILMNLKEIV 97

Query: 80  IKGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPM 139
           ++    G RDA++               GP  V AQDIILPP VEIVDNTQHIANLMEP+
Sbjct: 98  LRSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLMEPI 157

Query: 140 NFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEI 199
           N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHSY+NGNEKQ  LFLEI
Sbjct: 158 NLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 217

Query: 200 WTNGSFTPKEALHETS 210
           WTNGS TPKEALHE S
Sbjct: 218 WTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. NCBI nr
Match: gi|346578223|ref|YP_004841815.1| (RNA polymerase alpha subunit [Cucumis melo subsp. melo])

HSP 1 Score: 192.2 bits (487), Expect = 9.2e-46
Identity = 110/196 (56.12%), Postives = 126/196 (64.29%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQ-RMQRAEVM 79
           ++G  D +G    +++     GTC  +      P    T  G  IQ  V +  M   E++
Sbjct: 38  MKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVG--IQESVHEILMNLKEIV 97

Query: 80  IKGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPM 139
           ++    G RDA++               GP  V AQDIILPP VEIVDNTQHIANL EP+
Sbjct: 98  LRSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI 157

Query: 140 NFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEI 199
           NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHSY+NGNEKQ  LFLEI
Sbjct: 158 NFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 217

Query: 200 WTNGSFTPKEALHETS 210
           WTNGS TPKEALHE S
Sbjct: 218 WTNGSLTPKEALHEAS 219

[Close]
BLAST of MELO3C021575 vs. NCBI nr
Match: gi|944061239|gb|KQJ96829.1| (hypothetical protein BRADI_3g27306, partial [Brachypodium distachyon])

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-45
Identity = 105/217 (48.39%), Postives = 132/217 (60.83%), Query Frame = 1 

Query: 28  GQSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQRMQRAEVMIKGLGLGRDATLR 87
           G+ + WSSAGTCGFK +R+ +P+A Q    +AI  V    +QRAEVM+KG G GRDA LR
Sbjct: 33  GRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIHTV---GLQRAEVMVKGAGSGRDAALR 92

Query: 88  AIWTSG---------ILFSFIRD--------------------------GPRYVAAQDII 147
           AI  S          IL   I+                           GP+ + AQDII
Sbjct: 93  AIARSDSKRLYYGRFILSPLIKGQADTVEGTCITRAKFGSVPHEYSTIAGPKCITAQDII 152

Query: 148 LPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNV 207
           LPP +E++D  Q IANL EP++FCI+ +I+R+ GY  +  KN+QD SYP+D + M VRNV
Sbjct: 153 LPPSIEVIDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDVVSMPVRNV 212

Query: 208 NHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 210
           N+SI S  NGNEK   LFLEIWTNGS TPKEAL+E S
Sbjct: 213 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEAS 246

[Close]
BLAST of MELO3C021575 vs. NCBI nr
Match: gi|595646373|gb|AHM89817.1| (RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 184.1 bits (466), Expect = 2.5e-43
Identity = 104/195 (53.33%), Postives = 122/195 (62.56%), Query Frame = 1 

Query: 20  LQGTNDVMG----QSISWSSAGTCGFKGTRRGTPFAAQTATGNAIQVVVDQRMQRAEVMI 79
           ++G  D +G    +++     GTC  +      P    T  G   + V +  M   E+++
Sbjct: 38  MKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHXYSTIVGXQ-ESVHEIXMNLKEIVL 97

Query: 80  KGLGLG-RDATLRAIWTSGILFSFIRDGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMN 139
           +    G RDA++               GP  V AQDIILPP VEIVDNTQHIANL EP+N
Sbjct: 98  RSNLYGTRDASICV------------KGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN 157

Query: 140 FCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIW 199
            CIE KIERN GY IQT  NFQDASYP+DAIFM VRN NHSIHSY+NGNEKQ  LFLEIW
Sbjct: 158 LCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEXLFLEIW 217

Query: 200 TNGSFTPKEALHETS 210
           TNGS TPKEALHE S
Sbjct: 218 TNGSXTPKEALHEAS 219

The following BLAST results are available for this feature:
BLAST of MELO3C021575 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOA_CUCSA5.7e-4856.12DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1[more]
RPOA_SOYBN1.3e-4479.63DNA-directed RNA polymerase subunit alpha OS=Glycine max GN=rpoA PE=3 SV=1[more]
RPOA_MORIN7.3e-4375.93DNA-directed RNA polymerase subunit alpha OS=Morus indica GN=rpoA PE=3 SV=1[more]
RPOA_ATRBE1.6e-4276.85DNA-directed RNA polymerase subunit alpha OS=Atropa belladonna GN=rpoA PE=3 SV=1[more]
RPOA_EUCGG6.1e-4276.85DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus... [more]
BLAST of MELO3C021575 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2N195_GOSRA2.1e-5258.33Uncharacterized protein OS=Gossypium raimondii GN=B456_004G205100 PE=3 SV=1[more]
W8E706_9ROSI6.4e-4656.12DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix GN=rpoA PE=3 SV=1[more]
G3ETS9_CUCME6.4e-4656.12DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. melo GN=rpoA PE... [more]
A0A0Q3LWX6_BRADI1.4e-4548.39Uncharacterized protein (Fragment) OS=Brachypodium distachyon GN=BRADI_3g27306 P... [more]
X2F861_LAGSI1.7e-4353.33DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
BLAST of MELO3C021575 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00740.16.5e-4271.30ATCG00740.1 RNA polymerase subunit alpha[more]
ATCG00750.11.4e-2880.52ATCG00750.1 ribosomal protein S11[more]
BLAST of MELO3C021575 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763758371|gb|KJB25702.1|2.9e-5258.33hypothetical protein B456_004G205100 [Gossypium raimondii][more]
gi|68164836|ref|YP_247632.1|9.2e-4656.12RNA polymerase alpha subunit [Cucumis sativus][more]
gi|346578223|ref|YP_004841815.1|9.2e-4656.12RNA polymerase alpha subunit [Cucumis melo subsp. melo][more]
gi|944061239|gb|KQJ96829.1|2.0e-4548.39hypothetical protein BRADI_3g27306, partial [Brachypodium distachyon][more]
gi|595646373|gb|AHM89817.1|2.5e-4353.33RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
IPR009025RBP11-like_dimer
IPR011262DNA-dir_RNA_pol_insert
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0046983protein dimerization activity
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006412 translation
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021575T1MELO3C021575T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11GENE3DG3DSA:3.30.420.80coord: 25..101
score: 5.5
IPR001971Ribosomal protein S11HAMAPMF_01310Ribosomal_S11coord: 1..127
score: 13
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 24..101
score: 2.2
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF01193RNA_pol_Lcoord: 110..207
score: 1.
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainunknownSSF55257RBP11-like subunits of RNA polymerasecoord: 168..207
score: 1.0
IPR011262DNA-directed RNA polymerase, insert domainGENE3DG3DSA:2.170.120.12coord: 102..163
score: 3.4
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 99..148
score: 1.
IPR011262DNA-directed RNA polymerase, insert domainunknownSSF56553Insert subdomain of RNA polymerase alpha subunitcoord: 87..167
score: 2.09
NoneNo IPR availableGENE3DG3DSA:3.30.1360.10coord: 164..207
score: 4.5
NoneNo IPR availableGENE3DG3DSA:3.30.1490.10coord: 1..23
score: 1.
NoneNo IPR availablePANTHERPTHR32108FAMILY NOT NAMEDcoord: 94..209
score: 1.3
NoneNo IPR availablePANTHERPTHR32108:SF0DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 94..209
score: 1.3
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 25..102
score: 1.57

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021575Silver-seed gourdcarmeB0260
MELO3C021575Silver-seed gourdcarmeB0370
MELO3C021575Silver-seed gourdcarmeB0441
MELO3C021575Silver-seed gourdcarmeB0682
MELO3C021575Wax gourdmewgoB022
MELO3C021575Cucumber (Chinese Long) v3cucmeB000
MELO3C021575Cucumber (Chinese Long) v3cucmeB164
MELO3C021575Cucumber (Chinese Long) v3cucmeB359
MELO3C021575Watermelon (97103) v2mewmbB013
MELO3C021575Watermelon (97103) v2mewmbB038
MELO3C021575Wax gourdmewgoB002
MELO3C021575Wax gourdmewgoB044
MELO3C021575Melon (DHL92) v3.5.1memeB012
MELO3C021575Melon (DHL92) v3.5.1memeB013
MELO3C021575Cucumber (Gy14) v1cgymeB114
MELO3C021575Cucumber (Gy14) v1cgymeB336
MELO3C021575Cucumber (Gy14) v1cgymeB549
MELO3C021575Cucurbita maxima (Rimu)cmameB081
MELO3C021575Cucurbita maxima (Rimu)cmameB212
MELO3C021575Cucurbita maxima (Rimu)cmameB251
MELO3C021575Cucurbita maxima (Rimu)cmameB634
MELO3C021575Cucurbita moschata (Rifu)cmomeB075
MELO3C021575Cucurbita moschata (Rifu)cmomeB196
MELO3C021575Cucurbita moschata (Rifu)cmomeB239
MELO3C021575Cucurbita moschata (Rifu)cmomeB624
MELO3C021575Wild cucumber (PI 183967)cpimeB000
MELO3C021575Wild cucumber (PI 183967)cpimeB162
MELO3C021575Wild cucumber (PI 183967)cpimeB350
MELO3C021575Cucumber (Chinese Long) v2cumeB005
MELO3C021575Cucumber (Chinese Long) v2cumeB172
MELO3C021575Cucumber (Chinese Long) v2cumeB360
MELO3C021575Watermelon (Charleston Gray)mewcgB002
MELO3C021575Watermelon (Charleston Gray)mewcgB006
MELO3C021575Watermelon (Charleston Gray)mewcgB017
MELO3C021575Watermelon (97103) v1mewmB003
MELO3C021575Watermelon (97103) v1mewmB007
MELO3C021575Cucurbita pepo (Zucchini)cpemeB155
MELO3C021575Cucurbita pepo (Zucchini)cpemeB358
MELO3C021575Cucurbita pepo (Zucchini)cpemeB467
MELO3C021575Cucurbita pepo (Zucchini)cpemeB550
MELO3C021575Cucurbita pepo (Zucchini)cpemeB594
MELO3C021575Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C021575Bottle gourd (USVL1VR-Ls)lsimeB163
MELO3C021575Bottle gourd (USVL1VR-Ls)lsimeB234
MELO3C021575Cucumber (Gy14) v2cgybmeB001
MELO3C021575Cucumber (Gy14) v2cgybmeB140
MELO3C021575Cucumber (Gy14) v2cgybmeB300